JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TEX261_chr2_70980942_70999873	0/0	c0006	591	1	0	0	1	0	0	copy fasta	TEX261	chr2	70980942	70999873
TEX261_chr2_70980942_70999873	0/0	c0007	591	1	0	0	1	0	0	copy fasta	TEX261	chr2	70980942	70999873
TEX261_chr2_70980942_70999873	0/0	c0008	287	1	0	0	1	0	0	copy fasta	TEX261	chr2	70980942	70999873
TEX264_chr3_51666252_51709323	1/1	c0001	942	209	51	43	76	11	26	copy fasta	TEX264	chr3	51666252	51709323
TEX264_chr3_51666252_51709323	0/0	c0002	942	77	7	17	50	1	2	copy fasta	TEX264	chr3	51666252	51709323
TEX264_chr3_51666252_51709323	0/0	c0003	942	14	12	2	0	0	0	copy fasta	TEX264	chr3	51666252	51709323
TEX26_chr13_30927656_30980500	1/1	c0001	870	322	84	52	146	11	27	copy fasta	TEX26	chr13	30927656	30980500
TEX26_chr13_30927656_30980500	0/0	c0002	870	83	8	22	32	5	16	copy fasta	TEX26	chr13	30927656	30980500
TEX26_chr13_30927656_30980500	0/0	c0003	870	2	2	0	0	0	0	copy fasta	TEX26	chr13	30927656	30980500
TEX26_chr13_30927656_30980500	0/0	c0004	374	1	0	0	1	0	0	copy fasta	TEX26	chr13	30927656	30980500
TEX26_chr13_30927656_30980500	0/0	c0005	870	1	0	0	0	0	1	copy fasta	TEX26	chr13	30927656	30980500
TEX26_chr13_30927656_30980500	0/0	c0006	870	1	0	0	0	0	1	copy fasta	TEX26	chr13	30927656	30980500
TEX26_chr13_30927656_30980500	0/0	c0007	870	1	0	0	1	0	0	copy fasta	TEX26	chr13	30927656	30980500
TEX26_chr13_30927656_30980500	0/0	c0008	870	1	0	0	1	0	0	copy fasta	TEX26	chr13	30927656	30980500
TEX26_chr13_30927656_30980500	0/0	c0009	870	1	0	0	1	0	0	copy fasta	TEX26	chr13	30927656	30980500
TEX26_chr13_30927656_30980500	0/0	c0010	870	1	0	0	0	0	1	copy fasta	TEX26	chr13	30927656	30980500
TEX28_chrX_154266265_154300124	1/1	c0001	1233	13	1	1	7	0	2	copy fasta	TEX28	chrX	154266265	154300124
TEX28_chrX_154266265_154300124	0/0	c0002	1231	1	1	0	0	0	0	copy fasta	TEX28	chrX	154266265	154300124
TEX28_chrX_154266265_154300124	0/0	c0003	1231	1	0	0	1	0	0	copy fasta	TEX28	chrX	154266265	154300124
TEX29_chr13_111315642_111349248	0/0	c0001	456	219	21	41	118	9	30	copy fasta	TEX29	chr13	111315642	111349248
TEX29_chr13_111315642_111349248	1/1	c0002	456	164	63	30	52	7	10	copy fasta	TEX29	chr13	111315642	111349248
TEX29_chr13_111315642_111349248	0/0	c0003	456	21	0	6	13	0	2	copy fasta	TEX29	chr13	111315642	111349248
TEX29_chr13_111315642_111349248	0/0	c0004	456	4	3	0	0	0	1	copy fasta	TEX29	chr13	111315642	111349248
TEX29_chr13_111315642_111349248	0/0	c0005	456	3	2	1	0	0	0	copy fasta	TEX29	chr13	111315642	111349248
TEX29_chr13_111315642_111349248	0/0	c0006	456	1	0	0	1	0	0	copy fasta	TEX29	chr13	111315642	111349248
TEX29_chr13_111315642_111349248	0/0	c0007	456	1	1	0	0	0	0	copy fasta	TEX29	chr13	111315642	111349248
TEX29_chr13_111315642_111349248	0/0	c0008	456	1	1	0	0	0	0	copy fasta	TEX29	chr13	111315642	111349248
TEX29_chr13_111315642_111349248	0/0	c0009	456	1	0	0	0	0	1	copy fasta	TEX29	chr13	111315642	111349248
TEX29_chr13_111315642_111349248	0/0	c0010	456	1	1	0	0	0	0	copy fasta	TEX29	chr13	111315642	111349248
TEX2_chr17_64142227_64268260	1/1	c0001	3384	164	43	18	72	9	20	copy fasta	TEX2	chr17	64142227	64268260
TEX2_chr17_64142227_64268260	0/0	c0002	3384	19	6	2	6	0	5	copy fasta	TEX2	chr17	64142227	64268260
TEX2_chr17_64142227_64268260	0/0	c0003	3384	17	16	1	0	0	0	copy fasta	TEX2	chr17	64142227	64268260
TEX2_chr17_64142227_64268260	0/0	c0004	3384	9	2	1	1	1	4	copy fasta	TEX2	chr17	64142227	64268260
TEX2_chr17_64142227_64268260	0/0	c0005	3384	6	6	0	0	0	0	copy fasta	TEX2	chr17	64142227	64268260
TEX2_chr17_64142227_64268260	0/0	c0006	3384	1	0	0	0	0	1	copy fasta	TEX2	chr17	64142227	64268260
TEX2_chr17_64142227_64268260	0/0	c0007	3384	1	1	0	0	0	0	copy fasta	TEX2	chr17	64142227	64268260
TEX2_chr17_64142227_64268260	0/0	c0008	3384	1	0	0	1	0	0	copy fasta	TEX2	chr17	64142227	64268260
TEX2_chr17_64142227_64268260	0/0	c0009	3384	1	1	0	0	0	0	copy fasta	TEX2	chr17	64142227	64268260
TEX2_chr17_64142227_64268260	0/0	c0010	3384	1	1	0	0	0	0	copy fasta	TEX2	chr17	64142227	64268260
TEX2_chr17_64142227_64268260	0/0	c0011	3384	1	1	0	0	0	0	copy fasta	TEX2	chr17	64142227	64268260
TEX2_chr17_64142227_64268260	0/0	c0012	3384	1	1	0	0	0	0	copy fasta	TEX2	chr17	64142227	64268260
TEX2_chr17_64142227_64268260	0/0	c0013	3384	1	0	0	1	0	0	copy fasta	TEX2	chr17	64142227	64268260
TEX2_chr17_64142227_64268260	0/0	c0014	3384	1	0	0	1	0	0	copy fasta	TEX2	chr17	64142227	64268260
TEX30_chr13_102760888_102778786	1/1	c0001	684	448	90	85	215	14	42	copy fasta	TEX30	chr13	102760888	102778786
TEX30_chr13_102760888_102778786	0/0	c0002	684	3	2	1	0	0	0	copy fasta	TEX30	chr13	102760888	102778786
TEX30_chr13_102760888_102778786	0/0	c0003	684	1	1	0	0	0	0	copy fasta	TEX30	chr13	102760888	102778786
TEX30_chr13_102760888_102778786	0/0	c0004	684	1	1	0	0	0	0	copy fasta	TEX30	chr13	102760888	102778786
TEX30_chr13_102760888_102778786	0/0	c0005	684	1	0	0	1	0	0	copy fasta	TEX30	chr13	102760888	102778786
TEX33_chr22_36986125_37012851	1/1	c0001	843	211	67	40	62	14	26	copy fasta	TEX33	chr22	36986125	37012851
TEX33_chr22_36986125_37012851	0/0	c0002	843	142	10	13	104	4	11	copy fasta	TEX33	chr22	36986125	37012851