JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SPATA31A1_chr9_39350669_39366962	0/0	c0018	4044	2	2	0	0	0	0	copy fasta	SPATA31A1	chr9	39350669	39366962
SPATA31A1_chr9_39350669_39366962	0/0	c0019	4044	2	0	0	2	0	0	copy fasta	SPATA31A1	chr9	39350669	39366962
SPATA31A1_chr9_39350669_39366962	0/0	c0020	4044	2	2	0	0	0	0	copy fasta	SPATA31A1	chr9	39350669	39366962
SPATA31A1_chr9_39350669_39366962	0/0	c0021	4044	2	2	0	0	0	0	copy fasta	SPATA31A1	chr9	39350669	39366962
SPATA31A1_chr9_39350669_39366962	0/0	c0022	4044	2	2	0	0	0	0	copy fasta	SPATA31A1	chr9	39350669	39366962
SPATA31A1_chr9_39350669_39366962	0/0	c0023	4044	1	0	0	1	0	0	copy fasta	SPATA31A1	chr9	39350669	39366962
SPATA31A1_chr9_39350669_39366962	0/0	c0024	4044	1	0	0	0	0	1	copy fasta	SPATA31A1	chr9	39350669	39366962
SPATA31A1_chr9_39350669_39366962	0/0	c0025	4044	1	0	0	1	0	0	copy fasta	SPATA31A1	chr9	39350669	39366962
SPATA31A1_chr9_39350669_39366962	0/0	c0026	4044	1	1	0	0	0	0	copy fasta	SPATA31A1	chr9	39350669	39366962
SPATA31A1_chr9_39350669_39366962	0/0	c0027	4044	1	0	0	1	0	0	copy fasta	SPATA31A1	chr9	39350669	39366962
SPATA31A1_chr9_39350669_39366962	0/0	c0028	4044	1	1	0	0	0	0	copy fasta	SPATA31A1	chr9	39350669	39366962
SPATA31A1_chr9_39350669_39366962	0/0	c0029	4044	1	0	0	0	0	1	copy fasta	SPATA31A1	chr9	39350669	39366962
SPATA31A1_chr9_39350669_39366962	0/0	c0030	4044	1	0	0	0	0	1	copy fasta	SPATA31A1	chr9	39350669	39366962
SPATA31A1_chr9_39350669_39366962	0/0	c0031	4044	1	0	0	1	0	0	copy fasta	SPATA31A1	chr9	39350669	39366962
SPATA31A1_chr9_39350669_39366962	0/0	c0032	4044	1	0	0	1	0	0	copy fasta	SPATA31A1	chr9	39350669	39366962
SPATA31A1_chr9_39350669_39366962	0/0	c0033	4044	1	0	0	0	0	1	copy fasta	SPATA31A1	chr9	39350669	39366962
SPATA31A1_chr9_39350669_39366962	0/0	c0034	4044	1	1	0	0	0	0	copy fasta	SPATA31A1	chr9	39350669	39366962
SPATA31A1_chr9_39350669_39366962	0/0	c0035	4044	1	1	0	0	0	0	copy fasta	SPATA31A1	chr9	39350669	39366962
SPATA31A1_chr9_39350669_39366962	0/0	c0036	4044	1	0	1	0	0	0	copy fasta	SPATA31A1	chr9	39350669	39366962
SPATA31A1_chr9_39350669_39366962	0/0	c0037	4044	1	0	0	1	0	0	copy fasta	SPATA31A1	chr9	39350669	39366962
SPATA31A1_chr9_39350669_39366962	0/0	c0038	4044	1	0	0	1	0	0	copy fasta	SPATA31A1	chr9	39350669	39366962
SPATA31A1_chr9_39350669_39366962	0/0	c0039	4044	1	0	0	0	0	1	copy fasta	SPATA31A1	chr9	39350669	39366962
SPATA31A1_chr9_39350669_39366962	0/0	c0040	4044	1	0	0	0	1	0	copy fasta	SPATA31A1	chr9	39350669	39366962
SPATA31A1_chr9_39350669_39366962	0/0	c0041	4044	1	1	0	0	0	0	copy fasta	SPATA31A1	chr9	39350669	39366962
SPATA31A1_chr9_39350669_39366962	0/0	c0042	4044	1	1	0	0	0	0	copy fasta	SPATA31A1	chr9	39350669	39366962
SPATA31A1_chr9_39350669_39366962	0/0	c0043	4044	1	0	1	0	0	0	copy fasta	SPATA31A1	chr9	39350669	39366962
SPATA31A1_chr9_39350669_39366962	0/0	c0044	4044	1	0	0	0	1	0	copy fasta	SPATA31A1	chr9	39350669	39366962
SPATA31A1_chr9_39350669_39366962	0/0	c0045	4044	1	1	0	0	0	0	copy fasta	SPATA31A1	chr9	39350669	39366962
SPATA31A1_chr9_39350669_39366962	0/0	c0046	4044	1	1	0	0	0	0	copy fasta	SPATA31A1	chr9	39350669	39366962
SPATA31A1_chr9_39350669_39366962	0/0	c0047	4044	1	1	0	0	0	0	copy fasta	SPATA31A1	chr9	39350669	39366962
SPATA31A1_chr9_39350669_39366962	0/0	c0048	4044	1	0	0	1	0	0	copy fasta	SPATA31A1	chr9	39350669	39366962
SPATA31A1_chr9_39350669_39366962	0/0	c0049	4044	1	1	0	0	0	0	copy fasta	SPATA31A1	chr9	39350669	39366962
SPATA31A1_chr9_39350669_39366962	0/0	c0050	4044	1	0	0	0	0	1	copy fasta	SPATA31A1	chr9	39350669	39366962
SPATA31A1_chr9_39350669_39366962	0/0	c0051	4044	1	1	0	0	0	0	copy fasta	SPATA31A1	chr9	39350669	39366962
SPATA31A1_chr9_39350669_39366962	0/0	c0052	4044	1	1	0	0	0	0	copy fasta	SPATA31A1	chr9	39350669	39366962
SPATA31A1_chr9_39350669_39366962	0/0	c0053	4044	1	0	0	1	0	0	copy fasta	SPATA31A1	chr9	39350669	39366962
SPATA31A1_chr9_39350669_39366962	0/0	c0054	4044	1	1	0	0	0	0	copy fasta	SPATA31A1	chr9	39350669	39366962
SPATA31A1_chr9_39350669_39366962	0/0	c0055	4044	1	1	0	0	0	0	copy fasta	SPATA31A1	chr9	39350669	39366962
SPATA31A1_chr9_39350669_39366962	0/0	c0056	4044	1	1	0	0	0	0	copy fasta	SPATA31A1	chr9	39350669	39366962
SPATA31A1_chr9_39350669_39366962	0/0	c0057	4044	1	1	0	0	0	0	copy fasta	SPATA31A1	chr9	39350669	39366962
SPATA31A1_chr9_39350669_39366962	0/0	c0058	4044	1	0	0	1	0	0	copy fasta	SPATA31A1	chr9	39350669	39366962
SPATA31A1_chr9_39350669_39366962	0/0	c0059	4044	1	0	0	0	0	1	copy fasta	SPATA31A1	chr9	39350669	39366962
SPATA31A1_chr9_39350669_39366962	0/0	c0060	4044	1	0	0	0	0	1	copy fasta	SPATA31A1	chr9	39350669	39366962
SPATA31A1_chr9_39350669_39366962	0/0	c0061	4044	1	1	0	0	0	0	copy fasta	SPATA31A1	chr9	39350669	39366962
SPATA31A1_chr9_39350669_39366962	0/0	c0062	4044	1	0	0	1	0	0	copy fasta	SPATA31A1	chr9	39350669	39366962
SPATA31A1_chr9_39350669_39366962	0/0	c0063	4044	1	0	0	0	0	1	copy fasta	SPATA31A1	chr9	39350669	39366962
SPATA31A1_chr9_39350669_39366962	0/0	c0064	4044	1	0	0	1	0	0	copy fasta	SPATA31A1	chr9	39350669	39366962
SPATA31A3_chr9_66981304_66997550	0/0	c0001	4044	85	6	5	67	2	5	copy fasta	SPATA31A3	chr9	66981304	66997550
SPATA31A3_chr9_66981304_66997550	0/0	c0002	4044	68	6	17	33	1	11	copy fasta	SPATA31A3	chr9	66981304	66997550
SPATA31A3_chr9_66981304_66997550	0/0	c0003	4044	66	12	20	20	5	9	copy fasta	SPATA31A3	chr9	66981304	66997550