JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SPATA2L_chr16_89691357_89706705	0/0	c0005	1275	5	5	0	0	0	0	copy fasta	SPATA2L	chr16	89691357	89706705
SPATA2L_chr16_89691357_89706705	0/0	c0006	1275	5	0	5	0	0	0	copy fasta	SPATA2L	chr16	89691357	89706705
SPATA2L_chr16_89691357_89706705	0/0	c0007	1276	3	0	0	3	0	0	copy fasta	SPATA2L	chr16	89691357	89706705
SPATA2L_chr16_89691357_89706705	0/0	c0008	1275	2	0	0	0	2	0	copy fasta	SPATA2L	chr16	89691357	89706705
SPATA2L_chr16_89691357_89706705	0/0	c0009	1276	1	0	0	1	0	0	copy fasta	SPATA2L	chr16	89691357	89706705
SPATA2L_chr16_89691357_89706705	0/0	c0010	1275	1	0	0	0	0	1	copy fasta	SPATA2L	chr16	89691357	89706705
SPATA2L_chr16_89691357_89706705	0/0	c0011	1276	1	0	0	0	0	1	copy fasta	SPATA2L	chr16	89691357	89706705
SPATA2L_chr16_89691357_89706705	0/0	c0012	1275	1	1	0	0	0	0	copy fasta	SPATA2L	chr16	89691357	89706705
SPATA2L_chr16_89691357_89706705	0/0	c0013	1275	1	0	0	0	0	1	copy fasta	SPATA2L	chr16	89691357	89706705
SPATA2L_chr16_89691357_89706705	0/0	c0014	1275	1	1	0	0	0	0	copy fasta	SPATA2L	chr16	89691357	89706705
SPATA2L_chr16_89691357_89706705	0/0	c0015	1275	1	0	0	1	0	0	copy fasta	SPATA2L	chr16	89691357	89706705
SPATA2L_chr16_89691357_89706705	0/0	c0016	1275	1	1	0	0	0	0	copy fasta	SPATA2L	chr16	89691357	89706705
SPATA2L_chr16_89691357_89706705	0/0	c0017	1275	1	1	0	0	0	0	copy fasta	SPATA2L	chr16	89691357	89706705
SPATA2_chr20_49898391_49920529	1/1	c0001	1563	167	74	31	40	9	11	copy fasta	SPATA2	chr20	49898391	49920529
SPATA2_chr20_49898391_49920529	0/0	c0002	1563	145	5	37	72	4	27	copy fasta	SPATA2	chr20	49898391	49920529
SPATA2_chr20_49898391_49920529	0/0	c0003	1563	59	1	2	56	0	0	copy fasta	SPATA2	chr20	49898391	49920529
SPATA2_chr20_49898391_49920529	0/0	c0004	1563	30	3	2	20	3	2	copy fasta	SPATA2	chr20	49898391	49920529
SPATA2_chr20_49898391_49920529	0/0	c0005	1563	4	4	0	0	0	0	copy fasta	SPATA2	chr20	49898391	49920529
SPATA2_chr20_49898391_49920529	0/0	c0006	1563	2	2	0	0	0	0	copy fasta	SPATA2	chr20	49898391	49920529
SPATA2_chr20_49898391_49920529	0/0	c0007	1563	2	0	0	2	0	0	copy fasta	SPATA2	chr20	49898391	49920529
SPATA2_chr20_49898391_49920529	0/0	c0008	1563	2	0	2	0	0	0	copy fasta	SPATA2	chr20	49898391	49920529
SPATA2_chr20_49898391_49920529	0/0	c0009	1563	2	0	0	0	0	2	copy fasta	SPATA2	chr20	49898391	49920529
SPATA2_chr20_49898391_49920529	0/0	c0010	1563	2	2	0	0	0	0	copy fasta	SPATA2	chr20	49898391	49920529
SPATA2_chr20_49898391_49920529	0/0	c0011	1563	2	2	0	0	0	0	copy fasta	SPATA2	chr20	49898391	49920529
SPATA2_chr20_49898391_49920529	0/0	c0012	1563	1	0	0	1	0	0	copy fasta	SPATA2	chr20	49898391	49920529
SPATA2_chr20_49898391_49920529	0/0	c0013	1563	1	0	0	1	0	0	copy fasta	SPATA2	chr20	49898391	49920529
SPATA2_chr20_49898391_49920529	0/0	c0014	1563	1	0	0	1	0	0	copy fasta	SPATA2	chr20	49898391	49920529
SPATA2_chr20_49898391_49920529	0/0	c0015	1563	1	0	0	0	0	1	copy fasta	SPATA2	chr20	49898391	49920529
SPATA2_chr20_49898391_49920529	0/0	c0016	1563	1	0	0	0	0	1	copy fasta	SPATA2	chr20	49898391	49920529
SPATA2_chr20_49898391_49920529	0/0	c0017	1563	1	0	1	0	0	0	copy fasta	SPATA2	chr20	49898391	49920529
SPATA2_chr20_49898391_49920529	0/0	c0018	1563	1	0	1	0	0	0	copy fasta	SPATA2	chr20	49898391	49920529
SPATA2_chr20_49898391_49920529	0/0	c0019	1563	1	1	0	0	0	0	copy fasta	SPATA2	chr20	49898391	49920529
SPATA2_chr20_49898391_49920529	0/0	c0020	1563	1	0	0	1	0	0	copy fasta	SPATA2	chr20	49898391	49920529
SPATA31A1_chr9_39350669_39366962	0/0	c0001	4044	118	17	12	84	0	5	copy fasta	SPATA31A1	chr9	39350669	39366962
SPATA31A1_chr9_39350669_39366962	0/0	c0002	4044	89	0	17	66	3	3	copy fasta	SPATA31A1	chr9	39350669	39366962
SPATA31A1_chr9_39350669_39366962	0/1	c0003	4044	65	12	26	3	4	19	copy fasta	SPATA31A1	chr9	39350669	39366962
SPATA31A1_chr9_39350669_39366962	0/0	c0004	4044	29	1	4	21	0	3	copy fasta	SPATA31A1	chr9	39350669	39366962
SPATA31A1_chr9_39350669_39366962	0/0	c0005	4044	22	4	2	13	0	3	copy fasta	SPATA31A1	chr9	39350669	39366962
SPATA31A1_chr9_39350669_39366962	0/0	c0006	4044	10	0	9	1	0	0	copy fasta	SPATA31A1	chr9	39350669	39366962
SPATA31A1_chr9_39350669_39366962	0/0	c0007	4044	7	7	0	0	0	0	copy fasta	SPATA31A1	chr9	39350669	39366962
SPATA31A1_chr9_39350669_39366962	0/0	c0008	4044	6	0	0	6	0	0	copy fasta	SPATA31A1	chr9	39350669	39366962
SPATA31A1_chr9_39350669_39366962	0/0	c0009	4044	5	0	5	0	0	0	copy fasta	SPATA31A1	chr9	39350669	39366962
SPATA31A1_chr9_39350669_39366962	1/0	c0010	4044	4	2	1	0	0	0	copy fasta	SPATA31A1	chr9	39350669	39366962
SPATA31A1_chr9_39350669_39366962	0/0	c0011	4044	4	0	3	0	1	0	copy fasta	SPATA31A1	chr9	39350669	39366962
SPATA31A1_chr9_39350669_39366962	0/0	c0012	4044	3	3	0	0	0	0	copy fasta	SPATA31A1	chr9	39350669	39366962
SPATA31A1_chr9_39350669_39366962	0/0	c0013	4044	2	2	0	0	0	0	copy fasta	SPATA31A1	chr9	39350669	39366962
SPATA31A1_chr9_39350669_39366962	0/0	c0014	4044	2	0	2	0	0	0	copy fasta	SPATA31A1	chr9	39350669	39366962
SPATA31A1_chr9_39350669_39366962	0/0	c0015	4044	2	1	1	0	0	0	copy fasta	SPATA31A1	chr9	39350669	39366962
SPATA31A1_chr9_39350669_39366962	0/0	c0016	4044	2	0	0	2	0	0	copy fasta	SPATA31A1	chr9	39350669	39366962
SPATA31A1_chr9_39350669_39366962	0/0	c0017	4044	2	0	0	2	0	0	copy fasta	SPATA31A1	chr9	39350669	39366962