JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TCAP_chr17_39660349_39671554	0/1	c0001	504	212	40	47	83	12	29	copy fasta	TCAP	chr17	39660349	39671554
TCAP_chr17_39660349_39671554	1/0	c0002	504	171	48	28	75	6	13	copy fasta	TCAP	chr17	39660349	39671554
TCAP_chr17_39660349_39671554	0/0	c0003	504	3	0	3	0	0	0	copy fasta	TCAP	chr17	39660349	39671554
TCEA1_chr8_53961556_54027448	1/1	c0001	906	309	85	60	130	6	26	copy fasta	TCEA1	chr8	53961556	54027448
TCEA1_chr8_53961556_54027448	0/0	c0002	906	2	2	0	0	0	0	copy fasta	TCEA1	chr8	53961556	54027448
TCEA1_chr8_53961556_54027448	0/0	c0003	906	1	1	0	0	0	0	copy fasta	TCEA1	chr8	53961556	54027448
TCEA1_chr8_53961556_54027448	0/0	c0004	906	1	1	0	0	0	0	copy fasta	TCEA1	chr8	53961556	54027448
TCEA1_chr8_53961556_54027448	0/0	c0005	906	1	1	0	0	0	0	copy fasta	TCEA1	chr8	53961556	54027448
TCEA2_chr20_64058198_64077347	1/1	c0001	900	373	93	79	141	16	42	copy fasta	TCEA2	chr20	64058198	64077347
TCEA2_chr20_64058198_64077347	0/0	c0002	900	5	0	0	5	0	0	copy fasta	TCEA2	chr20	64058198	64077347
TCEA2_chr20_64058198_64077347	0/0	c0003	900	2	1	1	0	0	0	copy fasta	TCEA2	chr20	64058198	64077347
TCEA2_chr20_64058198_64077347	0/0	c0004	900	2	0	0	1	0	1	copy fasta	TCEA2	chr20	64058198	64077347
TCEA2_chr20_64058198_64077347	0/0	c0005	900	1	0	0	1	0	0	copy fasta	TCEA2	chr20	64058198	64077347
TCEA2_chr20_64058198_64077347	0/0	c0006	900	1	0	0	0	0	1	copy fasta	TCEA2	chr20	64058198	64077347
TCEA3_chr1_23375909_23429748	1/1	c0001	1047	375	89	71	151	16	46	copy fasta	TCEA3	chr1	23375909	23429748
TCEA3_chr1_23375909_23429748	0/0	c0002	1047	1	1	0	0	0	0	copy fasta	TCEA3	chr1	23375909	23429748
TCEA3_chr1_23375909_23429748	0/0	c0003	1047	1	0	1	0	0	0	copy fasta	TCEA3	chr1	23375909	23429748
TCEA3_chr1_23375909_23429748	0/0	c0004	1047	1	0	0	1	0	0	copy fasta	TCEA3	chr1	23375909	23429748
TCEAL1_chrX_103623975_103635953	1/1	c0001	480	309	71	56	141	9	30	copy fasta	TCEAL1	chrX	103623975	103635953
TCEAL1_chrX_103623975_103635953	0/0	c0002	480	2	2	0	0	0	0	copy fasta	TCEAL1	chrX	103623975	103635953
TCEAL1_chrX_103623975_103635953	0/0	c0003	477	1	0	0	1	0	0	copy fasta	TCEAL1	chrX	103623975	103635953
TCEAL1_chrX_103623975_103635953	0/0	c0004	480	1	1	0	0	0	0	copy fasta	TCEAL1	chrX	103623975	103635953
TCEAL1_chrX_103623975_103635953	0/0	c0005	480	1	0	1	0	0	0	copy fasta	TCEAL1	chrX	103623975	103635953
TCEAL2_chrX_102120679_102132712	1/1	c0001	684	275	60	45	135	8	25	copy fasta	TCEAL2	chrX	102120679	102132712
TCEAL2_chrX_102120679_102132712	0/0	c0002	684	14	1	8	0	4	1	copy fasta	TCEAL2	chrX	102120679	102132712
TCEAL2_chrX_102120679_102132712	0/0	c0003	684	13	12	0	0	1	0	copy fasta	TCEAL2	chrX	102120679	102132712
TCEAL2_chrX_102120679_102132712	0/0	c0004	684	3	3	0	0	0	0	copy fasta	TCEAL2	chrX	102120679	102132712
TCEAL2_chrX_102120679_102132712	0/0	c0005	684	1	0	0	0	0	1	copy fasta	TCEAL2	chrX	102120679	102132712
TCEAL2_chrX_102120679_102132712	0/0	c0006	684	1	1	0	0	0	0	copy fasta	TCEAL2	chrX	102120679	102132712
TCEAL2_chrX_102120679_102132712	0/0	c0007	684	1	0	0	0	0	1	copy fasta	TCEAL2	chrX	102120679	102132712
TCEAL2_chrX_102120679_102132712	0/0	c0008	684	1	1	0	0	0	0	copy fasta	TCEAL2	chrX	102120679	102132712
TCEAL3_chrX_103602963_103614927	1/1	c0001	603	261	49	50	120	9	31	copy fasta	TCEAL3	chrX	103602963	103614927
TCEAL3_chrX_103602963_103614927	0/0	c0002	603	16	14	2	0	0	0	copy fasta	TCEAL3	chrX	103602963	103614927
TCEAL3_chrX_103602963_103614927	0/0	c0003	603	9	9	0	0	0	0	copy fasta	TCEAL3	chrX	103602963	103614927
TCEAL3_chrX_103602963_103614927	0/0	c0004	603	2	0	0	2	0	0	copy fasta	TCEAL3	chrX	103602963	103614927
TCEAL3_chrX_103602963_103614927	0/0	c0005	603	1	0	0	0	0	1	copy fasta	TCEAL3	chrX	103602963	103614927
TCEAL3_chrX_103602963_103614927	0/0	c0006	603	1	0	1	0	0	0	copy fasta	TCEAL3	chrX	103602963	103614927
TCEAL4_chrX_103580515_103592729	1/1	c0001	648	236	40	35	133	5	21	copy fasta	TCEAL4	chrX	103580515	103592729
TCEAL4_chrX_103580515_103592729	0/0	c0002	648	60	28	17	4	6	5	copy fasta	TCEAL4	chrX	103580515	103592729
TCEAL4_chrX_103580515_103592729	0/0	c0003	648	7	7	0	0	0	0	copy fasta	TCEAL4	chrX	103580515	103592729
TCEAL4_chrX_103580515_103592729	0/0	c0004	646	1	0	0	1	0	0	copy fasta	TCEAL4	chrX	103580515	103592729
TCEAL4_chrX_103580515_103592729	0/0	c0005	648	1	1	0	0	0	0	copy fasta	TCEAL4	chrX	103580515	103592729
TCEAL5_chrX_103268691_103281750	1/1	c0001	621	281	44	51	139	13	32	copy fasta	TCEAL5	chrX	103268691	103281750
TCEAL5_chrX_103268691_103281750	0/0	c0002	621	48	24	3	21	0	0	copy fasta	TCEAL5	chrX	103268691	103281750
TCEAL5_chrX_103268691_103281750	0/0	c0003	621	4	4	0	0	0	0	copy fasta	TCEAL5	chrX	103268691	103281750
TCEAL5_chrX_103268691_103281750	0/0	c0004	617	1	0	0	1	0	0	copy fasta	TCEAL5	chrX	103268691	103281750
TCEAL5_chrX_103268691_103281750	0/0	c0005	621	1	0	1	0	0	0	copy fasta	TCEAL5	chrX	103268691	103281750
TCEAL7_chrX_103325239_103337326	1/1	c0001	303	315	74	54	142	13	30	copy fasta	TCEAL7	chrX	103325239	103337326
TCEAL7_chrX_103325239_103337326	0/0	c0002	303	1	0	0	1	0	0	copy fasta	TCEAL7	chrX	103325239	103337326
TCEAL8_chrX_103247995_103260155	1/1	c0001	354	332	72	54	161	11	32	copy fasta	TCEAL8	chrX	103247995	103260155