JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TANC1_chr2_158963640_159237659	0/0	c0029	5586	1	1	0	0	0	0	copy fasta	TANC1	chr2	158963640	159237659
TANC1_chr2_158963640_159237659	0/0	c0030	5586	1	0	0	1	0	0	copy fasta	TANC1	chr2	158963640	159237659
TANC1_chr2_158963640_159237659	0/0	c0031	5586	1	1	0	0	0	0	copy fasta	TANC1	chr2	158963640	159237659
TANC1_chr2_158963640_159237659	0/0	c0032	5586	1	0	0	1	0	0	copy fasta	TANC1	chr2	158963640	159237659
TANC1_chr2_158963640_159237659	0/0	c0033	5586	1	0	1	0	0	0	copy fasta	TANC1	chr2	158963640	159237659
TANC1_chr2_158963640_159237659	0/0	c0034	5586	1	0	1	0	0	0	copy fasta	TANC1	chr2	158963640	159237659
TANC1_chr2_158963640_159237659	0/0	c0035	5586	1	0	1	0	0	0	copy fasta	TANC1	chr2	158963640	159237659
TANC2_chr17_62961235_63432703	0/1	c0001	6225	161	59	36	40	4	21	copy fasta	TANC2	chr17	62961235	63432703
TANC2_chr17_62961235_63432703	1/0	c0002	6225	79	7	20	34	3	14	copy fasta	TANC2	chr17	62961235	63432703
TANC2_chr17_62961235_63432703	0/0	c0003	6225	5	1	2	0	2	0	copy fasta	TANC2	chr17	62961235	63432703
TANC2_chr17_62961235_63432703	0/0	c0004	6225	2	2	0	0	0	0	copy fasta	TANC2	chr17	62961235	63432703
TANC2_chr17_62961235_63432703	0/0	c0005	6225	2	0	0	2	0	0	copy fasta	TANC2	chr17	62961235	63432703
TANC2_chr17_62961235_63432703	0/0	c0006	6225	2	0	0	2	0	0	copy fasta	TANC2	chr17	62961235	63432703
TANC2_chr17_62961235_63432703	0/0	c0007	6225	2	0	2	0	0	0	copy fasta	TANC2	chr17	62961235	63432703
TANC2_chr17_62961235_63432703	0/0	c0008	6225	2	1	0	0	1	0	copy fasta	TANC2	chr17	62961235	63432703
TANC2_chr17_62961235_63432703	0/0	c0009	6225	1	1	0	0	0	0	copy fasta	TANC2	chr17	62961235	63432703
TANC2_chr17_62961235_63432703	0/0	c0010	6225	1	1	0	0	0	0	copy fasta	TANC2	chr17	62961235	63432703
TANC2_chr17_62961235_63432703	0/0	c0011	6225	1	1	0	0	0	0	copy fasta	TANC2	chr17	62961235	63432703
TANC2_chr17_62961235_63432703	0/0	c0012	6225	1	0	1	0	0	0	copy fasta	TANC2	chr17	62961235	63432703
TANC2_chr17_62961235_63432703	0/0	c0013	6225	1	0	0	1	0	0	copy fasta	TANC2	chr17	62961235	63432703
TANC2_chr17_62961235_63432703	0/0	c0014	6225	1	0	0	1	0	0	copy fasta	TANC2	chr17	62961235	63432703
TANC2_chr17_62961235_63432703	0/0	c0015	6225	1	0	0	1	0	0	copy fasta	TANC2	chr17	62961235	63432703
TANC2_chr17_62961235_63432703	0/0	c0016	6225	1	0	1	0	0	0	copy fasta	TANC2	chr17	62961235	63432703
TANC2_chr17_62961235_63432703	0/0	c0017	6225	1	1	0	0	0	0	copy fasta	TANC2	chr17	62961235	63432703
TANC2_chr17_62961235_63432703	0/0	c0018	6225	1	0	0	0	0	1	copy fasta	TANC2	chr17	62961235	63432703
TANC2_chr17_62961235_63432703	0/0	c0019	6225	1	0	0	1	0	0	copy fasta	TANC2	chr17	62961235	63432703
TANGO2_chr22_20016110_20072164	1/1	c0001	831	358	71	65	157	18	45	copy fasta	TANGO2	chr22	20016110	20072164
TANGO2_chr22_20016110_20072164	0/0	c0002	831	14	14	0	0	0	0	copy fasta	TANGO2	chr22	20016110	20072164
TANGO2_chr22_20016110_20072164	0/0	c0003	831	10	10	0	0	0	0	copy fasta	TANGO2	chr22	20016110	20072164
TANGO2_chr22_20016110_20072164	0/0	c0004	831	5	3	2	0	0	0	copy fasta	TANGO2	chr22	20016110	20072164
TANGO2_chr22_20016110_20072164	0/0	c0005	831	2	1	0	1	0	0	copy fasta	TANGO2	chr22	20016110	20072164
TANGO2_chr22_20016110_20072164	0/0	c0006	831	1	0	1	0	0	0	copy fasta	TANGO2	chr22	20016110	20072164
TANGO2_chr22_20016110_20072164	0/0	c0007	831	1	1	0	0	0	0	copy fasta	TANGO2	chr22	20016110	20072164
TANGO2_chr22_20016110_20072164	0/0	c0008	831	1	0	0	0	0	1	copy fasta	TANGO2	chr22	20016110	20072164
TANGO6_chr16_68838531_69090182	1/1	c0001	3285	144	53	31	39	4	15	copy fasta	TANGO6	chr16	68838531	69090182
TANGO6_chr16_68838531_69090182	0/0	c0002	3285	28	0	9	18	0	1	copy fasta	TANGO6	chr16	68838531	69090182
TANGO6_chr16_68838531_69090182	0/0	c0003	3285	16	5	4	4	2	1	copy fasta	TANGO6	chr16	68838531	69090182
TANGO6_chr16_68838531_69090182	0/0	c0004	3285	5	5	0	0	0	0	copy fasta	TANGO6	chr16	68838531	69090182
TANGO6_chr16_68838531_69090182	0/0	c0005	3285	5	3	0	0	0	2	copy fasta	TANGO6	chr16	68838531	69090182
TANGO6_chr16_68838531_69090182	0/0	c0006	3285	4	4	0	0	0	0	copy fasta	TANGO6	chr16	68838531	69090182
TANGO6_chr16_68838531_69090182	0/0	c0007	3285	3	0	0	0	2	1	copy fasta	TANGO6	chr16	68838531	69090182
TANGO6_chr16_68838531_69090182	0/0	c0008	3285	2	2	0	0	0	0	copy fasta	TANGO6	chr16	68838531	69090182
TANGO6_chr16_68838531_69090182	0/0	c0009	3285	1	0	0	1	0	0	copy fasta	TANGO6	chr16	68838531	69090182
TANGO6_chr16_68838531_69090182	0/0	c0010	3285	1	1	0	0	0	0	copy fasta	TANGO6	chr16	68838531	69090182
TANGO6_chr16_68838531_69090182	0/0	c0011	3285	1	1	0	0	0	0	copy fasta	TANGO6	chr16	68838531	69090182
TANK_chr2_161155428_161241230	1/1	c0001	1278	277	59	43	121	13	39	copy fasta	TANK	chr2	161155428	161241230
TANK_chr2_161155428_161241230	0/0	c0002	1278	15	11	4	0	0	0	copy fasta	TANK	chr2	161155428	161241230
TANK_chr2_161155428_161241230	0/0	c0003	1278	11	1	0	9	1	0	copy fasta	TANK	chr2	161155428	161241230
TANK_chr2_161155428_161241230	0/0	c0004	1278	2	2	0	0	0	0	copy fasta	TANK	chr2	161155428	161241230
TANK_chr2_161155428_161241230	0/0	c0005	1278	2	2	0	0	0	0	copy fasta	TANK	chr2	161155428	161241230