JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TAF11L8_chr5_17585364_17595960	0/0	c0003	597	3	0	1	2	0	0	copy fasta	TAF11L8	chr5	17585364	17595960
TAF11L8_chr5_17585364_17595960	0/0	c0004	597	1	0	0	1	0	0	copy fasta	TAF11L8	chr5	17585364	17595960
TAF11L8_chr5_17585364_17595960	0/0	c0005	597	1	1	0	0	0	0	copy fasta	TAF11L8	chr5	17585364	17595960
TAF11L8_chr5_17585364_17595960	0/0	c0006	597	1	0	0	1	0	0	copy fasta	TAF11L8	chr5	17585364	17595960
TAF11L8_chr5_17585364_17595960	0/0	c0007	597	1	1	0	0	0	0	copy fasta	TAF11L8	chr5	17585364	17595960
TAF11L8_chr5_17585364_17595960	0/0	c0008	597	1	1	0	0	0	0	copy fasta	TAF11L8	chr5	17585364	17595960
TAF11L8_chr5_17585364_17595960	0/0	c0009	597	1	0	1	0	0	0	copy fasta	TAF11L8	chr5	17585364	17595960
TAF11L8_chr5_17585364_17595960	0/0	c0010	597	1	0	0	1	0	0	copy fasta	TAF11L8	chr5	17585364	17595960
TAF11L9_chr5_17588798_17599394	0/0	c0001	597	105	14	17	64	0	10	copy fasta	TAF11L9	chr5	17588798	17599394
TAF11L9_chr5_17588798_17599394	0/0	c0002	597	2	0	1	1	0	0	copy fasta	TAF11L9	chr5	17588798	17599394
TAF11L9_chr5_17588798_17599394	0/0	c0003	597	2	2	0	0	0	0	copy fasta	TAF11L9	chr5	17588798	17599394
TAF11L9_chr5_17588798_17599394	0/0	c0004	597	1	1	0	0	0	0	copy fasta	TAF11L9	chr5	17588798	17599394
TAF11L9_chr5_17588798_17599394	0/0	c0005	597	1	0	0	1	0	0	copy fasta	TAF11L9	chr5	17588798	17599394
TAF11L9_chr5_17588798_17599394	0/0	c0006	597	1	1	0	0	0	0	copy fasta	TAF11L9	chr5	17588798	17599394
TAF11_chr6_34872462_34893042	1/1	c0001	636	418	90	73	201	14	38	copy fasta	TAF11	chr6	34872462	34893042
TAF11_chr6_34872462_34893042	0/0	c0002	636	5	0	0	5	0	0	copy fasta	TAF11	chr6	34872462	34893042
TAF11_chr6_34872462_34893042	0/0	c0003	636	3	0	2	1	0	0	copy fasta	TAF11	chr6	34872462	34893042
TAF11_chr6_34872462_34893042	0/0	c0004	636	1	0	1	0	0	0	copy fasta	TAF11	chr6	34872462	34893042
TAF11_chr6_34872462_34893042	0/0	c0005	636	1	0	0	1	0	0	copy fasta	TAF11	chr6	34872462	34893042
TAF12_chr1_28597850_28648067	1/1	c0001	486	302	82	66	96	16	40	copy fasta	TAF12	chr1	28597850	28648067
TAF13_chr1_109059140_109081003	1/1	c0001	375	410	98	74	176	14	46	copy fasta	TAF13	chr1	109059140	109081003
TAF13_chr1_109059140_109081003	0/0	c0002	375	4	0	0	4	0	0	copy fasta	TAF13	chr1	109059140	109081003
TAF15_chr17_35804484_35852242	0/0	c0001	1779	250	59	44	122	9	16	copy fasta	TAF15	chr17	35804484	35852242
TAF15_chr17_35804484_35852242	0/0	c0002	1779	46	10	17	11	0	8	copy fasta	TAF15	chr17	35804484	35852242
TAF15_chr17_35804484_35852242	0/1	c0003	1779	12	0	6	0	1	4	copy fasta	TAF15	chr17	35804484	35852242
TAF15_chr17_35804484_35852242	0/0	c0004	1779	2	2	0	0	0	0	copy fasta	TAF15	chr17	35804484	35852242
TAF15_chr17_35804484_35852242	0/0	c0005	1806	2	0	0	2	0	0	copy fasta	TAF15	chr17	35804484	35852242
TAF15_chr17_35804484_35852242	0/0	c0006	1779	1	1	0	0	0	0	copy fasta	TAF15	chr17	35804484	35852242
TAF15_chr17_35804484_35852242	0/0	c0007	1779	1	0	0	1	0	0	copy fasta	TAF15	chr17	35804484	35852242
TAF15_chr17_35804484_35852242	0/0	c0008	1800	1	0	0	1	0	0	copy fasta	TAF15	chr17	35804484	35852242
TAF15_chr17_35804484_35852242	0/0	c0009	1755	1	0	1	0	0	0	copy fasta	TAF15	chr17	35804484	35852242
TAF15_chr17_35804484_35852242	0/0	c0010	1779	1	1	0	0	0	0	copy fasta	TAF15	chr17	35804484	35852242
TAF15_chr17_35804484_35852242	0/0	c0011	1779	1	1	0	0	0	0	copy fasta	TAF15	chr17	35804484	35852242
TAF15_chr17_35804484_35852242	0/0	c0012	1800	1	0	0	1	0	0	copy fasta	TAF15	chr17	35804484	35852242
TAF15_chr17_35804484_35852242	0/0	c0013	1779	1	1	0	0	0	0	copy fasta	TAF15	chr17	35804484	35852242
TAF15_chr17_35804484_35852242	0/0	c0014	1779	1	1	0	0	0	0	copy fasta	TAF15	chr17	35804484	35852242
TAF1A_chr1_222553312_222594933	1/1	c0001	1353	276	84	41	119	8	22	copy fasta	TAF1A	chr1	222553312	222594933
TAF1A_chr1_222553312_222594933	0/0	c0002	1353	89	0	15	57	4	13	copy fasta	TAF1A	chr1	222553312	222594933
TAF1A_chr1_222553312_222594933	0/0	c0003	1353	11	11	0	0	0	0	copy fasta	TAF1A	chr1	222553312	222594933
TAF1A_chr1_222553312_222594933	0/0	c0004	1353	2	2	0	0	0	0	copy fasta	TAF1A	chr1	222553312	222594933
TAF1A_chr1_222553312_222594933	0/0	c0005	1353	2	0	1	0	0	1	copy fasta	TAF1A	chr1	222553312	222594933
TAF1A_chr1_222553312_222594933	0/0	c0006	1353	1	1	0	0	0	0	copy fasta	TAF1A	chr1	222553312	222594933
TAF1A_chr1_222553312_222594933	0/0	c0007	1353	1	0	1	0	0	0	copy fasta	TAF1A	chr1	222553312	222594933
TAF1A_chr1_222553312_222594933	0/0	c0008	1353	1	0	0	1	0	0	copy fasta	TAF1A	chr1	222553312	222594933
TAF1A_chr1_222553312_222594933	0/0	c0009	1353	1	0	0	1	0	0	copy fasta	TAF1A	chr1	222553312	222594933
TAF1B_chr2_9838474_9939416	0/0	c0001	1767	80	1	16	54	2	7	copy fasta	TAF1B	chr2	9838474	9939416
TAF1B_chr2_9838474_9939416	0/1	c0002	1767	69	14	18	21	3	12	copy fasta	TAF1B	chr2	9838474	9939416
TAF1B_chr2_9838474_9939416	0/0	c0003	1767	59	0	12	38	3	6	copy fasta	TAF1B	chr2	9838474	9939416
TAF1B_chr2_9838474_9939416	0/0	c0004	1767	58	33	9	10	1	5	copy fasta	TAF1B	chr2	9838474	9939416
TAF1B_chr2_9838474_9939416	0/0	c0005	1767	40	6	3	26	2	3	copy fasta	TAF1B	chr2	9838474	9939416