JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ATXN2_chr12_111447214_111604315	0/0	c0014	3468	1	1	0	0	0	0	copy fasta	ATXN2	chr12	111447214	111604315
ATXN2_chr12_111447214_111604315	0/0	c0015	3468	1	1	0	0	0	0	copy fasta	ATXN2	chr12	111447214	111604315
ATXN2_chr12_111447214_111604315	0/0	c0016	3465	1	0	0	1	0	0	copy fasta	ATXN2	chr12	111447214	111604315
ATXN2_chr12_111447214_111604315	0/0	c0017	3465	1	0	0	1	0	0	copy fasta	ATXN2	chr12	111447214	111604315
ATXN2_chr12_111447214_111604315	0/0	c0018	3465	1	0	1	0	0	0	copy fasta	ATXN2	chr12	111447214	111604315
ATXN2_chr12_111447214_111604315	0/0	c0019	3465	1	1	0	0	0	0	copy fasta	ATXN2	chr12	111447214	111604315
ATXN2_chr12_111447214_111604315	0/0	c0020	3468	1	1	0	0	0	0	copy fasta	ATXN2	chr12	111447214	111604315
ATXN2_chr12_111447214_111604315	0/0	c0021	3468	1	1	0	0	0	0	copy fasta	ATXN2	chr12	111447214	111604315
ATXN2_chr12_111447214_111604315	0/0	c0022	3468	1	0	1	0	0	0	copy fasta	ATXN2	chr12	111447214	111604315
ATXN2_chr12_111447214_111604315	0/0	c0023	3459	1	1	0	0	0	0	copy fasta	ATXN2	chr12	111447214	111604315
ATXN2_chr12_111447214_111604315	0/0	c0024	3480	1	1	0	0	0	0	copy fasta	ATXN2	chr12	111447214	111604315
ATXN2_chr12_111447214_111604315	0/0	c0025	3492	1	0	0	1	0	0	copy fasta	ATXN2	chr12	111447214	111604315
ATXN2_chr12_111447214_111604315	0/0	c0026	3465	1	0	0	0	1	0	copy fasta	ATXN2	chr12	111447214	111604315
ATXN2_chr12_111447214_111604315	0/0	c0027	3486	1	0	1	0	0	0	copy fasta	ATXN2	chr12	111447214	111604315
ATXN2_chr12_111447214_111604315	0/0	c0028	3480	1	1	0	0	0	0	copy fasta	ATXN2	chr12	111447214	111604315
ATXN2_chr12_111447214_111604315	0/0	c0029	3480	1	0	0	1	0	0	copy fasta	ATXN2	chr12	111447214	111604315
ATXN2_chr12_111447214_111604315	0/0	c0030	3480	1	0	0	1	0	0	copy fasta	ATXN2	chr12	111447214	111604315
ATXN3L_chrX_13313647_13325053	0/0	c0001	1068	200	58	34	101	2	5	copy fasta	ATXN3L	chrX	13313647	13325053
ATXN3L_chrX_13313647_13325053	1/1	c0002	1068	76	11	20	20	8	15	copy fasta	ATXN3L	chrX	13313647	13325053
ATXN3L_chrX_13313647_13325053	0/0	c0003	1068	22	1	6	8	1	6	copy fasta	ATXN3L	chrX	13313647	13325053
ATXN3L_chrX_13313647_13325053	0/0	c0004	1068	8	0	0	4	0	4	copy fasta	ATXN3L	chrX	13313647	13325053
ATXN3L_chrX_13313647_13325053	0/0	c0005	1068	6	4	2	0	0	0	copy fasta	ATXN3L	chrX	13313647	13325053
ATXN3L_chrX_13313647_13325053	0/0	c0006	1050	2	0	0	0	0	2	copy fasta	ATXN3L	chrX	13313647	13325053
ATXN3L_chrX_13313647_13325053	0/0	c0007	1068	1	0	0	1	0	0	copy fasta	ATXN3L	chrX	13313647	13325053
ATXN3L_chrX_13313647_13325053	0/0	c0008	1068	1	1	0	0	0	0	copy fasta	ATXN3L	chrX	13313647	13325053
ATXN3L_chrX_13313647_13325053	0/0	c0009	1068	1	1	0	0	0	0	copy fasta	ATXN3L	chrX	13313647	13325053
ATXN3_chr14_92053552_92111582	1/0	c0001	1086	94	8	17	56	5	7	copy fasta	ATXN3	chr14	92053552	92111582
ATXN3_chr14_92053552_92111582	0/0	c0002	1113	29	3	19	0	4	3	copy fasta	ATXN3	chr14	92053552	92111582
ATXN3_chr14_92053552_92111582	0/0	c0003	1125	28	1	2	16	0	9	copy fasta	ATXN3	chr14	92053552	92111582
ATXN3_chr14_92053552_92111582	0/0	c0004	1101	24	0	0	23	0	1	copy fasta	ATXN3	chr14	92053552	92111582
ATXN3_chr14_92053552_92111582	0/0	c0005	1128	17	0	0	17	0	0	copy fasta	ATXN3	chr14	92053552	92111582
ATXN3_chr14_92053552_92111582	0/0	c0006	1116	15	5	0	10	0	0	copy fasta	ATXN3	chr14	92053552	92111582
ATXN3_chr14_92053552_92111582	0/0	c0007	1113	15	0	8	1	3	3	copy fasta	ATXN3	chr14	92053552	92111582
ATXN3_chr14_92053552_92111582	0/0	c0008	1104	12	0	2	5	2	3	copy fasta	ATXN3	chr14	92053552	92111582
ATXN3_chr14_92053552_92111582	0/0	c0009	1131	11	0	0	11	0	0	copy fasta	ATXN3	chr14	92053552	92111582
ATXN3_chr14_92053552_92111582	0/1	c0010	1128	10	6	2	0	0	1	copy fasta	ATXN3	chr14	92053552	92111582
ATXN3_chr14_92053552_92111582	0/0	c0011	1125	10	0	6	0	1	3	copy fasta	ATXN3	chr14	92053552	92111582
ATXN3_chr14_92053552_92111582	0/0	c0012	1107	8	1	1	0	2	4	copy fasta	ATXN3	chr14	92053552	92111582
ATXN3_chr14_92053552_92111582	0/0	c0013	1110	7	6	1	0	0	0	copy fasta	ATXN3	chr14	92053552	92111582
ATXN3_chr14_92053552_92111582	0/0	c0014	1122	6	0	0	5	0	1	copy fasta	ATXN3	chr14	92053552	92111582
ATXN3_chr14_92053552_92111582	0/0	c0015	1110	6	5	1	0	0	0	copy fasta	ATXN3	chr14	92053552	92111582
ATXN3_chr14_92053552_92111582	0/0	c0016	1131	6	6	0	0	0	0	copy fasta	ATXN3	chr14	92053552	92111582
ATXN3_chr14_92053552_92111582	0/0	c0017	1128	5	0	4	0	0	1	copy fasta	ATXN3	chr14	92053552	92111582
ATXN3_chr14_92053552_92111582	0/0	c0018	1116	5	1	3	0	1	0	copy fasta	ATXN3	chr14	92053552	92111582
ATXN3_chr14_92053552_92111582	0/0	c0019	1143	5	5	0	0	0	0	copy fasta	ATXN3	chr14	92053552	92111582
ATXN3_chr14_92053552_92111582	0/0	c0020	1119	4	3	0	0	0	1	copy fasta	ATXN3	chr14	92053552	92111582
ATXN3_chr14_92053552_92111582	0/0	c0021	1143	4	2	0	2	0	0	copy fasta	ATXN3	chr14	92053552	92111582
ATXN3_chr14_92053552_92111582	0/0	c0022	1140	4	2	2	0	0	0	copy fasta	ATXN3	chr14	92053552	92111582
ATXN3_chr14_92053552_92111582	0/0	c0023	1137	4	1	0	3	0	0	copy fasta	ATXN3	chr14	92053552	92111582
ATXN3_chr14_92053552_92111582	0/0	c0024	1134	4	1	0	3	0	0	copy fasta	ATXN3	chr14	92053552	92111582