JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TCP11L1_chr11_33034572_33078550	0/0	c0011	1530	1	0	0	1	0	0	copy fasta	TCP11L1	chr11	33034572	33078550
TCP11L2_chr12_106297733_106352003	0/0	c0001	1560	229	85	50	58	11	25	copy fasta	TCP11L2	chr12	106297733	106352003
TCP11L2_chr12_106297733_106352003	1/0	c0002	1560	109	4	24	60	5	15	copy fasta	TCP11L2	chr12	106297733	106352003
TCP11L2_chr12_106297733_106352003	0/0	c0003	1560	2	2	0	0	0	0	copy fasta	TCP11L2	chr12	106297733	106352003
TCP11L2_chr12_106297733_106352003	0/0	c0004	1560	2	2	0	0	0	0	copy fasta	TCP11L2	chr12	106297733	106352003
TCP11L2_chr12_106297733_106352003	0/0	c0005	1560	1	1	0	0	0	0	copy fasta	TCP11L2	chr12	106297733	106352003
TCP11L2_chr12_106297733_106352003	0/1	c0006	1560	1	0	0	0	0	0	copy fasta	TCP11L2	chr12	106297733	106352003
TCP11X1_chrX_102210301_102231795	0/0	c0001	1509	19	5	4	6	3	1	copy fasta	TCP11X1	chrX	102210301	102231795
TCP11X1_chrX_102210301_102231795	0/0	c0002	1509	10	5	4	0	0	1	copy fasta	TCP11X1	chrX	102210301	102231795
TCP11X1_chrX_102210301_102231795	0/0	c0003	1509	4	3	0	1	0	0	copy fasta	TCP11X1	chrX	102210301	102231795
TCP11X1_chrX_102210301_102231795	0/0	c0004	1509	1	0	0	0	0	1	copy fasta	TCP11X1	chrX	102210301	102231795
TCP11X1_chrX_102210301_102231795	0/0	c0005	1511	1	0	1	0	0	0	copy fasta	TCP11X1	chrX	102210301	102231795
TCP11X1_chrX_102210301_102231795	0/0	c0006	1505	1	0	0	1	0	0	copy fasta	TCP11X1	chrX	102210301	102231795
TCP11X1_chrX_102210301_102231795	0/0	c0007	1510	1	0	0	1	0	0	copy fasta	TCP11X1	chrX	102210301	102231795
TCP11X2_chrX_102455315_102476812	0/0	c0001	1509	86	28	18	27	4	9	copy fasta	TCP11X2	chrX	102455315	102476812
TCP11X2_chrX_102455315_102476812	0/0	c0002	1509	39	2	8	26	0	3	copy fasta	TCP11X2	chrX	102455315	102476812
TCP11X2_chrX_102455315_102476812	0/0	c0003	1508	4	3	0	0	0	1	copy fasta	TCP11X2	chrX	102455315	102476812
TCP11X2_chrX_102455315_102476812	0/0	c0004	1509	2	0	0	2	0	0	copy fasta	TCP11X2	chrX	102455315	102476812
TCP11X2_chrX_102455315_102476812	0/0	c0005	1507	1	0	0	0	1	0	copy fasta	TCP11X2	chrX	102455315	102476812
TCP11X2_chrX_102455315_102476812	0/0	c0006	1511	1	0	0	1	0	0	copy fasta	TCP11X2	chrX	102455315	102476812
TCP11X2_chrX_102455315_102476812	0/0	c0007	1509	1	0	0	0	0	1	copy fasta	TCP11X2	chrX	102455315	102476812
TCP11X2_chrX_102455315_102476812	0/0	c0008	1510	1	0	0	1	0	0	copy fasta	TCP11X2	chrX	102455315	102476812
TCP11X2_chrX_102455315_102476812	0/0	c0009	1508	1	0	0	1	0	0	copy fasta	TCP11X2	chrX	102455315	102476812
TCP11X2_chrX_102455315_102476812	0/0	c0010	1509	1	1	0	0	0	0	copy fasta	TCP11X2	chrX	102455315	102476812
TCP11_chr6_35113075_35146339	1/1	c0001	1512	338	55	55	178	13	35	copy fasta	TCP11	chr6	35113075	35146339
TCP11_chr6_35113075_35146339	0/0	c0002	1512	54	17	14	17	1	5	copy fasta	TCP11	chr6	35113075	35146339
TCP11_chr6_35113075_35146339	0/0	c0003	1512	8	0	0	8	0	0	copy fasta	TCP11	chr6	35113075	35146339
TCP11_chr6_35113075_35146339	0/0	c0004	1512	2	0	0	0	0	2	copy fasta	TCP11	chr6	35113075	35146339
TCP11_chr6_35113075_35146339	0/0	c0005	1512	2	2	0	0	0	0	copy fasta	TCP11	chr6	35113075	35146339
TCP11_chr6_35113075_35146339	0/0	c0006	1512	2	2	0	0	0	0	copy fasta	TCP11	chr6	35113075	35146339
TCP11_chr6_35113075_35146339	0/0	c0007	1512	1	0	1	0	0	0	copy fasta	TCP11	chr6	35113075	35146339
TCP11_chr6_35113075_35146339	0/0	c0008	1512	1	1	0	0	0	0	copy fasta	TCP11	chr6	35113075	35146339
TCP11_chr6_35113075_35146339	0/0	c0009	1512	1	1	0	0	0	0	copy fasta	TCP11	chr6	35113075	35146339
TCP11_chr6_35113075_35146339	0/0	c0010	1530	1	1	0	0	0	0	copy fasta	TCP11	chr6	35113075	35146339
TCP11_chr6_35113075_35146339	0/0	c0011	1512	1	0	0	1	0	0	copy fasta	TCP11	chr6	35113075	35146339
TCP11_chr6_35113075_35146339	0/0	c0012	1512	1	1	0	0	0	0	copy fasta	TCP11	chr6	35113075	35146339
TCP1_chr6_159773498_159794602	1/1	c0001	1671	391	84	75	174	14	42	copy fasta	TCP1	chr6	159773498	159794602
TCP1_chr6_159773498_159794602	0/0	c0002	1671	10	10	0	0	0	0	copy fasta	TCP1	chr6	159773498	159794602
TCP1_chr6_159773498_159794602	0/0	c0003	1671	1	0	1	0	0	0	copy fasta	TCP1	chr6	159773498	159794602
TCP1_chr6_159773498_159794602	0/0	c0004	1671	1	1	0	0	0	0	copy fasta	TCP1	chr6	159773498	159794602
TCP1_chr6_159773498_159794602	0/0	c0005	1671	1	1	0	0	0	0	copy fasta	TCP1	chr6	159773498	159794602
TCTA_chr3_49407423_49421476	1/1	c0001	312	348	92	68	128	18	40	copy fasta	TCTA	chr3	49407423	49421476
TCTE1_chr6_44273734_44302698	0/1	c0001	1506	174	34	43	59	11	26	copy fasta	TCTE1	chr6	44273734	44302698
TCTE1_chr6_44273734_44302698	0/0	c0002	1506	74	3	14	48	0	9	copy fasta	TCTE1	chr6	44273734	44302698
TCTE1_chr6_44273734_44302698	0/0	c0003	1506	50	0	3	44	3	0	copy fasta	TCTE1	chr6	44273734	44302698
TCTE1_chr6_44273734_44302698	1/0	c0004	1506	31	27	1	0	0	2	copy fasta	TCTE1	chr6	44273734	44302698
TCTE1_chr6_44273734_44302698	0/0	c0005	1506	12	12	0	0	0	0	copy fasta	TCTE1	chr6	44273734	44302698
TCTE1_chr6_44273734_44302698	0/0	c0006	1506	5	0	1	4	0	0	copy fasta	TCTE1	chr6	44273734	44302698
TCTE1_chr6_44273734_44302698	0/0	c0007	1506	3	2	1	0	0	0	copy fasta	TCTE1	chr6	44273734	44302698
TCTE1_chr6_44273734_44302698	0/0	c0008	1506	3	3	0	0	0	0	copy fasta	TCTE1	chr6	44273734	44302698