JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TLR8_chrX_12901620_12928169	0/0	c0024	3126	1	0	0	0	0	1	copy fasta	TLR8	chrX	12901620	12928169
TLR9_chr3_52216080_52230645	1/1	c0001	3099	174	49	39	61	6	17	copy fasta	TLR9	chr3	52216080	52230645
TLR9_chr3_52216080_52230645	0/0	c0002	3099	150	17	33	77	10	13	copy fasta	TLR9	chr3	52216080	52230645
TLR9_chr3_52216080_52230645	0/0	c0003	3099	10	10	0	0	0	0	copy fasta	TLR9	chr3	52216080	52230645
TLR9_chr3_52216080_52230645	0/0	c0004	3099	7	7	0	0	0	0	copy fasta	TLR9	chr3	52216080	52230645
TLR9_chr3_52216080_52230645	0/0	c0005	3099	3	0	0	1	0	2	copy fasta	TLR9	chr3	52216080	52230645
TLR9_chr3_52216080_52230645	0/0	c0006	3099	3	0	0	0	0	3	copy fasta	TLR9	chr3	52216080	52230645
TLR9_chr3_52216080_52230645	0/0	c0007	3099	2	2	0	0	0	0	copy fasta	TLR9	chr3	52216080	52230645
TLR9_chr3_52216080_52230645	0/0	c0008	3099	2	0	0	2	0	0	copy fasta	TLR9	chr3	52216080	52230645
TLR9_chr3_52216080_52230645	0/0	c0009	3099	2	2	0	0	0	0	copy fasta	TLR9	chr3	52216080	52230645
TLR9_chr3_52216080_52230645	0/0	c0010	3099	2	0	2	0	0	0	copy fasta	TLR9	chr3	52216080	52230645
TLR9_chr3_52216080_52230645	0/0	c0011	3099	1	1	0	0	0	0	copy fasta	TLR9	chr3	52216080	52230645
TLR9_chr3_52216080_52230645	0/0	c0012	3099	1	0	0	1	0	0	copy fasta	TLR9	chr3	52216080	52230645
TLR9_chr3_52216080_52230645	0/0	c0013	3099	1	1	0	0	0	0	copy fasta	TLR9	chr3	52216080	52230645
TLR9_chr3_52216080_52230645	0/0	c0014	3099	1	1	0	0	0	0	copy fasta	TLR9	chr3	52216080	52230645
TLR9_chr3_52216080_52230645	0/0	c0015	3099	1	0	1	0	0	0	copy fasta	TLR9	chr3	52216080	52230645
TLR9_chr3_52216080_52230645	0/0	c0016	3099	1	0	1	0	0	0	copy fasta	TLR9	chr3	52216080	52230645
TLR9_chr3_52216080_52230645	0/0	c0017	3099	1	0	0	0	0	1	copy fasta	TLR9	chr3	52216080	52230645
TLR9_chr3_52216080_52230645	0/0	c0018	3099	1	0	0	0	0	1	copy fasta	TLR9	chr3	52216080	52230645
TLR9_chr3_52216080_52230645	0/0	c0019	3099	1	1	0	0	0	0	copy fasta	TLR9	chr3	52216080	52230645
TLR9_chr3_52216080_52230645	0/0	c0020	3099	1	0	0	1	0	0	copy fasta	TLR9	chr3	52216080	52230645
TLR9_chr3_52216080_52230645	0/0	c0021	3099	1	0	0	1	0	0	copy fasta	TLR9	chr3	52216080	52230645
TLR9_chr3_52216080_52230645	0/0	c0022	3099	1	0	0	1	0	0	copy fasta	TLR9	chr3	52216080	52230645
TLR9_chr3_52216080_52230645	0/0	c0023	3099	1	1	0	0	0	0	copy fasta	TLR9	chr3	52216080	52230645
TLR9_chr3_52216080_52230645	0/0	c0024	3099	1	1	0	0	0	0	copy fasta	TLR9	chr3	52216080	52230645
TLR9_chr3_52216080_52230645	0/0	c0025	3099	1	1	0	0	0	0	copy fasta	TLR9	chr3	52216080	52230645
TLR9_chr3_52216080_52230645	0/0	c0026	3099	1	0	0	0	0	1	copy fasta	TLR9	chr3	52216080	52230645
TLR9_chr3_52216080_52230645	0/0	c0027	3099	1	0	0	1	0	0	copy fasta	TLR9	chr3	52216080	52230645
TLX1_chr10_101126300_101142789	1/1	c0001	993	460	94	86	212	18	48	copy fasta	TLX1	chr10	101126300	101142789
TLX1_chr10_101126300_101142789	0/0	c0002	993	2	0	2	0	0	0	copy fasta	TLX1	chr10	101126300	101142789
TLX1_chr10_101126300_101142789	0/0	c0003	993	1	0	0	1	0	0	copy fasta	TLX1	chr10	101126300	101142789
TLX1_chr10_101126300_101142789	0/0	c0004	993	1	0	0	1	0	0	copy fasta	TLX1	chr10	101126300	101142789
TLX1_chr10_101126300_101142789	0/0	c0005	993	1	0	0	1	0	0	copy fasta	TLX1	chr10	101126300	101142789
TLX1_chr10_101126300_101142789	0/0	c0006	993	1	0	0	1	0	0	copy fasta	TLX1	chr10	101126300	101142789
TLX1_chr10_101126300_101142789	0/0	c0007	993	1	0	0	1	0	0	copy fasta	TLX1	chr10	101126300	101142789
TLX1_chr10_101126300_101142789	0/0	c0008	993	1	0	0	1	0	0	copy fasta	TLX1	chr10	101126300	101142789
TLX2_chr2_74509450_74522148	1/1	c0001	855	362	91	71	156	10	32	copy fasta	TLX2	chr2	74509450	74522148
TLX2_chr2_74509450_74522148	0/0	c0002	855	5	5	0	0	0	0	copy fasta	TLX2	chr2	74509450	74522148
TLX2_chr2_74509450_74522148	0/0	c0003	855	2	0	0	2	0	0	copy fasta	TLX2	chr2	74509450	74522148
TLX2_chr2_74509450_74522148	0/0	c0004	855	1	0	1	0	0	0	copy fasta	TLX2	chr2	74509450	74522148
TLX2_chr2_74509450_74522148	0/0	c0005	855	1	0	0	1	0	0	copy fasta	TLX2	chr2	74509450	74522148
TLX2_chr2_74509450_74522148	0/0	c0006	855	1	0	0	1	0	0	copy fasta	TLX2	chr2	74509450	74522148
TLX3_chr5_171304248_171317139	1/1	c0001	876	378	79	78	162	16	41	copy fasta	TLX3	chr5	171304248	171317139
TLX3_chr5_171304248_171317139	0/0	c0002	876	6	0	0	6	0	0	copy fasta	TLX3	chr5	171304248	171317139
TLX3_chr5_171304248_171317139	0/0	c0003	876	6	6	0	0	0	0	copy fasta	TLX3	chr5	171304248	171317139
TLX3_chr5_171304248_171317139	0/0	c0004	876	3	3	0	0	0	0	copy fasta	TLX3	chr5	171304248	171317139
TLX3_chr5_171304248_171317139	0/0	c0005	876	3	2	1	0	0	0	copy fasta	TLX3	chr5	171304248	171317139
TLX3_chr5_171304248_171317139	0/0	c0006	876	2	2	0	0	0	0	copy fasta	TLX3	chr5	171304248	171317139
TLX3_chr5_171304248_171317139	0/0	c0007	876	2	0	0	2	0	0	copy fasta	TLX3	chr5	171304248	171317139
TLX3_chr5_171304248_171317139	0/0	c0008	876	1	0	0	0	0	1	copy fasta	TLX3	chr5	171304248	171317139