JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TDRD15_chr2_21118968_21149368	0/0	c0010	5805	1	0	0	1	0	0	copy fasta	TDRD15	chr2	21118968	21149368
TDRD15_chr2_21118968_21149368	0/0	c0011	5805	1	0	1	0	0	0	copy fasta	TDRD15	chr2	21118968	21149368
TDRD15_chr2_21118968_21149368	0/0	c0012	5805	1	1	0	0	0	0	copy fasta	TDRD15	chr2	21118968	21149368
TDRD15_chr2_21118968_21149368	0/0	c0013	5805	1	0	1	0	0	0	copy fasta	TDRD15	chr2	21118968	21149368
TDRD15_chr2_21118968_21149368	0/0	c0014	5805	1	0	1	0	0	0	copy fasta	TDRD15	chr2	21118968	21149368
TDRD15_chr2_21118968_21149368	0/0	c0015	5805	1	1	0	0	0	0	copy fasta	TDRD15	chr2	21118968	21149368
TDRD15_chr2_21118968_21149368	0/0	c0016	5805	1	0	1	0	0	0	copy fasta	TDRD15	chr2	21118968	21149368
TDRD15_chr2_21118968_21149368	0/0	c0017	5805	1	0	0	0	0	1	copy fasta	TDRD15	chr2	21118968	21149368
TDRD15_chr2_21118968_21149368	0/0	c0018	5805	1	0	0	0	0	1	copy fasta	TDRD15	chr2	21118968	21149368
TDRD15_chr2_21118968_21149368	0/0	c0019	5805	1	0	0	1	0	0	copy fasta	TDRD15	chr2	21118968	21149368
TDRD15_chr2_21118968_21149368	0/0	c0020	5805	1	1	0	0	0	0	copy fasta	TDRD15	chr2	21118968	21149368
TDRD15_chr2_21118968_21149368	0/0	c0021	5805	1	1	0	0	0	0	copy fasta	TDRD15	chr2	21118968	21149368
TDRD15_chr2_21118968_21149368	0/0	c0022	5805	1	0	0	1	0	0	copy fasta	TDRD15	chr2	21118968	21149368
TDRD15_chr2_21118968_21149368	0/0	c0023	5805	1	1	0	0	0	0	copy fasta	TDRD15	chr2	21118968	21149368
TDRD15_chr2_21118968_21149368	0/0	c0024	5805	1	1	0	0	0	0	copy fasta	TDRD15	chr2	21118968	21149368
TDRD1_chr10_114174353_114237666	1/1	c0001	3543	274	72	52	109	12	27	copy fasta	TDRD1	chr10	114174353	114237666
TDRD1_chr10_114174353_114237666	0/0	c0002	3543	7	0	0	7	0	0	copy fasta	TDRD1	chr10	114174353	114237666
TDRD1_chr10_114174353_114237666	0/0	c0003	3543	6	6	0	0	0	0	copy fasta	TDRD1	chr10	114174353	114237666
TDRD1_chr10_114174353_114237666	0/0	c0004	3543	3	3	0	0	0	0	copy fasta	TDRD1	chr10	114174353	114237666
TDRD1_chr10_114174353_114237666	0/0	c0005	3543	2	0	0	2	0	0	copy fasta	TDRD1	chr10	114174353	114237666
TDRD1_chr10_114174353_114237666	0/0	c0006	3543	2	1	1	0	0	0	copy fasta	TDRD1	chr10	114174353	114237666
TDRD1_chr10_114174353_114237666	0/0	c0007	3543	1	1	0	0	0	0	copy fasta	TDRD1	chr10	114174353	114237666
TDRD1_chr10_114174353_114237666	0/0	c0008	3543	1	1	0	0	0	0	copy fasta	TDRD1	chr10	114174353	114237666
TDRD1_chr10_114174353_114237666	0/0	c0009	3543	1	0	1	0	0	0	copy fasta	TDRD1	chr10	114174353	114237666
TDRD1_chr10_114174353_114237666	0/0	c0010	3543	1	1	0	0	0	0	copy fasta	TDRD1	chr10	114174353	114237666
TDRD1_chr10_114174353_114237666	0/0	c0011	3543	1	0	0	0	0	1	copy fasta	TDRD1	chr10	114174353	114237666
TDRD1_chr10_114174353_114237666	0/0	c0012	3543	1	0	0	1	0	0	copy fasta	TDRD1	chr10	114174353	114237666
TDRD1_chr10_114174353_114237666	0/0	c0013	3543	1	0	0	1	0	0	copy fasta	TDRD1	chr10	114174353	114237666
TDRD1_chr10_114174353_114237666	0/0	c0014	3543	1	0	1	0	0	0	copy fasta	TDRD1	chr10	114174353	114237666
TDRD1_chr10_114174353_114237666	0/0	c0015	3543	1	1	0	0	0	0	copy fasta	TDRD1	chr10	114174353	114237666
TDRD1_chr10_114174353_114237666	0/0	c0016	3543	1	0	1	0	0	0	copy fasta	TDRD1	chr10	114174353	114237666
TDRD3_chr13_60392220_60578871	1/1	c0001	2235	236	66	56	69	14	29	copy fasta	TDRD3	chr13	60392220	60578871
TDRD3_chr13_60392220_60578871	0/0	c0002	2232	22	3	3	1	2	13	copy fasta	TDRD3	chr13	60392220	60578871
TDRD3_chr13_60392220_60578871	0/0	c0003	2235	7	0	0	7	0	0	copy fasta	TDRD3	chr13	60392220	60578871
TDRD3_chr13_60392220_60578871	0/0	c0004	2235	2	2	0	0	0	0	copy fasta	TDRD3	chr13	60392220	60578871
TDRD3_chr13_60392220_60578871	0/0	c0005	2235	1	1	0	0	0	0	copy fasta	TDRD3	chr13	60392220	60578871
TDRD3_chr13_60392220_60578871	0/0	c0006	2235	1	0	0	1	0	0	copy fasta	TDRD3	chr13	60392220	60578871
TDRD3_chr13_60392220_60578871	0/0	c0007	2235	1	0	1	0	0	0	copy fasta	TDRD3	chr13	60392220	60578871
TDRD3_chr13_60392220_60578871	0/0	c0008	2235	1	0	0	1	0	0	copy fasta	TDRD3	chr13	60392220	60578871
TDRD3_chr13_60392220_60578871	0/0	c0009	2235	1	0	0	1	0	0	copy fasta	TDRD3	chr13	60392220	60578871
TDRD5_chr1_179586832_179696272	0/0	c0001	3108	135	32	28	56	6	13	copy fasta	TDRD5	chr1	179586832	179696272
TDRD5_chr1_179586832_179696272	0/0	c0002	3108	109	5	32	55	4	13	copy fasta	TDRD5	chr1	179586832	179696272
TDRD5_chr1_179586832_179696272	0/0	c0003	3108	33	14	1	17	0	1	copy fasta	TDRD5	chr1	179586832	179696272
TDRD5_chr1_179586832_179696272	0/1	c0004	3108	29	0	6	16	2	4	copy fasta	TDRD5	chr1	179586832	179696272
TDRD5_chr1_179586832_179696272	0/0	c0005	3108	16	15	1	0	0	0	copy fasta	TDRD5	chr1	179586832	179696272
TDRD5_chr1_179586832_179696272	0/0	c0006	3108	13	0	0	13	0	0	copy fasta	TDRD5	chr1	179586832	179696272
TDRD5_chr1_179586832_179696272	0/0	c0007	3108	9	1	1	7	0	0	copy fasta	TDRD5	chr1	179586832	179696272
TDRD5_chr1_179586832_179696272	1/0	c0008	3108	5	3	1	0	0	0	copy fasta	TDRD5	chr1	179586832	179696272
TDRD5_chr1_179586832_179696272	0/0	c0009	3108	5	5	0	0	0	0	copy fasta	TDRD5	chr1	179586832	179696272
TDRD5_chr1_179586832_179696272	0/0	c0010	3108	4	3	1	0	0	0	copy fasta	TDRD5	chr1	179586832	179696272