JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SPRED3_chr19_38383697_38404587	0/0	c0009	1233	1	1	0	0	0	0	copy fasta	SPRED3	chr19	38383697	38404587
SPRED3_chr19_38383697_38404587	0/0	c0010	1233	1	0	0	0	0	1	copy fasta	SPRED3	chr19	38383697	38404587
SPRED3_chr19_38383697_38404587	0/0	c0011	1233	1	0	0	1	0	0	copy fasta	SPRED3	chr19	38383697	38404587
SPRING1_chr12_116705171_116743069	1/1	c0001	618	354	85	47	175	13	32	copy fasta	SPRING1	chr12	116705171	116743069
SPRING1_chr12_116705171_116743069	0/0	c0002	618	2	0	2	0	0	0	copy fasta	SPRING1	chr12	116705171	116743069
SPRING1_chr12_116705171_116743069	0/0	c0003	618	2	0	1	0	1	0	copy fasta	SPRING1	chr12	116705171	116743069
SPRING1_chr12_116705171_116743069	0/0	c0004	618	1	0	0	1	0	0	copy fasta	SPRING1	chr12	116705171	116743069
SPRING1_chr12_116705171_116743069	0/0	c0005	618	1	1	0	0	0	0	copy fasta	SPRING1	chr12	116705171	116743069
SPRING1_chr12_116705171_116743069	0/0	c0006	618	1	1	0	0	0	0	copy fasta	SPRING1	chr12	116705171	116743069
SPRING1_chr12_116705171_116743069	0/0	c0007	618	1	1	0	0	0	0	copy fasta	SPRING1	chr12	116705171	116743069
SPRN_chr10_133415666_133429625	0/1	c0001	456	216	19	43	113	10	30	copy fasta	SPRN	chr10	133415666	133429625
SPRN_chr10_133415666_133429625	0/0	c0002	456	123	16	24	65	6	12	copy fasta	SPRN	chr10	133415666	133429625
SPRN_chr10_133415666_133429625	0/0	c0003	456	69	44	14	7	2	2	copy fasta	SPRN	chr10	133415666	133429625
SPRN_chr10_133415666_133429625	0/0	c0004	444	33	0	0	32	0	1	copy fasta	SPRN	chr10	133415666	133429625
SPRN_chr10_133415666_133429625	0/0	c0005	468	8	8	0	0	0	0	copy fasta	SPRN	chr10	133415666	133429625
SPRN_chr10_133415666_133429625	1/0	c0006	456	8	6	1	0	0	0	copy fasta	SPRN	chr10	133415666	133429625
SPRN_chr10_133415666_133429625	0/0	c0007	456	7	0	0	7	0	0	copy fasta	SPRN	chr10	133415666	133429625
SPRN_chr10_133415666_133429625	0/0	c0008	444	2	2	0	0	0	0	copy fasta	SPRN	chr10	133415666	133429625
SPRN_chr10_133415666_133429625	0/0	c0009	456	1	1	0	0	0	0	copy fasta	SPRN	chr10	133415666	133429625
SPRN_chr10_133415666_133429625	0/0	c0010	456	1	0	0	1	0	0	copy fasta	SPRN	chr10	133415666	133429625
SPRN_chr10_133415666_133429625	0/0	c0011	456	1	0	1	0	0	0	copy fasta	SPRN	chr10	133415666	133429625
SPRN_chr10_133415666_133429625	0/0	c0012	456	1	0	0	1	0	0	copy fasta	SPRN	chr10	133415666	133429625
SPRN_chr10_133415666_133429625	0/0	c0013	456	1	0	0	1	0	0	copy fasta	SPRN	chr10	133415666	133429625
SPRN_chr10_133415666_133429625	0/0	c0014	444	1	0	1	0	0	0	copy fasta	SPRN	chr10	133415666	133429625
SPRN_chr10_133415666_133429625	0/0	c0015	456	1	0	0	1	0	0	copy fasta	SPRN	chr10	133415666	133429625
SPRN_chr10_133415666_133429625	0/0	c0016	456	1	0	0	0	0	1	copy fasta	SPRN	chr10	133415666	133429625
SPRR1A_chr1_152979081_152990814	0/1	c0001	270	215	40	29	114	6	25	copy fasta	SPRR1A	chr1	152979081	152990814
SPRR1A_chr1_152979081_152990814	1/0	c0002	270	153	27	37	67	8	13	copy fasta	SPRR1A	chr1	152979081	152990814
SPRR1A_chr1_152979081_152990814	0/0	c0003	270	19	15	0	4	0	0	copy fasta	SPRR1A	chr1	152979081	152990814
SPRR1A_chr1_152979081_152990814	0/0	c0004	270	8	8	0	0	0	0	copy fasta	SPRR1A	chr1	152979081	152990814
SPRR1A_chr1_152979081_152990814	0/0	c0005	246	3	3	0	0	0	0	copy fasta	SPRR1A	chr1	152979081	152990814
SPRR1A_chr1_152979081_152990814	0/0	c0006	246	3	3	0	0	0	0	copy fasta	SPRR1A	chr1	152979081	152990814
SPRR1A_chr1_152979081_152990814	0/0	c0007	270	1	0	0	1	0	0	copy fasta	SPRR1A	chr1	152979081	152990814
SPRR1B_chr1_153026203_153037900	1/0	c0001	270	221	46	45	96	11	22	copy fasta	SPRR1B	chr1	153026203	153037900
SPRR1B_chr1_153026203_153037900	0/1	c0002	270	218	38	33	116	7	23	copy fasta	SPRR1B	chr1	153026203	153037900
SPRR1B_chr1_153026203_153037900	0/0	c0003	270	3	3	0	0	0	0	copy fasta	SPRR1B	chr1	153026203	153037900
SPRR1B_chr1_153026203_153037900	0/0	c0004	270	1	1	0	0	0	0	copy fasta	SPRR1B	chr1	153026203	153037900
SPRR1B_chr1_153026203_153037900	0/0	c0005	198	1	0	0	0	0	1	copy fasta	SPRR1B	chr1	153026203	153037900
SPRR2A_chr1_153051120_153062512	1/0	c0001	219	350	63	64	184	9	29	copy fasta	SPRR2A	chr1	153051120	153062512
SPRR2A_chr1_153051120_153062512	0/1	c0002	219	82	13	19	30	5	14	copy fasta	SPRR2A	chr1	153051120	153062512
SPRR2A_chr1_153051120_153062512	0/0	c0003	219	8	8	0	0	0	0	copy fasta	SPRR2A	chr1	153051120	153062512
SPRR2A_chr1_153051120_153062512	0/0	c0004	219	1	0	1	0	0	0	copy fasta	SPRR2A	chr1	153051120	153062512
SPRR2A_chr1_153051120_153062512	0/0	c0005	219	1	0	0	0	0	1	copy fasta	SPRR2A	chr1	153051120	153062512
SPRR2B_chr1_153065226_153076611	1/1	c0001	219	421	92	74	197	16	40	copy fasta	SPRR2B	chr1	153065226	153076611
SPRR2B_chr1_153065226_153076611	0/0	c0002	219	5	0	0	5	0	0	copy fasta	SPRR2B	chr1	153065226	153076611
SPRR2B_chr1_153065226_153076611	0/0	c0003	219	3	0	0	3	0	0	copy fasta	SPRR2B	chr1	153065226	153076611
SPRR2B_chr1_153065226_153076611	0/0	c0004	64	1	0	0	1	0	0	copy fasta	SPRR2B	chr1	153065226	153076611
SPRR2D_chr1_153034732_153046120	1/0	c0001	219	325	79	69	120	16	40	copy fasta	SPRR2D	chr1	153034732	153046120
SPRR2D_chr1_153034732_153046120	0/0	c0002	219	124	11	13	94	0	6	copy fasta	SPRR2D	chr1	153034732	153046120
SPRR2D_chr1_153034732_153046120	0/0	c0003	219	2	0	0	2	0	0	copy fasta	SPRR2D	chr1	153034732	153046120