JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SYT13_chr11_45235302_45291341	0/0	c0008	1281	1	0	1	0	0	0	copy fasta	SYT13	chr11	45235302	45291341
SYT13_chr11_45235302_45291341	0/0	c0009	1281	1	1	0	0	0	0	copy fasta	SYT13	chr11	45235302	45291341
SYT13_chr11_45235302_45291341	0/0	c0010	1281	1	1	0	0	0	0	copy fasta	SYT13	chr11	45235302	45291341
SYT13_chr11_45235302_45291341	0/0	c0011	1281	1	0	0	0	0	1	copy fasta	SYT13	chr11	45235302	45291341
SYT13_chr11_45235302_45291341	0/0	c0012	1281	1	1	0	0	0	0	copy fasta	SYT13	chr11	45235302	45291341
SYT14_chr1_209933217_210176315	1/1	c0001	1725	318	73	68	140	6	29	copy fasta	SYT14	chr1	209933217	210176315
SYT14_chr1_209933217_210176315	0/0	c0002	1722	22	0	3	8	4	7	copy fasta	SYT14	chr1	209933217	210176315
SYT14_chr1_209933217_210176315	0/0	c0003	1722	13	0	0	13	0	0	copy fasta	SYT14	chr1	209933217	210176315
SYT14_chr1_209933217_210176315	0/0	c0004	1725	2	2	0	0	0	0	copy fasta	SYT14	chr1	209933217	210176315
SYT14_chr1_209933217_210176315	0/0	c0005	1725	2	1	1	0	0	0	copy fasta	SYT14	chr1	209933217	210176315
SYT14_chr1_209933217_210176315	0/0	c0006	1725	1	0	0	1	0	0	copy fasta	SYT14	chr1	209933217	210176315
SYT15B_chr10_47739717_47768592	0/0	c0001	1266	159	24	40	64	9	22	copy fasta	SYT15B	chr10	47739717	47768592
SYT15B_chr10_47739717_47768592	0/0	c0002	1266	109	22	12	70	2	3	copy fasta	SYT15B	chr10	47739717	47768592
SYT15B_chr10_47739717_47768592	0/0	c0003	1266	33	2	2	28	0	1	copy fasta	SYT15B	chr10	47739717	47768592
SYT15B_chr10_47739717_47768592	0/0	c0004	1266	11	5	1	4	0	1	copy fasta	SYT15B	chr10	47739717	47768592
SYT15B_chr10_47739717_47768592	0/0	c0005	1266	7	5	2	0	0	0	copy fasta	SYT15B	chr10	47739717	47768592
SYT15B_chr10_47739717_47768592	0/0	c0006	1266	6	3	3	0	0	0	copy fasta	SYT15B	chr10	47739717	47768592
SYT15B_chr10_47739717_47768592	0/0	c0007	1266	2	2	0	0	0	0	copy fasta	SYT15B	chr10	47739717	47768592
SYT15B_chr10_47739717_47768592	0/0	c0008	1266	1	0	0	0	0	1	copy fasta	SYT15B	chr10	47739717	47768592
SYT15B_chr10_47739717_47768592	0/0	c0009	1266	1	1	0	0	0	0	copy fasta	SYT15B	chr10	47739717	47768592
SYT15B_chr10_47739717_47768592	0/0	c0010	1266	1	1	0	0	0	0	copy fasta	SYT15B	chr10	47739717	47768592
SYT15B_chr10_47739717_47768592	0/0	c0011	1266	1	0	0	1	0	0	copy fasta	SYT15B	chr10	47739717	47768592
SYT15B_chr10_47739717_47768592	0/0	c0012	1266	1	1	0	0	0	0	copy fasta	SYT15B	chr10	47739717	47768592
SYT15B_chr10_47739717_47768592	0/0	c0013	1266	1	0	0	1	0	0	copy fasta	SYT15B	chr10	47739717	47768592
SYT15B_chr10_47739717_47768592	0/0	c0014	1266	1	0	0	1	0	0	copy fasta	SYT15B	chr10	47739717	47768592
SYT15B_chr10_47739717_47768592	0/0	c0015	1266	1	0	0	0	0	1	copy fasta	SYT15B	chr10	47739717	47768592
SYT15B_chr10_47739717_47768592	0/0	c0016	1266	1	0	0	0	1	0	copy fasta	SYT15B	chr10	47739717	47768592
SYT15B_chr10_47739717_47768592	0/0	c0017	1266	1	1	0	0	0	0	copy fasta	SYT15B	chr10	47739717	47768592
SYT15B_chr10_47739717_47768592	0/0	c0018	1266	1	0	0	1	0	0	copy fasta	SYT15B	chr10	47739717	47768592
SYT15B_chr10_47739717_47768592	0/0	c0019	1266	1	0	0	0	0	1	copy fasta	SYT15B	chr10	47739717	47768592
SYT15B_chr10_47739717_47768592	0/0	c0020	1266	1	1	0	0	0	0	copy fasta	SYT15B	chr10	47739717	47768592
SYT15_chr10_46574128_46597064	0/0	c0001	1266	213	31	31	126	3	22	copy fasta	SYT15	chr10	46574128	46597064
SYT15_chr10_46574128_46597064	0/0	c0002	1266	32	7	15	0	5	5	copy fasta	SYT15	chr10	46574128	46597064
SYT15_chr10_46574128_46597064	0/0	c0003	1266	9	6	3	0	0	0	copy fasta	SYT15	chr10	46574128	46597064
SYT15_chr10_46574128_46597064	0/0	c0004	1266	8	1	4	0	0	3	copy fasta	SYT15	chr10	46574128	46597064
SYT15_chr10_46574128_46597064	0/0	c0005	1266	2	1	1	0	0	0	copy fasta	SYT15	chr10	46574128	46597064
SYT15_chr10_46574128_46597064	0/0	c0006	1266	2	1	1	0	0	0	copy fasta	SYT15	chr10	46574128	46597064
SYT15_chr10_46574128_46597064	0/0	c0007	1266	2	1	1	0	0	0	copy fasta	SYT15	chr10	46574128	46597064
SYT15_chr10_46574128_46597064	0/0	c0008	1266	1	1	0	0	0	0	copy fasta	SYT15	chr10	46574128	46597064
SYT15_chr10_46574128_46597064	0/0	c0009	1266	1	0	0	0	1	0	copy fasta	SYT15	chr10	46574128	46597064
SYT15_chr10_46574128_46597064	0/0	c0010	1266	1	0	1	0	0	0	copy fasta	SYT15	chr10	46574128	46597064
SYT15_chr10_46574128_46597064	0/0	c0011	1266	1	0	0	1	0	0	copy fasta	SYT15	chr10	46574128	46597064
SYT15_chr10_46574128_46597064	0/0	c0012	1266	1	1	0	0	0	0	copy fasta	SYT15	chr10	46574128	46597064
SYT15_chr10_46574128_46597064	0/0	c0013	1266	1	1	0	0	0	0	copy fasta	SYT15	chr10	46574128	46597064
SYT15_chr10_46574128_46597064	0/0	c0014	1266	1	0	1	0	0	0	copy fasta	SYT15	chr10	46574128	46597064
SYT15_chr10_46574128_46597064	0/0	c0015	1266	1	0	0	0	1	0	copy fasta	SYT15	chr10	46574128	46597064
SYT15_chr10_46574128_46597064	0/0	c0016	1266	1	0	1	0	0	0	copy fasta	SYT15	chr10	46574128	46597064
SYT15_chr10_46574128_46597064	0/0	c0017	1266	1	0	0	1	0	0	copy fasta	SYT15	chr10	46574128	46597064
SYT15_chr10_46574128_46597064	0/0	c0018	1266	1	1	0	0	0	0	copy fasta	SYT15	chr10	46574128	46597064
SYT15_chr10_46574128_46597064	0/0	c0019	1266	1	1	0	0	0	0	copy fasta	SYT15	chr10	46574128	46597064