JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TGIF1_chr18_3445172_3464978	0/0	c0004	819	20	18	1	1	0	0	copy fasta	TGIF1	chr18	3445172	3464978
TGIF1_chr18_3445172_3464978	0/0	c0005	819	6	6	0	0	0	0	copy fasta	TGIF1	chr18	3445172	3464978
TGIF1_chr18_3445172_3464978	0/0	c0006	819	3	1	1	0	1	0	copy fasta	TGIF1	chr18	3445172	3464978
TGIF1_chr18_3445172_3464978	0/0	c0007	819	1	1	0	0	0	0	copy fasta	TGIF1	chr18	3445172	3464978
TGIF1_chr18_3445172_3464978	0/0	c0008	819	1	1	0	0	0	0	copy fasta	TGIF1	chr18	3445172	3464978
TGIF1_chr18_3445172_3464978	0/0	c0009	819	1	1	0	0	0	0	copy fasta	TGIF1	chr18	3445172	3464978
TGIF2LX_chrX_89916908_89927883	0/1	c0001	726	234	73	39	104	6	11	copy fasta	TGIF2LX	chrX	89916908	89927883
TGIF2LX_chrX_89916908_89927883	1/0	c0002	726	72	2	13	37	4	15	copy fasta	TGIF2LX	chrX	89916908	89927883
TGIF2LX_chrX_89916908_89927883	0/0	c0003	726	10	1	4	0	3	2	copy fasta	TGIF2LX	chrX	89916908	89927883
TGIF2LX_chrX_89916908_89927883	0/0	c0004	726	4	0	0	4	0	0	copy fasta	TGIF2LX	chrX	89916908	89927883
TGIF2LX_chrX_89916908_89927883	0/0	c0005	726	2	0	0	2	0	0	copy fasta	TGIF2LX	chrX	89916908	89927883
TGIF2LX_chrX_89916908_89927883	0/0	c0006	726	1	0	0	0	0	1	copy fasta	TGIF2LX	chrX	89916908	89927883
TGIF2LY_chrY_3574067_3585041	1/1	c0001	558	129	16	20	70	5	16	copy fasta	TGIF2LY	chrY	3574067	3585041
TGIF2LY_chrY_3574067_3585041	0/0	c0002	558	1	1	0	0	0	0	copy fasta	TGIF2LY	chrY	3574067	3585041
TGIF2LY_chrY_3574067_3585041	0/0	c0003	559	1	0	0	1	0	0	copy fasta	TGIF2LY	chrY	3574067	3585041
TGIF2_chr20_36568597_36598950	1/1	c0001	714	362	96	74	142	18	30	copy fasta	TGIF2	chr20	36568597	36598950
TGM1_chr14_24244114_24268177	1/0	c0001	2454	279	42	50	143	9	34	copy fasta	TGM1	chr14	24244114	24268177
TGM1_chr14_24244114_24268177	0/1	c0002	2454	74	17	19	21	5	11	copy fasta	TGM1	chr14	24244114	24268177
TGM1_chr14_24244114_24268177	0/0	c0003	2454	24	9	0	13	0	2	copy fasta	TGM1	chr14	24244114	24268177
TGM1_chr14_24244114_24268177	0/0	c0004	2454	6	6	0	0	0	0	copy fasta	TGM1	chr14	24244114	24268177
TGM1_chr14_24244114_24268177	0/0	c0005	2454	3	3	0	0	0	0	copy fasta	TGM1	chr14	24244114	24268177
TGM1_chr14_24244114_24268177	0/0	c0006	2454	3	0	0	3	0	0	copy fasta	TGM1	chr14	24244114	24268177
TGM1_chr14_24244114_24268177	0/0	c0007	2454	3	0	0	3	0	0	copy fasta	TGM1	chr14	24244114	24268177
TGM1_chr14_24244114_24268177	0/0	c0008	2454	2	0	0	2	0	0	copy fasta	TGM1	chr14	24244114	24268177
TGM1_chr14_24244114_24268177	0/0	c0009	2454	2	2	0	0	0	0	copy fasta	TGM1	chr14	24244114	24268177
TGM1_chr14_24244114_24268177	0/0	c0010	2454	1	1	0	0	0	0	copy fasta	TGM1	chr14	24244114	24268177
TGM1_chr14_24244114_24268177	0/0	c0011	2454	1	1	0	0	0	0	copy fasta	TGM1	chr14	24244114	24268177
TGM1_chr14_24244114_24268177	0/0	c0012	2454	1	0	0	0	1	0	copy fasta	TGM1	chr14	24244114	24268177
TGM1_chr14_24244114_24268177	0/0	c0013	2454	1	1	0	0	0	0	copy fasta	TGM1	chr14	24244114	24268177
TGM1_chr14_24244114_24268177	0/0	c0014	2454	1	1	0	0	0	0	copy fasta	TGM1	chr14	24244114	24268177
TGM1_chr14_24244114_24268177	0/0	c0015	2454	1	0	0	0	1	0	copy fasta	TGM1	chr14	24244114	24268177
TGM1_chr14_24244114_24268177	0/0	c0016	2454	1	0	0	1	0	0	copy fasta	TGM1	chr14	24244114	24268177
TGM1_chr14_24244114_24268177	0/0	c0017	2453	1	0	0	1	0	0	copy fasta	TGM1	chr14	24244114	24268177
TGM1_chr14_24244114_24268177	0/0	c0018	2454	1	1	0	0	0	0	copy fasta	TGM1	chr14	24244114	24268177
TGM1_chr14_24244114_24268177	0/0	c0019	2454	1	1	0	0	0	0	copy fasta	TGM1	chr14	24244114	24268177
TGM1_chr14_24244114_24268177	0/0	c0020	2454	1	0	0	1	0	0	copy fasta	TGM1	chr14	24244114	24268177
TGM1_chr14_24244114_24268177	0/0	c0021	2454	1	1	0	0	0	0	copy fasta	TGM1	chr14	24244114	24268177
TGM1_chr14_24244114_24268177	0/0	c0022	2454	1	0	1	0	0	0	copy fasta	TGM1	chr14	24244114	24268177
TGM1_chr14_24244114_24268177	0/0	c0023	2454	1	0	0	0	0	1	copy fasta	TGM1	chr14	24244114	24268177
TGM1_chr14_24244114_24268177	0/0	c0024	2454	1	1	0	0	0	0	copy fasta	TGM1	chr14	24244114	24268177
TGM1_chr14_24244114_24268177	0/0	c0025	2454	1	1	0	0	0	0	copy fasta	TGM1	chr14	24244114	24268177
TGM1_chr14_24244114_24268177	0/0	c0026	2454	1	0	0	1	0	0	copy fasta	TGM1	chr14	24244114	24268177
TGM1_chr14_24244114_24268177	0/0	c0027	2454	1	1	0	0	0	0	copy fasta	TGM1	chr14	24244114	24268177
TGM1_chr14_24244114_24268177	0/0	c0028	2454	1	1	0	0	0	0	copy fasta	TGM1	chr14	24244114	24268177
TGM1_chr14_24244114_24268177	0/0	c0029	2454	1	0	0	1	0	0	copy fasta	TGM1	chr14	24244114	24268177
TGM1_chr14_24244114_24268177	0/0	c0030	2454	1	0	0	1	0	0	copy fasta	TGM1	chr14	24244114	24268177
TGM1_chr14_24244114_24268177	0/0	c0031	2454	1	1	0	0	0	0	copy fasta	TGM1	chr14	24244114	24268177
TGM1_chr14_24244114_24268177	0/0	c0032	2454	1	1	0	0	0	0	copy fasta	TGM1	chr14	24244114	24268177
TGM1_chr14_24244114_24268177	0/0	c0033	2454	1	0	0	1	0	0	copy fasta	TGM1	chr14	24244114	24268177
TGM2_chr20_38122385_38170270	1/1	c0001	2064	201	47	45	68	13	26	copy fasta	TGM2	chr20	38122385	38170270