JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SPATA31D1_chr9_81983772_82000253	0/0	c0014	4731	2	2	0	0	0	0	copy fasta	SPATA31D1	chr9	81983772	82000253
SPATA31D1_chr9_81983772_82000253	0/0	c0015	4731	2	2	0	0	0	0	copy fasta	SPATA31D1	chr9	81983772	82000253
SPATA31D1_chr9_81983772_82000253	0/0	c0016	4731	2	2	0	0	0	0	copy fasta	SPATA31D1	chr9	81983772	82000253
SPATA31D1_chr9_81983772_82000253	0/0	c0017	4731	1	0	0	1	0	0	copy fasta	SPATA31D1	chr9	81983772	82000253
SPATA31D1_chr9_81983772_82000253	0/0	c0018	4731	1	0	0	1	0	0	copy fasta	SPATA31D1	chr9	81983772	82000253
SPATA31D1_chr9_81983772_82000253	0/0	c0019	4731	1	1	0	0	0	0	copy fasta	SPATA31D1	chr9	81983772	82000253
SPATA31D1_chr9_81983772_82000253	0/0	c0020	4731	1	0	0	0	0	1	copy fasta	SPATA31D1	chr9	81983772	82000253
SPATA31D1_chr9_81983772_82000253	0/0	c0021	4731	1	1	0	0	0	0	copy fasta	SPATA31D1	chr9	81983772	82000253
SPATA31D1_chr9_81983772_82000253	0/0	c0022	4731	1	1	0	0	0	0	copy fasta	SPATA31D1	chr9	81983772	82000253
SPATA31D1_chr9_81983772_82000253	0/0	c0023	4731	1	1	0	0	0	0	copy fasta	SPATA31D1	chr9	81983772	82000253
SPATA31D1_chr9_81983772_82000253	0/0	c0024	4731	1	1	0	0	0	0	copy fasta	SPATA31D1	chr9	81983772	82000253
SPATA31D1_chr9_81983772_82000253	0/0	c0025	4731	1	1	0	0	0	0	copy fasta	SPATA31D1	chr9	81983772	82000253
SPATA31D1_chr9_81983772_82000253	0/0	c0026	4731	1	1	0	0	0	0	copy fasta	SPATA31D1	chr9	81983772	82000253
SPATA31D1_chr9_81983772_82000253	0/0	c0027	4731	1	0	0	1	0	0	copy fasta	SPATA31D1	chr9	81983772	82000253
SPATA31D1_chr9_81983772_82000253	0/0	c0028	4731	1	0	1	0	0	0	copy fasta	SPATA31D1	chr9	81983772	82000253
SPATA31D1_chr9_81983772_82000253	0/0	c0029	4731	1	1	0	0	0	0	copy fasta	SPATA31D1	chr9	81983772	82000253
SPATA31D1_chr9_81983772_82000253	0/0	c0030	4731	1	0	0	0	0	1	copy fasta	SPATA31D1	chr9	81983772	82000253
SPATA31D1_chr9_81983772_82000253	0/0	c0031	4731	1	1	0	0	0	0	copy fasta	SPATA31D1	chr9	81983772	82000253
SPATA31D1_chr9_81983772_82000253	0/0	c0032	4731	1	1	0	0	0	0	copy fasta	SPATA31D1	chr9	81983772	82000253
SPATA31D1_chr9_81983772_82000253	0/0	c0033	4731	1	0	0	1	0	0	copy fasta	SPATA31D1	chr9	81983772	82000253
SPATA31D1_chr9_81983772_82000253	0/0	c0034	4731	1	0	0	0	1	0	copy fasta	SPATA31D1	chr9	81983772	82000253
SPATA31D1_chr9_81983772_82000253	0/0	c0035	4731	1	0	0	0	0	1	copy fasta	SPATA31D1	chr9	81983772	82000253
SPATA31D1_chr9_81983772_82000253	0/0	c0036	4731	1	0	0	1	0	0	copy fasta	SPATA31D1	chr9	81983772	82000253
SPATA31D1_chr9_81983772_82000253	0/0	c0037	4731	1	1	0	0	0	0	copy fasta	SPATA31D1	chr9	81983772	82000253
SPATA31D1_chr9_81983772_82000253	0/0	c0038	4731	1	1	0	0	0	0	copy fasta	SPATA31D1	chr9	81983772	82000253
SPATA31D1_chr9_81983772_82000253	0/0	c0039	4731	1	0	1	0	0	0	copy fasta	SPATA31D1	chr9	81983772	82000253
SPATA31D1_chr9_81983772_82000253	0/0	c0040	4731	1	0	0	0	1	0	copy fasta	SPATA31D1	chr9	81983772	82000253
SPATA31D1_chr9_81983772_82000253	0/0	c0041	4731	1	0	0	0	0	1	copy fasta	SPATA31D1	chr9	81983772	82000253
SPATA31D1_chr9_81983772_82000253	0/0	c0042	4731	1	0	0	1	0	0	copy fasta	SPATA31D1	chr9	81983772	82000253
SPATA31D1_chr9_81983772_82000253	0/0	c0043	4731	1	0	1	0	0	0	copy fasta	SPATA31D1	chr9	81983772	82000253
SPATA31D3_chr9_81938500_81955093	1/0	c0001	2754	178	36	30	88	5	18	copy fasta	SPATA31D3	chr9	81938500	81955093
SPATA31D3_chr9_81938500_81955093	0/0	c0002	2754	79	6	21	37	5	10	copy fasta	SPATA31D3	chr9	81938500	81955093
SPATA31D3_chr9_81938500_81955093	0/0	c0003	2754	17	1	1	13	1	1	copy fasta	SPATA31D3	chr9	81938500	81955093
SPATA31D3_chr9_81938500_81955093	0/0	c0004	2754	14	10	1	2	1	0	copy fasta	SPATA31D3	chr9	81938500	81955093
SPATA31D3_chr9_81938500_81955093	0/0	c0005	2754	11	0	10	0	0	1	copy fasta	SPATA31D3	chr9	81938500	81955093
SPATA31D3_chr9_81938500_81955093	0/0	c0006	2754	6	0	0	6	0	0	copy fasta	SPATA31D3	chr9	81938500	81955093
SPATA31D3_chr9_81938500_81955093	0/0	c0007	2754	5	5	0	0	0	0	copy fasta	SPATA31D3	chr9	81938500	81955093
SPATA31D3_chr9_81938500_81955093	0/0	c0008	2754	5	0	0	5	0	0	copy fasta	SPATA31D3	chr9	81938500	81955093
SPATA31D3_chr9_81938500_81955093	0/0	c0009	2754	4	0	4	0	0	0	copy fasta	SPATA31D3	chr9	81938500	81955093
SPATA31D3_chr9_81938500_81955093	0/0	c0010	2754	4	0	0	3	0	1	copy fasta	SPATA31D3	chr9	81938500	81955093
SPATA31D3_chr9_81938500_81955093	0/0	c0011	2754	4	4	0	0	0	0	copy fasta	SPATA31D3	chr9	81938500	81955093
SPATA31D3_chr9_81938500_81955093	0/0	c0012	2754	3	3	0	0	0	0	copy fasta	SPATA31D3	chr9	81938500	81955093
SPATA31D3_chr9_81938500_81955093	0/0	c0013	2754	3	3	0	0	0	0	copy fasta	SPATA31D3	chr9	81938500	81955093
SPATA31D3_chr9_81938500_81955093	0/1	c0014	2754	3	0	2	0	0	0	copy fasta	SPATA31D3	chr9	81938500	81955093
SPATA31D3_chr9_81938500_81955093	0/0	c0015	2754	3	3	0	0	0	0	copy fasta	SPATA31D3	chr9	81938500	81955093
SPATA31D3_chr9_81938500_81955093	0/0	c0016	2754	3	3	0	0	0	0	copy fasta	SPATA31D3	chr9	81938500	81955093
SPATA31D3_chr9_81938500_81955093	0/0	c0017	2754	2	2	0	0	0	0	copy fasta	SPATA31D3	chr9	81938500	81955093
SPATA31D3_chr9_81938500_81955093	0/0	c0018	2754	2	2	0	0	0	0	copy fasta	SPATA31D3	chr9	81938500	81955093
SPATA31D3_chr9_81938500_81955093	0/0	c0019	2754	2	2	0	0	0	0	copy fasta	SPATA31D3	chr9	81938500	81955093
SPATA31D3_chr9_81938500_81955093	0/0	c0020	2754	2	2	0	0	0	0	copy fasta	SPATA31D3	chr9	81938500	81955093