JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
AZU1_chr19_822837_837018	0/0	c0017	706	1	0	0	1	0	0	copy fasta	AZU1	chr19	822837	837018
B2M_chr15_44706517_44723145	0/1	c0001	360	385	86	78	156	16	48	copy fasta	B2M	chr15	44706517	44723145
B3GALNT1_chr3_161078883_161110349	1/1	c0001	996	368	92	68	163	12	31	copy fasta	B3GALNT1	chr3	161078883	161110349
B3GALNT1_chr3_161078883_161110349	0/0	c0002	996	32	0	8	17	0	7	copy fasta	B3GALNT1	chr3	161078883	161110349
B3GALNT2_chr1_235442190_235509452	1/1	c0001	1503	248	49	45	117	4	31	copy fasta	B3GALNT2	chr1	235442190	235509452
B3GALNT2_chr1_235442190_235509452	0/0	c0002	1503	86	34	19	22	4	7	copy fasta	B3GALNT2	chr1	235442190	235509452
B3GALNT2_chr1_235442190_235509452	0/0	c0003	1503	7	7	0	0	0	0	copy fasta	B3GALNT2	chr1	235442190	235509452
B3GALNT2_chr1_235442190_235509452	0/0	c0004	1503	2	0	2	0	0	0	copy fasta	B3GALNT2	chr1	235442190	235509452
B3GALNT2_chr1_235442190_235509452	0/0	c0005	1503	1	0	0	1	0	0	copy fasta	B3GALNT2	chr1	235442190	235509452
B3GALT1_chr2_167288001_167879045	1/1	c0001	981	116	49	21	26	2	16	copy fasta	B3GALT1	chr2	167288001	167879045
B3GALT1_chr2_167288001_167879045	0/0	c0002	981	1	0	1	0	0	0	copy fasta	B3GALT1	chr2	167288001	167879045
B3GALT1_chr2_167288001_167879045	0/0	c0003	981	1	1	0	0	0	0	copy fasta	B3GALT1	chr2	167288001	167879045
B3GALT2_chr1_193173730_193191613	1/1	c0001	1269	376	89	66	172	13	34	copy fasta	B3GALT2	chr1	193173730	193191613
B3GALT2_chr1_193173730_193191613	0/0	c0002	1269	12	5	6	0	1	0	copy fasta	B3GALT2	chr1	193173730	193191613
B3GALT2_chr1_193173730_193191613	0/0	c0003	1269	6	0	6	0	0	0	copy fasta	B3GALT2	chr1	193173730	193191613
B3GALT2_chr1_193173730_193191613	0/0	c0004	1269	2	0	0	2	0	0	copy fasta	B3GALT2	chr1	193173730	193191613
B3GALT2_chr1_193173730_193191613	0/0	c0005	1269	1	0	0	1	0	0	copy fasta	B3GALT2	chr1	193173730	193191613
B3GALT2_chr1_193173730_193191613	0/0	c0006	1269	1	0	0	1	0	0	copy fasta	B3GALT2	chr1	193173730	193191613
B3GALT4_chr6_33272123_33283825	0/1	c0001	1137	350	90	71	143	14	31	copy fasta	B3GALT4	chr6	33272123	33283825
B3GALT4_chr6_33272123_33283825	0/0	c0002	1137	3	3	0	0	0	0	copy fasta	B3GALT4	chr6	33272123	33283825
B3GALT4_chr6_33272123_33283825	0/0	c0003	1137	3	0	0	3	0	0	copy fasta	B3GALT4	chr6	33272123	33283825
B3GALT4_chr6_33272123_33283825	0/0	c0004	1137	3	3	0	0	0	0	copy fasta	B3GALT4	chr6	33272123	33283825
B3GALT4_chr6_33272123_33283825	0/0	c0005	1137	1	0	1	0	0	0	copy fasta	B3GALT4	chr6	33272123	33283825
B3GALT4_chr6_33272123_33283825	0/0	c0006	1137	1	0	0	0	0	1	copy fasta	B3GALT4	chr6	33272123	33283825
B3GALT4_chr6_33272123_33283825	0/0	c0007	1137	1	0	0	1	0	0	copy fasta	B3GALT4	chr6	33272123	33283825
B3GALT4_chr6_33272123_33283825	0/0	c0008	1137	1	0	0	1	0	0	copy fasta	B3GALT4	chr6	33272123	33283825
B3GALT5_chr21_39607940_39678137	0/1	c0001	933	188	30	42	78	10	27	copy fasta	B3GALT5	chr21	39607940	39678137
B3GALT5_chr21_39607940_39678137	1/0	c0002	933	133	49	18	50	5	10	copy fasta	B3GALT5	chr21	39607940	39678137
B3GALT5_chr21_39607940_39678137	0/0	c0003	933	8	8	0	0	0	0	copy fasta	B3GALT5	chr21	39607940	39678137
B3GALT5_chr21_39607940_39678137	0/0	c0004	933	3	0	2	0	1	0	copy fasta	B3GALT5	chr21	39607940	39678137
B3GALT5_chr21_39607940_39678137	0/0	c0005	933	2	2	0	0	0	0	copy fasta	B3GALT5	chr21	39607940	39678137
B3GALT5_chr21_39607940_39678137	0/0	c0006	933	1	0	0	0	0	1	copy fasta	B3GALT5	chr21	39607940	39678137
B3GALT5_chr21_39607940_39678137	0/0	c0007	933	1	1	0	0	0	0	copy fasta	B3GALT5	chr21	39607940	39678137
B3GALT6_chr1_1227237_1240041	1/1	c0001	990	276	60	56	118	9	31	copy fasta	B3GALT6	chr1	1227237	1240041
B3GALT6_chr1_1227237_1240041	0/0	c0002	990	47	8	5	28	4	2	copy fasta	B3GALT6	chr1	1227237	1240041
B3GALT6_chr1_1227237_1240041	0/0	c0003	990	16	13	3	0	0	0	copy fasta	B3GALT6	chr1	1227237	1240041
B3GALT6_chr1_1227237_1240041	0/0	c0004	990	15	8	1	2	1	3	copy fasta	B3GALT6	chr1	1227237	1240041
B3GALT6_chr1_1227237_1240041	0/0	c0005	1005	3	3	0	0	0	0	copy fasta	B3GALT6	chr1	1227237	1240041
B3GALT6_chr1_1227237_1240041	0/0	c0006	990	2	2	0	0	0	0	copy fasta	B3GALT6	chr1	1227237	1240041
B3GALT6_chr1_1227237_1240041	0/0	c0007	990	1	1	0	0	0	0	copy fasta	B3GALT6	chr1	1227237	1240041
B3GALT6_chr1_1227237_1240041	0/0	c0008	990	1	0	0	0	0	1	copy fasta	B3GALT6	chr1	1227237	1240041
B3GALT6_chr1_1227237_1240041	0/0	c0009	990	1	1	0	0	0	0	copy fasta	B3GALT6	chr1	1227237	1240041
B3GALT6_chr1_1227237_1240041	0/0	c0010	990	1	0	0	0	0	1	copy fasta	B3GALT6	chr1	1227237	1240041
B3GALT6_chr1_1227237_1240041	0/0	c0011	990	1	0	1	0	0	0	copy fasta	B3GALT6	chr1	1227237	1240041
B3GALT6_chr1_1227237_1240041	0/0	c0012	990	1	0	0	1	0	0	copy fasta	B3GALT6	chr1	1227237	1240041
B3GALT6_chr1_1227237_1240041	0/0	c0013	990	1	0	0	1	0	0	copy fasta	B3GALT6	chr1	1227237	1240041
B3GALT9_chr9_120788467_120806787	1/1	c0001	1110	360	76	57	196	11	18	copy fasta	B3GALT9	chr9	120788467	120806787
B3GALT9_chr9_120788467_120806787	0/0	c0002	1110	33	7	11	8	3	4	copy fasta	B3GALT9	chr9	120788467	120806787
B3GALT9_chr9_120788467_120806787	0/0	c0003	1110	3	3	0	0	0	0	copy fasta	B3GALT9	chr9	120788467	120806787
B3GALT9_chr9_120788467_120806787	0/0	c0004	1110	2	0	0	2	0	0	copy fasta	B3GALT9	chr9	120788467	120806787