JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SPAM1_chr7_123920241_123965046	0/0	c0002	1530	99	14	25	47	6	7	copy fasta	SPAM1	chr7	123920241	123965046
SPAM1_chr7_123920241_123965046	0/0	c0003	1530	5	4	0	0	0	1	copy fasta	SPAM1	chr7	123920241	123965046
SPAM1_chr7_123920241_123965046	0/0	c0004	1530	2	0	2	0	0	0	copy fasta	SPAM1	chr7	123920241	123965046
SPAM1_chr7_123920241_123965046	0/0	c0005	1530	2	0	0	2	0	0	copy fasta	SPAM1	chr7	123920241	123965046
SPAM1_chr7_123920241_123965046	0/0	c0006	1530	1	0	0	0	0	1	copy fasta	SPAM1	chr7	123920241	123965046
SPAM1_chr7_123920241_123965046	0/0	c0007	1530	1	0	0	0	0	1	copy fasta	SPAM1	chr7	123920241	123965046
SPAM1_chr7_123920241_123965046	0/0	c0008	1530	1	1	0	0	0	0	copy fasta	SPAM1	chr7	123920241	123965046
SPAM1_chr7_123920241_123965046	0/0	c0009	1530	1	0	1	0	0	0	copy fasta	SPAM1	chr7	123920241	123965046
SPANXA1_chrX_141578674_141589738	0/0	c0001	294	101	18	18	57	0	8	copy fasta	SPANXA1	chrX	141578674	141589738
SPANXA1_chrX_141578674_141589738	0/0	c0002	294	26	12	3	9	0	2	copy fasta	SPANXA1	chrX	141578674	141589738
SPANXA1_chrX_141578674_141589738	0/0	c0003	294	22	7	1	12	0	2	copy fasta	SPANXA1	chrX	141578674	141589738
SPANXA1_chrX_141578674_141589738	0/0	c0004	294	2	2	0	0	0	0	copy fasta	SPANXA1	chrX	141578674	141589738
SPANXA1_chrX_141578674_141589738	0/0	c0005	294	1	1	0	0	0	0	copy fasta	SPANXA1	chrX	141578674	141589738
SPANXA1_chrX_141578674_141589738	0/0	c0006	294	1	1	0	0	0	0	copy fasta	SPANXA1	chrX	141578674	141589738
SPANXA1_chrX_141578674_141589738	0/0	c0007	294	1	1	0	0	0	0	copy fasta	SPANXA1	chrX	141578674	141589738
SPANXA1_chrX_141578674_141589738	0/0	c0008	294	1	0	0	1	0	0	copy fasta	SPANXA1	chrX	141578674	141589738
SPANXA1_chrX_141578674_141589738	0/0	c0009	294	1	1	0	0	0	0	copy fasta	SPANXA1	chrX	141578674	141589738
SPANXA1_chrX_141578674_141589738	0/0	c0010	294	1	0	0	1	0	0	copy fasta	SPANXA1	chrX	141578674	141589738
SPANXA2_chrX_141584708_141595762	0/0	c0000	0	2	0	0	2	0	0	copy fasta	SPANXA2	chrX	141584708	141595762
SPANXA2_chrX_141584708_141595762	0/0	c0001	294	115	15	15	75	2	8	copy fasta	SPANXA2	chrX	141584708	141595762
SPANXA2_chrX_141584708_141595762	0/0	c0002	294	30	7	2	18	0	3	copy fasta	SPANXA2	chrX	141584708	141595762
SPANXA2_chrX_141584708_141595762	0/0	c0003	294	21	9	4	7	0	1	copy fasta	SPANXA2	chrX	141584708	141595762
SPANXA2_chrX_141584708_141595762	0/0	c0004	294	3	3	0	0	0	0	copy fasta	SPANXA2	chrX	141584708	141595762
SPANXA2_chrX_141584708_141595762	0/0	c0005	312	2	2	0	0	0	0	copy fasta	SPANXA2	chrX	141584708	141595762
SPANXA2_chrX_141584708_141595762	0/0	c0006	291	1	0	0	1	0	0	copy fasta	SPANXA2	chrX	141584708	141595762
SPANXA2_chrX_141584708_141595762	0/0	c0007	295	1	0	0	1	0	0	copy fasta	SPANXA2	chrX	141584708	141595762
SPANXA2_chrX_141584708_141595762	0/0	c0008	294	1	0	0	1	0	0	copy fasta	SPANXA2	chrX	141584708	141595762
SPANXA2_chrX_141584708_141595762	0/0	c0009	294	1	1	0	0	0	0	copy fasta	SPANXA2	chrX	141584708	141595762
SPANXA2_chrX_141584708_141595762	0/0	c0010	294	1	0	0	0	0	1	copy fasta	SPANXA2	chrX	141584708	141595762
SPANXA2_chrX_141584708_141595762	0/0	c0011	295	1	0	1	0	0	0	copy fasta	SPANXA2	chrX	141584708	141595762
SPANXA2_chrX_141584708_141595762	0/0	c0012	294	1	1	0	0	0	0	copy fasta	SPANXA2	chrX	141584708	141595762
SPANXA2_chrX_141584708_141595762	0/0	c0013	294	1	1	0	0	0	0	copy fasta	SPANXA2	chrX	141584708	141595762
SPANXA2_chrX_141584708_141595762	0/0	c0014	294	1	1	0	0	0	0	copy fasta	SPANXA2	chrX	141584708	141595762
SPANXA2_chrX_141584708_141595762	0/0	c0015	294	1	0	0	1	0	0	copy fasta	SPANXA2	chrX	141584708	141595762
SPANXA2_chrX_141584708_141595762	0/0	c0016	312	1	1	0	0	0	0	copy fasta	SPANXA2	chrX	141584708	141595762
SPANXA2_chrX_141584708_141595762	0/0	c0017	312	1	1	0	0	0	0	copy fasta	SPANXA2	chrX	141584708	141595762
SPANXB1_chrX_140997594_141008706	0/0	c0001	312	186	31	39	89	6	21	copy fasta	SPANXB1	chrX	140997594	141008706
SPANXB1_chrX_140997594_141008706	1/1	c0002	312	102	25	20	43	5	7	copy fasta	SPANXB1	chrX	140997594	141008706
SPANXB1_chrX_140997594_141008706	0/0	c0003	312	2	2	0	0	0	0	copy fasta	SPANXB1	chrX	140997594	141008706
SPANXB1_chrX_140997594_141008706	0/0	c0004	294	1	0	0	0	0	1	copy fasta	SPANXB1	chrX	140997594	141008706
SPANXB1_chrX_140997594_141008706	0/0	c0005	294	1	0	0	1	0	0	copy fasta	SPANXB1	chrX	140997594	141008706
SPANXB1_chrX_140997594_141008706	0/0	c0006	293	1	0	0	1	0	0	copy fasta	SPANXB1	chrX	140997594	141008706
SPANXB1_chrX_140997594_141008706	0/0	c0007	36327	1	1	0	0	0	0	copy fasta	SPANXB1	chrX	140997594	141008706
SPANXB1_chrX_140997594_141008706	0/0	c0008	312	1	0	0	1	0	0	copy fasta	SPANXB1	chrX	140997594	141008706
SPANXB1_chrX_140997594_141008706	0/0	c0009	312	1	0	0	0	0	1	copy fasta	SPANXB1	chrX	140997594	141008706
SPANXB1_chrX_140997594_141008706	0/0	c0010	312	1	1	0	0	0	0	copy fasta	SPANXB1	chrX	140997594	141008706
SPANXB1_chrX_140997594_141008706	0/0	c0011	312	1	1	0	0	0	0	copy fasta	SPANXB1	chrX	140997594	141008706
SPANXB1_chrX_140997594_141008706	0/0	c0012	312	1	1	0	0	0	0	copy fasta	SPANXB1	chrX	140997594	141008706
SPANXB1_chrX_140997594_141008706	0/0	c0013	312	1	0	1	0	0	0	copy fasta	SPANXB1	chrX	140997594	141008706
SPANXB1_chrX_140997594_141008706	0/0	c0014	303	1	0	0	1	0	0	copy fasta	SPANXB1	chrX	140997594	141008706