JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
THUMPD3_chr3_9358054_9391791	0/0	c0013	1524	1	1	0	0	0	0	copy fasta	THUMPD3	chr3	9358054	9391791
THUMPD3_chr3_9358054_9391791	0/0	c0014	1524	1	0	1	0	0	0	copy fasta	THUMPD3	chr3	9358054	9391791
THY1_chr11_119410476_119428172	1/1	c0001	486	380	91	72	158	18	39	copy fasta	THY1	chr11	119410476	119428172
THY1_chr11_119410476_119428172	0/0	c0002	486	2	0	0	2	0	0	copy fasta	THY1	chr11	119410476	119428172
THY1_chr11_119410476_119428172	0/0	c0003	486	1	0	0	0	0	1	copy fasta	THY1	chr11	119410476	119428172
THY1_chr11_119410476_119428172	0/0	c0004	486	1	1	0	0	0	0	copy fasta	THY1	chr11	119410476	119428172
THYN1_chr11_134243282_134258352	0/0	c0001	678	455	95	84	214	18	44	copy fasta	THYN1	chr11	134243282	134258352
THYN1_chr11_134243282_134258352	0/0	c0002	678	1	1	0	0	0	0	copy fasta	THYN1	chr11	134243282	134258352
THYN1_chr11_134243282_134258352	0/0	c0003	678	1	1	0	0	0	0	copy fasta	THYN1	chr11	134243282	134258352
THYN1_chr11_134243282_134258352	0/0	c0004	678	1	1	0	0	0	0	copy fasta	THYN1	chr11	134243282	134258352
TH_chr11_2158929_2176815	0/0	c0001	1494	187	10	31	112	6	28	copy fasta	TH	chr11	2158929	2176815
TH_chr11_2158929_2176815	1/0	c0002	1494	128	44	30	39	7	7	copy fasta	TH	chr11	2158929	2176815
TH_chr11_2158929_2176815	0/1	c0003	1494	36	9	10	6	5	5	copy fasta	TH	chr11	2158929	2176815
TH_chr11_2158929_2176815	0/0	c0004	1494	8	8	0	0	0	0	copy fasta	TH	chr11	2158929	2176815
TH_chr11_2158929_2176815	0/0	c0005	1494	7	5	2	0	0	0	copy fasta	TH	chr11	2158929	2176815
TH_chr11_2158929_2176815	0/0	c0006	1494	3	0	1	0	0	2	copy fasta	TH	chr11	2158929	2176815
TH_chr11_2158929_2176815	0/0	c0007	1494	3	3	0	0	0	0	copy fasta	TH	chr11	2158929	2176815
TH_chr11_2158929_2176815	0/0	c0008	1494	3	3	0	0	0	0	copy fasta	TH	chr11	2158929	2176815
TH_chr11_2158929_2176815	0/0	c0009	1494	2	2	0	0	0	0	copy fasta	TH	chr11	2158929	2176815
TH_chr11_2158929_2176815	0/0	c0010	1494	2	0	1	1	0	0	copy fasta	TH	chr11	2158929	2176815
TH_chr11_2158929_2176815	0/0	c0011	1494	2	2	0	0	0	0	copy fasta	TH	chr11	2158929	2176815
TH_chr11_2158929_2176815	0/0	c0012	1494	1	1	0	0	0	0	copy fasta	TH	chr11	2158929	2176815
TH_chr11_2158929_2176815	0/0	c0013	1494	1	0	0	0	0	1	copy fasta	TH	chr11	2158929	2176815
TH_chr11_2158929_2176815	0/0	c0014	1494	1	0	1	0	0	0	copy fasta	TH	chr11	2158929	2176815
TH_chr11_2158929_2176815	0/0	c0015	1494	1	0	1	0	0	0	copy fasta	TH	chr11	2158929	2176815
TH_chr11_2158929_2176815	0/0	c0016	1494	1	0	1	0	0	0	copy fasta	TH	chr11	2158929	2176815
TH_chr11_2158929_2176815	0/0	c0017	1494	1	0	0	0	0	1	copy fasta	TH	chr11	2158929	2176815
TH_chr11_2158929_2176815	0/0	c0018	1494	1	1	0	0	0	0	copy fasta	TH	chr11	2158929	2176815
TIA1_chr2_70204444_70253628	1/1	c0001	1161	379	87	66	175	10	39	copy fasta	TIA1	chr2	70204444	70253628
TIA1_chr2_70204444_70253628	0/0	c0002	1161	4	4	0	0	0	0	copy fasta	TIA1	chr2	70204444	70253628
TIA1_chr2_70204444_70253628	0/0	c0003	1161	3	3	0	0	0	0	copy fasta	TIA1	chr2	70204444	70253628
TIA1_chr2_70204444_70253628	0/0	c0004	1161	3	2	1	0	0	0	copy fasta	TIA1	chr2	70204444	70253628
TIA1_chr2_70204444_70253628	0/0	c0005	1161	2	2	0	0	0	0	copy fasta	TIA1	chr2	70204444	70253628
TIA1_chr2_70204444_70253628	0/0	c0006	1161	1	0	1	0	0	0	copy fasta	TIA1	chr2	70204444	70253628
TIA1_chr2_70204444_70253628	0/0	c0007	1161	1	0	0	0	0	1	copy fasta	TIA1	chr2	70204444	70253628
TIA1_chr2_70204444_70253628	0/0	c0008	1161	1	0	0	1	0	0	copy fasta	TIA1	chr2	70204444	70253628
TIAL1_chr10_119568465_119601964	1/1	c0001	1128	380	85	53	185	12	43	copy fasta	TIAL1	chr10	119568465	119601964
TIAL1_chr10_119568465_119601964	0/0	c0002	1128	11	5	6	0	0	0	copy fasta	TIAL1	chr10	119568465	119601964
TIAL1_chr10_119568465_119601964	0/0	c0003	1128	4	4	0	0	0	0	copy fasta	TIAL1	chr10	119568465	119601964
TIAL1_chr10_119568465_119601964	0/0	c0004	1128	1	0	1	0	0	0	copy fasta	TIAL1	chr10	119568465	119601964
TIAL1_chr10_119568465_119601964	0/0	c0005	1128	1	0	0	1	0	0	copy fasta	TIAL1	chr10	119568465	119601964
TIAL1_chr10_119568465_119601964	0/0	c0006	1128	1	0	0	0	0	1	copy fasta	TIAL1	chr10	119568465	119601964
TIAM1_chr21_31113418_31349261	0/0	c0001	4776	80	28	16	23	2	11	copy fasta	TIAM1	chr21	31113418	31349261
TIAM1_chr21_31113418_31349261	1/0	c0002	4776	55	24	13	6	2	9	copy fasta	TIAM1	chr21	31113418	31349261
TIAM1_chr21_31113418_31349261	0/0	c0003	4776	20	1	5	12	0	2	copy fasta	TIAM1	chr21	31113418	31349261
TIAM1_chr21_31113418_31349261	0/0	c0004	4776	12	0	0	4	0	8	copy fasta	TIAM1	chr21	31113418	31349261
TIAM1_chr21_31113418_31349261	0/0	c0005	4776	11	8	1	2	0	0	copy fasta	TIAM1	chr21	31113418	31349261
TIAM1_chr21_31113418_31349261	0/0	c0006	4776	5	5	0	0	0	0	copy fasta	TIAM1	chr21	31113418	31349261
TIAM1_chr21_31113418_31349261	0/0	c0007	4776	4	3	1	0	0	0	copy fasta	TIAM1	chr21	31113418	31349261
TIAM1_chr21_31113418_31349261	0/0	c0008	4776	3	3	0	0	0	0	copy fasta	TIAM1	chr21	31113418	31349261