JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SPPL2C_chr17_45839881_45852067	0/0	c0008	2055	6	0	0	6	0	0	copy fasta	SPPL2C	chr17	45839881	45852067
SPPL2C_chr17_45839881_45852067	0/0	c0009	2055	4	0	0	4	0	0	copy fasta	SPPL2C	chr17	45839881	45852067
SPPL2C_chr17_45839881_45852067	0/0	c0010	2055	4	4	0	0	0	0	copy fasta	SPPL2C	chr17	45839881	45852067
SPPL2C_chr17_45839881_45852067	0/0	c0011	2055	3	2	1	0	0	0	copy fasta	SPPL2C	chr17	45839881	45852067
SPPL2C_chr17_45839881_45852067	0/0	c0012	2055	3	3	0	0	0	0	copy fasta	SPPL2C	chr17	45839881	45852067
SPPL2C_chr17_45839881_45852067	0/0	c0013	2055	2	0	2	0	0	0	copy fasta	SPPL2C	chr17	45839881	45852067
SPPL2C_chr17_45839881_45852067	0/0	c0014	2055	2	0	0	0	1	1	copy fasta	SPPL2C	chr17	45839881	45852067
SPPL2C_chr17_45839881_45852067	0/0	c0015	2055	1	0	0	1	0	0	copy fasta	SPPL2C	chr17	45839881	45852067
SPPL2C_chr17_45839881_45852067	0/0	c0016	2055	1	1	0	0	0	0	copy fasta	SPPL2C	chr17	45839881	45852067
SPPL2C_chr17_45839881_45852067	0/0	c0017	2055	1	1	0	0	0	0	copy fasta	SPPL2C	chr17	45839881	45852067
SPPL2C_chr17_45839881_45852067	0/0	c0018	2055	1	0	0	1	0	0	copy fasta	SPPL2C	chr17	45839881	45852067
SPPL2C_chr17_45839881_45852067	0/0	c0019	2055	1	0	0	1	0	0	copy fasta	SPPL2C	chr17	45839881	45852067
SPPL2C_chr17_45839881_45852067	0/0	c0020	2055	1	0	0	1	0	0	copy fasta	SPPL2C	chr17	45839881	45852067
SPPL2C_chr17_45839881_45852067	0/0	c0021	2055	1	1	0	0	0	0	copy fasta	SPPL2C	chr17	45839881	45852067
SPPL2C_chr17_45839881_45852067	0/0	c0022	2055	1	1	0	0	0	0	copy fasta	SPPL2C	chr17	45839881	45852067
SPPL2C_chr17_45839881_45852067	0/0	c0023	2055	1	0	1	0	0	0	copy fasta	SPPL2C	chr17	45839881	45852067
SPPL2C_chr17_45839881_45852067	0/0	c0024	2055	1	0	0	1	0	0	copy fasta	SPPL2C	chr17	45839881	45852067
SPPL2C_chr17_45839881_45852067	0/0	c0025	2055	1	0	0	1	0	0	copy fasta	SPPL2C	chr17	45839881	45852067
SPPL2C_chr17_45839881_45852067	0/0	c0026	2055	1	0	0	1	0	0	copy fasta	SPPL2C	chr17	45839881	45852067
SPPL2C_chr17_45839881_45852067	0/0	c0027	2055	1	0	0	0	0	1	copy fasta	SPPL2C	chr17	45839881	45852067
SPPL2C_chr17_45839881_45852067	0/0	c0028	2055	1	0	0	1	0	0	copy fasta	SPPL2C	chr17	45839881	45852067
SPPL2C_chr17_45839881_45852067	0/0	c0029	2055	1	1	0	0	0	0	copy fasta	SPPL2C	chr17	45839881	45852067
SPPL2C_chr17_45839881_45852067	0/0	c0030	2055	1	1	0	0	0	0	copy fasta	SPPL2C	chr17	45839881	45852067
SPPL2C_chr17_45839881_45852067	0/0	c0031	2055	1	1	0	0	0	0	copy fasta	SPPL2C	chr17	45839881	45852067
SPPL2C_chr17_45839881_45852067	0/0	c0032	2055	1	0	1	0	0	0	copy fasta	SPPL2C	chr17	45839881	45852067
SPPL2C_chr17_45839881_45852067	0/0	c0033	2055	1	0	1	0	0	0	copy fasta	SPPL2C	chr17	45839881	45852067
SPPL3_chr12_120757510_120909358	1/1	c0001	1155	270	54	42	130	16	26	copy fasta	SPPL3	chr12	120757510	120909358
SPPL3_chr12_120757510_120909358	0/0	c0002	1155	45	24	2	18	0	1	copy fasta	SPPL3	chr12	120757510	120909358
SPPL3_chr12_120757510_120909358	0/0	c0003	1155	3	0	0	0	0	3	copy fasta	SPPL3	chr12	120757510	120909358
SPPL3_chr12_120757510_120909358	0/0	c0004	1155	2	2	0	0	0	0	copy fasta	SPPL3	chr12	120757510	120909358
SPRED1_chr15_38247836_38362249	0/1	c0001	1335	278	58	52	125	9	33	copy fasta	SPRED1	chr15	38247836	38362249
SPRED1_chr15_38247836_38362249	1/0	c0002	1335	99	36	10	44	1	7	copy fasta	SPRED1	chr15	38247836	38362249
SPRED1_chr15_38247836_38362249	0/0	c0003	1335	1	0	0	1	0	0	copy fasta	SPRED1	chr15	38247836	38362249
SPRED2_chr2_65305851_65437599	1/1	c0001	1257	155	70	27	36	6	14	copy fasta	SPRED2	chr2	65305851	65437599
SPRED2_chr2_65305851_65437599	0/0	c0002	1257	107	8	21	59	2	17	copy fasta	SPRED2	chr2	65305851	65437599
SPRED2_chr2_65305851_65437599	0/0	c0003	1257	5	5	0	0	0	0	copy fasta	SPRED2	chr2	65305851	65437599
SPRED2_chr2_65305851_65437599	0/0	c0004	1257	4	0	2	2	0	0	copy fasta	SPRED2	chr2	65305851	65437599
SPRED2_chr2_65305851_65437599	0/0	c0005	1257	1	0	0	0	0	1	copy fasta	SPRED2	chr2	65305851	65437599
SPRED2_chr2_65305851_65437599	0/0	c0006	1257	1	0	0	1	0	0	copy fasta	SPRED2	chr2	65305851	65437599
SPRED2_chr2_65305851_65437599	0/0	c0007	1257	1	0	0	1	0	0	copy fasta	SPRED2	chr2	65305851	65437599
SPRED2_chr2_65305851_65437599	0/0	c0008	1257	1	0	0	1	0	0	copy fasta	SPRED2	chr2	65305851	65437599
SPRED2_chr2_65305851_65437599	0/0	c0009	1257	1	1	0	0	0	0	copy fasta	SPRED2	chr2	65305851	65437599
SPRED3_chr19_38383697_38404587	1/1	c0001	1233	344	72	56	168	14	32	copy fasta	SPRED3	chr19	38383697	38404587
SPRED3_chr19_38383697_38404587	0/0	c0002	1233	5	2	2	0	0	1	copy fasta	SPRED3	chr19	38383697	38404587
SPRED3_chr19_38383697_38404587	0/0	c0003	1233	2	0	2	0	0	0	copy fasta	SPRED3	chr19	38383697	38404587
SPRED3_chr19_38383697_38404587	0/0	c0004	1233	2	0	0	1	0	1	copy fasta	SPRED3	chr19	38383697	38404587
SPRED3_chr19_38383697_38404587	0/0	c0005	1233	1	0	0	1	0	0	copy fasta	SPRED3	chr19	38383697	38404587
SPRED3_chr19_38383697_38404587	0/0	c0006	1233	1	0	0	0	0	1	copy fasta	SPRED3	chr19	38383697	38404587
SPRED3_chr19_38383697_38404587	0/0	c0007	1233	1	1	0	0	0	0	copy fasta	SPRED3	chr19	38383697	38404587
SPRED3_chr19_38383697_38404587	0/0	c0008	1233	1	0	0	1	0	0	copy fasta	SPRED3	chr19	38383697	38404587