JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SPATA31C2_chr9_88124305_88143475	0/0	c0026	3405	2	2	0	0	0	0	copy fasta	SPATA31C2	chr9	88124305	88143475
SPATA31C2_chr9_88124305_88143475	0/0	c0027	3408	2	2	0	0	0	0	copy fasta	SPATA31C2	chr9	88124305	88143475
SPATA31C2_chr9_88124305_88143475	0/0	c0028	3405	2	0	0	0	0	2	copy fasta	SPATA31C2	chr9	88124305	88143475
SPATA31C2_chr9_88124305_88143475	0/0	c0029	3405	2	2	0	0	0	0	copy fasta	SPATA31C2	chr9	88124305	88143475
SPATA31C2_chr9_88124305_88143475	0/0	c0030	3405	2	2	0	0	0	0	copy fasta	SPATA31C2	chr9	88124305	88143475
SPATA31C2_chr9_88124305_88143475	0/0	c0031	3405	2	2	0	0	0	0	copy fasta	SPATA31C2	chr9	88124305	88143475
SPATA31C2_chr9_88124305_88143475	0/0	c0032	3405	2	2	0	0	0	0	copy fasta	SPATA31C2	chr9	88124305	88143475
SPATA31C2_chr9_88124305_88143475	0/0	c0033	3405	1	1	0	0	0	0	copy fasta	SPATA31C2	chr9	88124305	88143475
SPATA31C2_chr9_88124305_88143475	0/0	c0034	3405	1	1	0	0	0	0	copy fasta	SPATA31C2	chr9	88124305	88143475
SPATA31C2_chr9_88124305_88143475	0/0	c0035	3405	1	1	0	0	0	0	copy fasta	SPATA31C2	chr9	88124305	88143475
SPATA31C2_chr9_88124305_88143475	0/0	c0036	3408	1	1	0	0	0	0	copy fasta	SPATA31C2	chr9	88124305	88143475
SPATA31C2_chr9_88124305_88143475	0/0	c0037	3405	1	0	0	0	0	1	copy fasta	SPATA31C2	chr9	88124305	88143475
SPATA31C2_chr9_88124305_88143475	0/0	c0038	3405	1	1	0	0	0	0	copy fasta	SPATA31C2	chr9	88124305	88143475
SPATA31C2_chr9_88124305_88143475	0/0	c0039	3405	1	0	0	1	0	0	copy fasta	SPATA31C2	chr9	88124305	88143475
SPATA31C2_chr9_88124305_88143475	0/0	c0040	3405	1	0	0	0	0	1	copy fasta	SPATA31C2	chr9	88124305	88143475
SPATA31C2_chr9_88124305_88143475	0/0	c0041	3405	1	0	1	0	0	0	copy fasta	SPATA31C2	chr9	88124305	88143475
SPATA31C2_chr9_88124305_88143475	0/0	c0042	3405	1	1	0	0	0	0	copy fasta	SPATA31C2	chr9	88124305	88143475
SPATA31C2_chr9_88124305_88143475	0/0	c0043	3405	1	0	0	1	0	0	copy fasta	SPATA31C2	chr9	88124305	88143475
SPATA31C2_chr9_88124305_88143475	0/0	c0044	3405	1	0	0	1	0	0	copy fasta	SPATA31C2	chr9	88124305	88143475
SPATA31C2_chr9_88124305_88143475	0/0	c0045	3405	1	0	0	0	0	1	copy fasta	SPATA31C2	chr9	88124305	88143475
SPATA31C2_chr9_88124305_88143475	0/0	c0046	3405	1	1	0	0	0	0	copy fasta	SPATA31C2	chr9	88124305	88143475
SPATA31C2_chr9_88124305_88143475	0/0	c0047	3405	1	0	0	0	0	1	copy fasta	SPATA31C2	chr9	88124305	88143475
SPATA31C2_chr9_88124305_88143475	0/0	c0048	3405	1	0	0	1	0	0	copy fasta	SPATA31C2	chr9	88124305	88143475
SPATA31C2_chr9_88124305_88143475	0/0	c0049	3459	1	0	0	1	0	0	copy fasta	SPATA31C2	chr9	88124305	88143475
SPATA31C2_chr9_88124305_88143475	0/0	c0050	3441	1	0	0	1	0	0	copy fasta	SPATA31C2	chr9	88124305	88143475
SPATA31C2_chr9_88124305_88143475	0/0	c0051	3441	1	0	0	0	0	1	copy fasta	SPATA31C2	chr9	88124305	88143475
SPATA31C2_chr9_88124305_88143475	0/0	c0052	3405	1	1	0	0	0	0	copy fasta	SPATA31C2	chr9	88124305	88143475
SPATA31C2_chr9_88124305_88143475	0/0	c0053	3405	1	0	1	0	0	0	copy fasta	SPATA31C2	chr9	88124305	88143475
SPATA31C2_chr9_88124305_88143475	0/0	c0054	3405	1	0	0	1	0	0	copy fasta	SPATA31C2	chr9	88124305	88143475
SPATA31C2_chr9_88124305_88143475	0/0	c0055	3405	1	0	0	0	0	1	copy fasta	SPATA31C2	chr9	88124305	88143475
SPATA31C2_chr9_88124305_88143475	0/0	c0056	3405	1	1	0	0	0	0	copy fasta	SPATA31C2	chr9	88124305	88143475
SPATA31C2_chr9_88124305_88143475	0/0	c0057	3405	1	0	0	1	0	0	copy fasta	SPATA31C2	chr9	88124305	88143475
SPATA31C2_chr9_88124305_88143475	0/0	c0058	3405	1	1	0	0	0	0	copy fasta	SPATA31C2	chr9	88124305	88143475
SPATA31C2_chr9_88124305_88143475	0/0	c0059	3405	1	1	0	0	0	0	copy fasta	SPATA31C2	chr9	88124305	88143475
SPATA31C2_chr9_88124305_88143475	0/0	c0060	3405	1	0	1	0	0	0	copy fasta	SPATA31C2	chr9	88124305	88143475
SPATA31C2_chr9_88124305_88143475	0/0	c0061	3216	1	0	0	0	0	1	copy fasta	SPATA31C2	chr9	88124305	88143475
SPATA31C2_chr9_88124305_88143475	0/0	c0062	3216	1	0	0	1	0	0	copy fasta	SPATA31C2	chr9	88124305	88143475
SPATA31D1_chr9_81983772_82000253	0/1	c0001	4731	157	37	21	76	6	16	copy fasta	SPATA31D1	chr9	81983772	82000253
SPATA31D1_chr9_81983772_82000253	1/0	c0002	4731	132	4	38	67	5	17	copy fasta	SPATA31D1	chr9	81983772	82000253
SPATA31D1_chr9_81983772_82000253	0/0	c0003	4731	11	0	4	7	0	0	copy fasta	SPATA31D1	chr9	81983772	82000253
SPATA31D1_chr9_81983772_82000253	0/0	c0004	4731	9	9	0	0	0	0	copy fasta	SPATA31D1	chr9	81983772	82000253
SPATA31D1_chr9_81983772_82000253	0/0	c0005	4731	9	5	2	2	0	0	copy fasta	SPATA31D1	chr9	81983772	82000253
SPATA31D1_chr9_81983772_82000253	0/0	c0006	4731	7	7	0	0	0	0	copy fasta	SPATA31D1	chr9	81983772	82000253
SPATA31D1_chr9_81983772_82000253	0/0	c0007	4731	6	6	0	0	0	0	copy fasta	SPATA31D1	chr9	81983772	82000253
SPATA31D1_chr9_81983772_82000253	0/0	c0008	4731	4	4	0	0	0	0	copy fasta	SPATA31D1	chr9	81983772	82000253
SPATA31D1_chr9_81983772_82000253	0/0	c0009	4731	3	3	0	0	0	0	copy fasta	SPATA31D1	chr9	81983772	82000253
SPATA31D1_chr9_81983772_82000253	0/0	c0010	4731	3	3	0	0	0	0	copy fasta	SPATA31D1	chr9	81983772	82000253
SPATA31D1_chr9_81983772_82000253	0/0	c0011	4731	3	0	0	0	0	3	copy fasta	SPATA31D1	chr9	81983772	82000253
SPATA31D1_chr9_81983772_82000253	0/0	c0012	4731	3	0	1	0	2	0	copy fasta	SPATA31D1	chr9	81983772	82000253
SPATA31D1_chr9_81983772_82000253	0/0	c0013	4731	2	0	1	0	1	0	copy fasta	SPATA31D1	chr9	81983772	82000253