JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SPATA20_chr17_50542174_50560852	0/0	c0026	2409	1	1	0	0	0	0	copy fasta	SPATA20	chr17	50542174	50560852
SPATA21_chr1_16393643_16442424	1/0	c0001	1410	150	45	23	66	6	9	copy fasta	SPATA21	chr1	16393643	16442424
SPATA21_chr1_16393643_16442424	0/0	c0002	1410	68	16	27	7	2	16	copy fasta	SPATA21	chr1	16393643	16442424
SPATA21_chr1_16393643_16442424	0/1	c0003	1410	64	2	13	34	3	11	copy fasta	SPATA21	chr1	16393643	16442424
SPATA21_chr1_16393643_16442424	0/0	c0004	1413	19	16	3	0	0	0	copy fasta	SPATA21	chr1	16393643	16442424
SPATA21_chr1_16393643_16442424	0/0	c0005	1410	15	0	3	11	0	1	copy fasta	SPATA21	chr1	16393643	16442424
SPATA21_chr1_16393643_16442424	0/0	c0006	1410	9	0	0	9	0	0	copy fasta	SPATA21	chr1	16393643	16442424
SPATA21_chr1_16393643_16442424	0/0	c0007	1413	4	4	0	0	0	0	copy fasta	SPATA21	chr1	16393643	16442424
SPATA21_chr1_16393643_16442424	0/0	c0008	1410	4	0	0	0	1	3	copy fasta	SPATA21	chr1	16393643	16442424
SPATA21_chr1_16393643_16442424	0/0	c0009	1410	3	0	1	1	0	1	copy fasta	SPATA21	chr1	16393643	16442424
SPATA21_chr1_16393643_16442424	0/0	c0010	1413	2	0	0	0	1	1	copy fasta	SPATA21	chr1	16393643	16442424
SPATA21_chr1_16393643_16442424	0/0	c0011	1410	2	0	0	0	1	1	copy fasta	SPATA21	chr1	16393643	16442424
SPATA21_chr1_16393643_16442424	0/0	c0012	1413	2	2	0	0	0	0	copy fasta	SPATA21	chr1	16393643	16442424
SPATA21_chr1_16393643_16442424	0/0	c0013	1413	2	0	2	0	0	0	copy fasta	SPATA21	chr1	16393643	16442424
SPATA21_chr1_16393643_16442424	0/0	c0014	1410	2	2	0	0	0	0	copy fasta	SPATA21	chr1	16393643	16442424
SPATA21_chr1_16393643_16442424	0/0	c0015	1410	1	0	1	0	0	0	copy fasta	SPATA21	chr1	16393643	16442424
SPATA21_chr1_16393643_16442424	0/0	c0016	1410	1	1	0	0	0	0	copy fasta	SPATA21	chr1	16393643	16442424
SPATA21_chr1_16393643_16442424	0/0	c0017	1410	1	0	0	0	0	1	copy fasta	SPATA21	chr1	16393643	16442424
SPATA21_chr1_16393643_16442424	0/0	c0018	1410	1	0	1	0	0	0	copy fasta	SPATA21	chr1	16393643	16442424
SPATA21_chr1_16393643_16442424	0/0	c0019	1413	1	1	0	0	0	0	copy fasta	SPATA21	chr1	16393643	16442424
SPATA21_chr1_16393643_16442424	0/0	c0020	1410	1	1	0	0	0	0	copy fasta	SPATA21	chr1	16393643	16442424
SPATA22_chr17_3435019_3476819	1/0	c0001	1092	238	64	35	110	6	22	copy fasta	SPATA22	chr17	3435019	3476819
SPATA22_chr17_3435019_3476819	0/0	c0002	1092	102	16	21	57	3	5	copy fasta	SPATA22	chr17	3435019	3476819
SPATA22_chr17_3435019_3476819	0/1	c0003	1092	32	7	0	20	1	3	copy fasta	SPATA22	chr17	3435019	3476819
SPATA22_chr17_3435019_3476819	0/0	c0004	1092	31	5	15	0	3	8	copy fasta	SPATA22	chr17	3435019	3476819
SPATA22_chr17_3435019_3476819	0/0	c0005	1092	5	4	1	0	0	0	copy fasta	SPATA22	chr17	3435019	3476819
SPATA22_chr17_3435019_3476819	0/0	c0006	1092	5	1	2	0	1	1	copy fasta	SPATA22	chr17	3435019	3476819
SPATA22_chr17_3435019_3476819	0/0	c0007	1092	1	0	0	0	0	1	copy fasta	SPATA22	chr17	3435019	3476819
SPATA22_chr17_3435019_3476819	0/0	c0008	1092	1	1	0	0	0	0	copy fasta	SPATA22	chr17	3435019	3476819
SPATA22_chr17_3435019_3476819	0/0	c0009	1092	1	1	0	0	0	0	copy fasta	SPATA22	chr17	3435019	3476819
SPATA22_chr17_3435019_3476819	0/0	c0010	1092	1	0	0	0	0	1	copy fasta	SPATA22	chr17	3435019	3476819
SPATA22_chr17_3435019_3476819	0/0	c0011	1092	1	0	0	0	0	1	copy fasta	SPATA22	chr17	3435019	3476819
SPATA22_chr17_3435019_3476819	0/0	c0012	1092	1	1	0	0	0	0	copy fasta	SPATA22	chr17	3435019	3476819
SPATA22_chr17_3435019_3476819	0/0	c0013	1092	1	0	0	1	0	0	copy fasta	SPATA22	chr17	3435019	3476819
SPATA24_chr5_139391767_139409089	1/1	c0001	618	216	75	31	84	7	17	copy fasta	SPATA24	chr5	139391767	139409089
SPATA24_chr5_139391767_139409089	0/0	c0002	618	118	5	31	58	7	17	copy fasta	SPATA24	chr5	139391767	139409089
SPATA24_chr5_139391767_139409089	0/0	c0003	618	1	1	0	0	0	0	copy fasta	SPATA24	chr5	139391767	139409089
SPATA24_chr5_139391767_139409089	0/0	c0004	618	1	1	0	0	0	0	copy fasta	SPATA24	chr5	139391767	139409089
SPATA25_chr20_45881491_45892622	1/1	c0001	684	328	68	53	153	16	36	copy fasta	SPATA25	chr20	45881491	45892622
SPATA25_chr20_45881491_45892622	0/0	c0002	684	58	18	5	32	0	3	copy fasta	SPATA25	chr20	45881491	45892622
SPATA25_chr20_45881491_45892622	0/0	c0003	684	10	0	0	9	0	1	copy fasta	SPATA25	chr20	45881491	45892622
SPATA25_chr20_45881491_45892622	0/0	c0004	684	6	0	6	0	0	0	copy fasta	SPATA25	chr20	45881491	45892622
SPATA25_chr20_45881491_45892622	0/0	c0005	684	1	1	0	0	0	0	copy fasta	SPATA25	chr20	45881491	45892622
SPATA25_chr20_45881491_45892622	0/0	c0006	684	1	0	1	0	0	0	copy fasta	SPATA25	chr20	45881491	45892622
SPATA25_chr20_45881491_45892622	0/0	c0007	684	1	0	1	0	0	0	copy fasta	SPATA25	chr20	45881491	45892622
SPATA25_chr20_45881491_45892622	0/0	c0008	684	1	1	0	0	0	0	copy fasta	SPATA25	chr20	45881491	45892622
SPATA2L_chr16_89691357_89706705	1/1	c0001	1275	241	52	49	100	13	25	copy fasta	SPATA2L	chr16	89691357	89706705
SPATA2L_chr16_89691357_89706705	0/0	c0002	1275	95	16	20	47	1	11	copy fasta	SPATA2L	chr16	89691357	89706705
SPATA2L_chr16_89691357_89706705	0/0	c0003	1275	43	19	2	14	2	6	copy fasta	SPATA2L	chr16	89691357	89706705
SPATA2L_chr16_89691357_89706705	0/0	c0004	1276	15	4	4	6	0	1	copy fasta	SPATA2L	chr16	89691357	89706705