JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SP3_chr2_173895775_173970373	0/0	c0008	2346	2	2	0	0	0	0	copy fasta	SP3	chr2	173895775	173970373
SP3_chr2_173895775_173970373	0/0	c0009	2346	1	0	0	0	1	0	copy fasta	SP3	chr2	173895775	173970373
SP4_chr7_21423083_21519822	1/1	c0001	2355	392	84	65	183	12	46	copy fasta	SP4	chr7	21423083	21519822
SP4_chr7_21423083_21519822	0/0	c0002	2355	9	0	0	9	0	0	copy fasta	SP4	chr7	21423083	21519822
SP4_chr7_21423083_21519822	0/0	c0003	2355	7	1	6	0	0	0	copy fasta	SP4	chr7	21423083	21519822
SP4_chr7_21423083_21519822	0/0	c0004	2355	6	0	2	4	0	0	copy fasta	SP4	chr7	21423083	21519822
SP4_chr7_21423083_21519822	0/0	c0005	2355	4	4	0	0	0	0	copy fasta	SP4	chr7	21423083	21519822
SP4_chr7_21423083_21519822	0/0	c0006	2355	3	0	0	3	0	0	copy fasta	SP4	chr7	21423083	21519822
SP4_chr7_21423083_21519822	0/0	c0007	2355	2	2	0	0	0	0	copy fasta	SP4	chr7	21423083	21519822
SP4_chr7_21423083_21519822	0/0	c0008	2355	1	0	1	0	0	0	copy fasta	SP4	chr7	21423083	21519822
SP4_chr7_21423083_21519822	0/0	c0009	2355	1	0	0	1	0	0	copy fasta	SP4	chr7	21423083	21519822
SP4_chr7_21423083_21519822	0/0	c0010	2355	1	1	0	0	0	0	copy fasta	SP4	chr7	21423083	21519822
SP5_chr2_170710337_170723078	0/1	c0001	1197	198	49	31	96	7	14	copy fasta	SP5	chr2	170710337	170723078
SP5_chr2_170710337_170723078	1/0	c0002	1197	143	32	29	61	6	14	copy fasta	SP5	chr2	170710337	170723078
SP5_chr2_170710337_170723078	0/0	c0003	1197	86	0	18	44	5	19	copy fasta	SP5	chr2	170710337	170723078
SP5_chr2_170710337_170723078	0/0	c0004	1197	14	14	0	0	0	0	copy fasta	SP5	chr2	170710337	170723078
SP5_chr2_170710337_170723078	0/0	c0005	1197	3	3	0	0	0	0	copy fasta	SP5	chr2	170710337	170723078
SP5_chr2_170710337_170723078	0/0	c0006	1197	2	0	2	0	0	0	copy fasta	SP5	chr2	170710337	170723078
SP5_chr2_170710337_170723078	0/0	c0007	1197	1	0	0	1	0	0	copy fasta	SP5	chr2	170710337	170723078
SP5_chr2_170710337_170723078	0/0	c0008	1197	1	0	1	0	0	0	copy fasta	SP5	chr2	170710337	170723078
SP5_chr2_170710337_170723078	0/0	c0009	1197	1	1	0	0	0	0	copy fasta	SP5	chr2	170710337	170723078
SP5_chr2_170710337_170723078	0/0	c0010	1197	1	1	0	0	0	0	copy fasta	SP5	chr2	170710337	170723078
SP5_chr2_170710337_170723078	0/0	c0011	1197	1	0	0	0	0	1	copy fasta	SP5	chr2	170710337	170723078
SP5_chr2_170710337_170723078	0/0	c0012	1197	1	0	1	0	0	0	copy fasta	SP5	chr2	170710337	170723078
SP6_chr17_47839908_47856163	1/1	c0001	1131	381	93	78	153	16	39	copy fasta	SP6	chr17	47839908	47856163
SP6_chr17_47839908_47856163	0/0	c0002	1131	3	0	0	0	0	3	copy fasta	SP6	chr17	47839908	47856163
SP6_chr17_47839908_47856163	0/0	c0003	1131	1	0	0	1	0	0	copy fasta	SP6	chr17	47839908	47856163
SP6_chr17_47839908_47856163	0/0	c0004	1131	1	1	0	0	0	0	copy fasta	SP6	chr17	47839908	47856163
SP6_chr17_47839908_47856163	0/0	c0005	1131	1	0	0	1	0	0	copy fasta	SP6	chr17	47839908	47856163
SP6_chr17_47839908_47856163	0/0	c0006	1131	1	1	0	0	0	0	copy fasta	SP6	chr17	47839908	47856163
SP6_chr17_47839908_47856163	0/0	c0007	1131	1	0	0	1	0	0	copy fasta	SP6	chr17	47839908	47856163
SP6_chr17_47839908_47856163	0/0	c0008	1131	1	1	0	0	0	0	copy fasta	SP6	chr17	47839908	47856163
SP7_chr12_53321575_53341354	0/1	c0001	1296	333	67	67	148	12	38	copy fasta	SP7	chr12	53321575	53341354
SP7_chr12_53321575_53341354	0/0	c0002	1296	19	9	2	6	0	2	copy fasta	SP7	chr12	53321575	53341354
SP7_chr12_53321575_53341354	1/0	c0003	1296	12	10	1	0	0	0	copy fasta	SP7	chr12	53321575	53341354
SP7_chr12_53321575_53341354	0/0	c0004	1296	1	0	0	1	0	0	copy fasta	SP7	chr12	53321575	53341354
SP7_chr12_53321575_53341354	0/0	c0005	1296	1	0	1	0	0	0	copy fasta	SP7	chr12	53321575	53341354
SP7_chr12_53321575_53341354	0/0	c0006	1296	1	0	0	1	0	0	copy fasta	SP7	chr12	53321575	53341354
SP7_chr12_53321575_53341354	0/0	c0007	1265	1	0	1	0	0	0	copy fasta	SP7	chr12	53321575	53341354
SP7_chr12_53321575_53341354	0/0	c0008	1296	1	0	0	1	0	0	copy fasta	SP7	chr12	53321575	53341354
SP7_chr12_53321575_53341354	0/0	c0009	1296	1	0	0	1	0	0	copy fasta	SP7	chr12	53321575	53341354
SP8_chr7_20777279_20791886	1/1	c0001	1527	265	84	47	98	11	23	copy fasta	SP8	chr7	20777279	20791886
SP8_chr7_20777279_20791886	0/0	c0002	1527	130	7	23	77	3	20	copy fasta	SP8	chr7	20777279	20791886
SP8_chr7_20777279_20791886	0/0	c0003	1524	13	2	5	0	2	4	copy fasta	SP8	chr7	20777279	20791886
SP8_chr7_20777279_20791886	0/0	c0004	1527	3	3	0	0	0	0	copy fasta	SP8	chr7	20777279	20791886
SP8_chr7_20777279_20791886	0/0	c0005	1527	1	0	0	0	0	1	copy fasta	SP8	chr7	20777279	20791886
SP8_chr7_20777279_20791886	0/0	c0006	1527	1	1	0	0	0	0	copy fasta	SP8	chr7	20777279	20791886
SP8_chr7_20777279_20791886	0/0	c0007	1527	1	0	0	1	0	0	copy fasta	SP8	chr7	20777279	20791886
SP8_chr7_20777279_20791886	0/0	c0008	1527	1	0	1	0	0	0	copy fasta	SP8	chr7	20777279	20791886
SP8_chr7_20777279_20791886	0/0	c0009	1527	1	1	0	0	0	0	copy fasta	SP8	chr7	20777279	20791886