JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SPATA18_chr4_52046304_52102299	0/0	c0003	1617	5	0	0	5	0	0	copy fasta	SPATA18	chr4	52046304	52102299
SPATA18_chr4_52046304_52102299	0/0	c0004	1617	3	0	0	3	0	0	copy fasta	SPATA18	chr4	52046304	52102299
SPATA18_chr4_52046304_52102299	0/0	c0005	1617	3	2	0	0	0	1	copy fasta	SPATA18	chr4	52046304	52102299
SPATA18_chr4_52046304_52102299	0/0	c0006	1617	2	2	0	0	0	0	copy fasta	SPATA18	chr4	52046304	52102299
SPATA18_chr4_52046304_52102299	0/0	c0007	1617	2	0	0	2	0	0	copy fasta	SPATA18	chr4	52046304	52102299
SPATA18_chr4_52046304_52102299	0/0	c0008	1617	1	1	0	0	0	0	copy fasta	SPATA18	chr4	52046304	52102299
SPATA18_chr4_52046304_52102299	0/0	c0009	1617	1	0	0	1	0	0	copy fasta	SPATA18	chr4	52046304	52102299
SPATA18_chr4_52046304_52102299	0/0	c0010	1617	1	0	0	1	0	0	copy fasta	SPATA18	chr4	52046304	52102299
SPATA18_chr4_52046304_52102299	0/0	c0011	1617	1	1	0	0	0	0	copy fasta	SPATA18	chr4	52046304	52102299
SPATA18_chr4_52046304_52102299	0/0	c0012	1617	1	0	0	1	0	0	copy fasta	SPATA18	chr4	52046304	52102299
SPATA19_chr11_133835631_133850513	1/1	c0001	504	232	86	48	59	7	30	copy fasta	SPATA19	chr11	133835631	133850513
SPATA19_chr11_133835631_133850513	0/0	c0002	504	109	7	26	57	6	13	copy fasta	SPATA19	chr11	133835631	133850513
SPATA19_chr11_133835631_133850513	0/0	c0003	504	18	0	0	17	0	1	copy fasta	SPATA19	chr11	133835631	133850513
SPATA19_chr11_133835631_133850513	0/0	c0004	504	1	1	0	0	0	0	copy fasta	SPATA19	chr11	133835631	133850513
SPATA19_chr11_133835631_133850513	0/0	c0005	530	1	0	0	0	1	0	copy fasta	SPATA19	chr11	133835631	133850513
SPATA19_chr11_133835631_133850513	0/0	c0006	504	1	0	0	1	0	0	copy fasta	SPATA19	chr11	133835631	133850513
SPATA1_chr1_84501386_84572379	1/1	c0001	1323	136	19	26	71	5	13	copy fasta	SPATA1	chr1	84501386	84572379
SPATA1_chr1_84501386_84572379	0/0	c0002	1323	84	17	12	45	1	9	copy fasta	SPATA1	chr1	84501386	84572379
SPATA1_chr1_84501386_84572379	0/0	c0003	1323	44	15	8	16	3	2	copy fasta	SPATA1	chr1	84501386	84572379
SPATA1_chr1_84501386_84572379	0/0	c0004	1323	21	11	6	0	1	3	copy fasta	SPATA1	chr1	84501386	84572379
SPATA1_chr1_84501386_84572379	0/0	c0005	1323	19	19	0	0	0	0	copy fasta	SPATA1	chr1	84501386	84572379
SPATA1_chr1_84501386_84572379	0/0	c0006	1323	5	5	0	0	0	0	copy fasta	SPATA1	chr1	84501386	84572379
SPATA1_chr1_84501386_84572379	0/0	c0007	1323	1	0	1	0	0	0	copy fasta	SPATA1	chr1	84501386	84572379
SPATA1_chr1_84501386_84572379	0/0	c0008	1323	1	0	1	0	0	0	copy fasta	SPATA1	chr1	84501386	84572379
SPATA1_chr1_84501386_84572379	0/0	c0009	1323	1	0	0	0	0	1	copy fasta	SPATA1	chr1	84501386	84572379
SPATA20_chr17_50542174_50560852	0/1	c0001	2409	142	20	27	67	6	21	copy fasta	SPATA20	chr17	50542174	50560852
SPATA20_chr17_50542174_50560852	0/0	c0002	2409	93	58	16	9	4	6	copy fasta	SPATA20	chr17	50542174	50560852
SPATA20_chr17_50542174_50560852	1/0	c0003	2409	36	0	15	8	3	9	copy fasta	SPATA20	chr17	50542174	50560852
SPATA20_chr17_50542174_50560852	0/0	c0004	2409	21	9	6	5	1	0	copy fasta	SPATA20	chr17	50542174	50560852
SPATA20_chr17_50542174_50560852	0/0	c0005	2409	10	0	3	0	2	5	copy fasta	SPATA20	chr17	50542174	50560852
SPATA20_chr17_50542174_50560852	0/0	c0006	2409	4	0	2	0	0	2	copy fasta	SPATA20	chr17	50542174	50560852
SPATA20_chr17_50542174_50560852	0/0	c0007	2409	3	1	2	0	0	0	copy fasta	SPATA20	chr17	50542174	50560852
SPATA20_chr17_50542174_50560852	0/0	c0008	2409	3	0	0	3	0	0	copy fasta	SPATA20	chr17	50542174	50560852
SPATA20_chr17_50542174_50560852	0/0	c0009	2409	3	0	0	3	0	0	copy fasta	SPATA20	chr17	50542174	50560852
SPATA20_chr17_50542174_50560852	0/0	c0010	2409	2	0	0	2	0	0	copy fasta	SPATA20	chr17	50542174	50560852
SPATA20_chr17_50542174_50560852	0/0	c0011	2409	2	0	1	0	1	0	copy fasta	SPATA20	chr17	50542174	50560852
SPATA20_chr17_50542174_50560852	0/0	c0012	2409	1	0	0	1	0	0	copy fasta	SPATA20	chr17	50542174	50560852
SPATA20_chr17_50542174_50560852	0/0	c0013	2409	1	0	0	1	0	0	copy fasta	SPATA20	chr17	50542174	50560852
SPATA20_chr17_50542174_50560852	0/0	c0014	2409	1	0	1	0	0	0	copy fasta	SPATA20	chr17	50542174	50560852
SPATA20_chr17_50542174_50560852	0/0	c0015	2409	1	1	0	0	0	0	copy fasta	SPATA20	chr17	50542174	50560852
SPATA20_chr17_50542174_50560852	0/0	c0016	2409	1	1	0	0	0	0	copy fasta	SPATA20	chr17	50542174	50560852
SPATA20_chr17_50542174_50560852	0/0	c0017	2409	1	0	0	1	0	0	copy fasta	SPATA20	chr17	50542174	50560852
SPATA20_chr17_50542174_50560852	0/0	c0018	2409	1	0	1	0	0	0	copy fasta	SPATA20	chr17	50542174	50560852
SPATA20_chr17_50542174_50560852	0/0	c0019	2409	1	1	0	0	0	0	copy fasta	SPATA20	chr17	50542174	50560852
SPATA20_chr17_50542174_50560852	0/0	c0020	2409	1	0	0	0	0	1	copy fasta	SPATA20	chr17	50542174	50560852
SPATA20_chr17_50542174_50560852	0/0	c0021	2409	1	0	1	0	0	0	copy fasta	SPATA20	chr17	50542174	50560852
SPATA20_chr17_50542174_50560852	0/0	c0022	2409	1	1	0	0	0	0	copy fasta	SPATA20	chr17	50542174	50560852
SPATA20_chr17_50542174_50560852	0/0	c0023	2409	1	0	1	0	0	0	copy fasta	SPATA20	chr17	50542174	50560852
SPATA20_chr17_50542174_50560852	0/0	c0024	2409	1	1	0	0	0	0	copy fasta	SPATA20	chr17	50542174	50560852
SPATA20_chr17_50542174_50560852	0/0	c0025	2409	1	0	0	0	1	0	copy fasta	SPATA20	chr17	50542174	50560852