JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SPECC1_chr17_20004359_20324026	0/0	c0009	3207	2	0	0	0	2	0	copy fasta	SPECC1	chr17	20004359	20324026
SPECC1_chr17_20004359_20324026	0/0	c0010	3207	2	2	0	0	0	0	copy fasta	SPECC1	chr17	20004359	20324026
SPECC1_chr17_20004359_20324026	0/0	c0011	3207	2	0	0	2	0	0	copy fasta	SPECC1	chr17	20004359	20324026
SPECC1_chr17_20004359_20324026	0/0	c0012	3207	2	1	1	0	0	0	copy fasta	SPECC1	chr17	20004359	20324026
SPECC1_chr17_20004359_20324026	0/0	c0013	3207	1	0	0	0	0	1	copy fasta	SPECC1	chr17	20004359	20324026
SPECC1_chr17_20004359_20324026	0/0	c0014	3207	1	0	0	0	0	1	copy fasta	SPECC1	chr17	20004359	20324026
SPECC1_chr17_20004359_20324026	0/0	c0015	3204	1	0	0	1	0	0	copy fasta	SPECC1	chr17	20004359	20324026
SPECC1_chr17_20004359_20324026	0/0	c0016	3207	1	1	0	0	0	0	copy fasta	SPECC1	chr17	20004359	20324026
SPEF1_chr20_3772504_3786448	1/1	c0001	711	408	85	78	179	16	48	copy fasta	SPEF1	chr20	3772504	3786448
SPEF1_chr20_3772504_3786448	0/0	c0002	711	6	6	0	0	0	0	copy fasta	SPEF1	chr20	3772504	3786448
SPEF1_chr20_3772504_3786448	0/0	c0003	711	3	3	0	0	0	0	copy fasta	SPEF1	chr20	3772504	3786448
SPEF1_chr20_3772504_3786448	0/0	c0004	711	1	0	0	1	0	0	copy fasta	SPEF1	chr20	3772504	3786448
SPEF2_chr5_35612863_35819611	0/0	c0001	5469	40	6	5	27	0	2	copy fasta	SPEF2	chr5	35612863	35819611
SPEF2_chr5_35612863_35819611	0/0	c0002	5469	33	5	15	7	0	6	copy fasta	SPEF2	chr5	35612863	35819611
SPEF2_chr5_35612863_35819611	0/0	c0003	5469	32	7	3	15	2	5	copy fasta	SPEF2	chr5	35612863	35819611
SPEF2_chr5_35612863_35819611	0/1	c0004	5469	32	11	11	3	1	5	copy fasta	SPEF2	chr5	35612863	35819611
SPEF2_chr5_35612863_35819611	0/0	c0005	5469	27	1	7	17	0	2	copy fasta	SPEF2	chr5	35612863	35819611
SPEF2_chr5_35612863_35819611	0/0	c0006	5469	16	4	0	11	0	1	copy fasta	SPEF2	chr5	35612863	35819611
SPEF2_chr5_35612863_35819611	0/0	c0007	5469	7	0	0	6	0	1	copy fasta	SPEF2	chr5	35612863	35819611
SPEF2_chr5_35612863_35819611	0/0	c0008	5469	6	6	0	0	0	0	copy fasta	SPEF2	chr5	35612863	35819611
SPEF2_chr5_35612863_35819611	0/0	c0009	5469	5	4	1	0	0	0	copy fasta	SPEF2	chr5	35612863	35819611
SPEF2_chr5_35612863_35819611	0/0	c0010	5469	4	0	4	0	0	0	copy fasta	SPEF2	chr5	35612863	35819611
SPEF2_chr5_35612863_35819611	0/0	c0011	5469	4	4	0	0	0	0	copy fasta	SPEF2	chr5	35612863	35819611
SPEF2_chr5_35612863_35819611	0/0	c0012	5469	4	2	0	1	0	1	copy fasta	SPEF2	chr5	35612863	35819611
SPEF2_chr5_35612863_35819611	0/0	c0013	5469	4	2	0	0	0	2	copy fasta	SPEF2	chr5	35612863	35819611
SPEF2_chr5_35612863_35819611	1/0	c0014	5469	3	2	0	0	0	0	copy fasta	SPEF2	chr5	35612863	35819611
SPEF2_chr5_35612863_35819611	0/0	c0015	5469	3	2	0	0	0	1	copy fasta	SPEF2	chr5	35612863	35819611
SPEF2_chr5_35612863_35819611	0/0	c0016	5469	3	0	2	0	0	1	copy fasta	SPEF2	chr5	35612863	35819611
SPEF2_chr5_35612863_35819611	0/0	c0017	5469	2	1	1	0	0	0	copy fasta	SPEF2	chr5	35612863	35819611
SPEF2_chr5_35612863_35819611	0/0	c0018	5469	2	2	0	0	0	0	copy fasta	SPEF2	chr5	35612863	35819611
SPEF2_chr5_35612863_35819611	0/0	c0019	5469	2	2	0	0	0	0	copy fasta	SPEF2	chr5	35612863	35819611
SPEF2_chr5_35612863_35819611	0/0	c0020	5469	2	2	0	0	0	0	copy fasta	SPEF2	chr5	35612863	35819611
SPEF2_chr5_35612863_35819611	0/0	c0021	5469	2	0	1	1	0	0	copy fasta	SPEF2	chr5	35612863	35819611
SPEF2_chr5_35612863_35819611	0/0	c0022	5469	2	0	2	0	0	0	copy fasta	SPEF2	chr5	35612863	35819611
SPEF2_chr5_35612863_35819611	0/0	c0023	5469	2	0	2	0	0	0	copy fasta	SPEF2	chr5	35612863	35819611
SPEF2_chr5_35612863_35819611	0/0	c0024	5469	1	0	0	0	0	1	copy fasta	SPEF2	chr5	35612863	35819611
SPEF2_chr5_35612863_35819611	0/0	c0025	5469	1	0	0	1	0	0	copy fasta	SPEF2	chr5	35612863	35819611
SPEF2_chr5_35612863_35819611	0/0	c0026	5469	1	1	0	0	0	0	copy fasta	SPEF2	chr5	35612863	35819611
SPEF2_chr5_35612863_35819611	0/0	c0027	5469	1	1	0	0	0	0	copy fasta	SPEF2	chr5	35612863	35819611
SPEF2_chr5_35612863_35819611	0/0	c0028	5469	1	1	0	0	0	0	copy fasta	SPEF2	chr5	35612863	35819611
SPEF2_chr5_35612863_35819611	0/0	c0029	5469	1	1	0	0	0	0	copy fasta	SPEF2	chr5	35612863	35819611
SPEF2_chr5_35612863_35819611	0/0	c0030	5469	1	0	0	1	0	0	copy fasta	SPEF2	chr5	35612863	35819611
SPEF2_chr5_35612863_35819611	0/0	c0031	5469	1	0	0	1	0	0	copy fasta	SPEF2	chr5	35612863	35819611
SPEF2_chr5_35612863_35819611	0/0	c0032	5469	1	0	0	0	0	1	copy fasta	SPEF2	chr5	35612863	35819611
SPEF2_chr5_35612863_35819611	0/0	c0033	5469	1	1	0	0	0	0	copy fasta	SPEF2	chr5	35612863	35819611
SPEF2_chr5_35612863_35819611	0/0	c0034	5469	1	1	0	0	0	0	copy fasta	SPEF2	chr5	35612863	35819611
SPEF2_chr5_35612863_35819611	0/0	c0035	5469	1	0	0	1	0	0	copy fasta	SPEF2	chr5	35612863	35819611
SPEF2_chr5_35612863_35819611	0/0	c0036	5469	1	1	0	0	0	0	copy fasta	SPEF2	chr5	35612863	35819611
SPEF2_chr5_35612863_35819611	0/0	c0037	5469	1	0	0	1	0	0	copy fasta	SPEF2	chr5	35612863	35819611
SPEF2_chr5_35612863_35819611	0/0	c0038	5469	1	1	0	0	0	0	copy fasta	SPEF2	chr5	35612863	35819611