JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
STAC_chr3_36375504_36553007	0/0	c0004	1209	6	4	0	2	0	0	copy fasta	STAC	chr3	36375504	36553007
STAC_chr3_36375504_36553007	0/0	c0005	1209	1	0	1	0	0	0	copy fasta	STAC	chr3	36375504	36553007
STAC_chr3_36375504_36553007	0/0	c0006	1209	1	1	0	0	0	0	copy fasta	STAC	chr3	36375504	36553007
STAC_chr3_36375504_36553007	0/0	c0007	1209	1	0	0	1	0	0	copy fasta	STAC	chr3	36375504	36553007
STAC_chr3_36375504_36553007	0/0	c0008	1209	1	0	1	0	0	0	copy fasta	STAC	chr3	36375504	36553007
STAC_chr3_36375504_36553007	0/0	c0009	1209	1	0	0	0	1	0	copy fasta	STAC	chr3	36375504	36553007
STAC_chr3_36375504_36553007	0/0	c0010	1209	1	0	1	0	0	0	copy fasta	STAC	chr3	36375504	36553007
STAC_chr3_36375504_36553007	0/0	c0011	1209	1	1	0	0	0	0	copy fasta	STAC	chr3	36375504	36553007
STAG1_chr3_136331236_136757378	1/1	c0001	3777	159	32	32	58	12	23	copy fasta	STAG1	chr3	136331236	136757378
STAG1_chr3_136331236_136757378	0/0	c0002	3777	57	20	17	5	3	12	copy fasta	STAG1	chr3	136331236	136757378
STAG1_chr3_136331236_136757378	0/0	c0003	3777	19	17	2	0	0	0	copy fasta	STAG1	chr3	136331236	136757378
STAG1_chr3_136331236_136757378	0/0	c0004	3777	1	1	0	0	0	0	copy fasta	STAG1	chr3	136331236	136757378
STAG1_chr3_136331236_136757378	0/0	c0005	3777	1	0	0	0	1	0	copy fasta	STAG1	chr3	136331236	136757378
STAG1_chr3_136331236_136757378	0/0	c0006	3777	1	0	0	0	0	1	copy fasta	STAG1	chr3	136331236	136757378
STAG1_chr3_136331236_136757378	0/0	c0007	3777	1	0	1	0	0	0	copy fasta	STAG1	chr3	136331236	136757378
STAG1_chr3_136331236_136757378	0/0	c0008	3777	1	0	0	1	0	0	copy fasta	STAG1	chr3	136331236	136757378
STAG2_chrX_123956706_124107656	1/1	c0001	3807	267	66	43	119	7	30	copy fasta	STAG2	chrX	123956706	124107656
STAG2_chrX_123956706_124107656	0/0	c0002	3807	3	2	1	0	0	0	copy fasta	STAG2	chrX	123956706	124107656
STAG2_chrX_123956706_124107656	0/0	c0003	3807	2	2	0	0	0	0	copy fasta	STAG2	chrX	123956706	124107656
STAG2_chrX_123956706_124107656	0/0	c0004	3806	1	0	0	1	0	0	copy fasta	STAG2	chrX	123956706	124107656
STAG2_chrX_123956706_124107656	0/0	c0005	3815	1	0	0	1	0	0	copy fasta	STAG2	chrX	123956706	124107656
STAG2_chrX_123956706_124107656	0/0	c0006	3808	1	0	0	1	0	0	copy fasta	STAG2	chrX	123956706	124107656
STAG2_chrX_123956706_124107656	0/0	c0007	3807	1	0	0	1	0	0	copy fasta	STAG2	chrX	123956706	124107656
STAG3_chr7_100172918_100219381	1/1	c0001	3681	148	43	19	49	9	26	copy fasta	STAG3	chr7	100172918	100219381
STAG3_chr7_100172918_100219381	0/0	c0002	3681	133	34	20	61	3	15	copy fasta	STAG3	chr7	100172918	100219381
STAG3_chr7_100172918_100219381	0/0	c0003	3681	27	0	5	12	4	6	copy fasta	STAG3	chr7	100172918	100219381
STAG3_chr7_100172918_100219381	0/0	c0004	3681	7	0	0	7	0	0	copy fasta	STAG3	chr7	100172918	100219381
STAG3_chr7_100172918_100219381	0/0	c0005	3681	1	0	0	1	0	0	copy fasta	STAG3	chr7	100172918	100219381
STAG3_chr7_100172918_100219381	0/0	c0006	3681	1	0	0	1	0	0	copy fasta	STAG3	chr7	100172918	100219381
STAG3_chr7_100172918_100219381	0/0	c0007	3681	1	0	0	1	0	0	copy fasta	STAG3	chr7	100172918	100219381
STAG3_chr7_100172918_100219381	0/0	c0008	3681	1	0	0	1	0	0	copy fasta	STAG3	chr7	100172918	100219381
STAG3_chr7_100172918_100219381	0/0	c0009	3681	1	0	0	1	0	0	copy fasta	STAG3	chr7	100172918	100219381
STAG3_chr7_100172918_100219381	0/0	c0010	3681	1	1	0	0	0	0	copy fasta	STAG3	chr7	100172918	100219381
STAG3_chr7_100172918_100219381	0/0	c0011	3681	1	0	0	0	0	1	copy fasta	STAG3	chr7	100172918	100219381
STAM2_chr2_152111801_152180763	1/1	c0001	1578	354	86	64	144	14	44	copy fasta	STAM2	chr2	152111801	152180763
STAM2_chr2_152111801_152180763	0/0	c0002	1578	3	3	0	0	0	0	copy fasta	STAM2	chr2	152111801	152180763
STAM2_chr2_152111801_152180763	0/0	c0003	1578	2	0	0	2	0	0	copy fasta	STAM2	chr2	152111801	152180763
STAM2_chr2_152111801_152180763	0/0	c0004	1578	1	1	0	0	0	0	copy fasta	STAM2	chr2	152111801	152180763
STAMBPL1_chr10_88875245_88928487	1/0	c0001	1311	329	65	49	168	14	32	copy fasta	STAMBPL1	chr10	88875245	88928487
STAMBPL1_chr10_88875245_88928487	0/0	c0002	1311	24	13	7	0	1	3	copy fasta	STAMBPL1	chr10	88875245	88928487
STAMBPL1_chr10_88875245_88928487	0/0	c0003	1311	11	2	0	7	0	2	copy fasta	STAMBPL1	chr10	88875245	88928487
STAMBPL1_chr10_88875245_88928487	0/1	c0004	1311	8	1	3	0	2	1	copy fasta	STAMBPL1	chr10	88875245	88928487
STAMBPL1_chr10_88875245_88928487	0/0	c0005	1311	5	5	0	0	0	0	copy fasta	STAMBPL1	chr10	88875245	88928487
STAMBPL1_chr10_88875245_88928487	0/0	c0006	1311	4	1	3	0	0	0	copy fasta	STAMBPL1	chr10	88875245	88928487
STAMBPL1_chr10_88875245_88928487	0/0	c0007	1311	3	2	1	0	0	0	copy fasta	STAMBPL1	chr10	88875245	88928487
STAMBPL1_chr10_88875245_88928487	0/0	c0008	1311	2	0	1	0	1	0	copy fasta	STAMBPL1	chr10	88875245	88928487
STAMBPL1_chr10_88875245_88928487	0/0	c0009	1311	1	1	0	0	0	0	copy fasta	STAMBPL1	chr10	88875245	88928487
STAMBPL1_chr10_88875245_88928487	0/0	c0010	1311	1	0	0	1	0	0	copy fasta	STAMBPL1	chr10	88875245	88928487
STAMBP_chr2_73823961_73872168	1/1	c0001	1275	308	61	62	138	14	31	copy fasta	STAMBP	chr2	73823961	73872168
STAMBP_chr2_73823961_73872168	0/0	c0002	1275	49	31	7	11	0	0	copy fasta	STAMBP	chr2	73823961	73872168