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geneid	54106
ensemblid	ENSG00000239732.4
hgncid	15633
symbol	TLR9
name	toll like receptor 9
refseq_nuc	NM_017442.4
refseq_prot	NP_059138.1
ensembl_nuc	ENST00000360658.3
ensembl_prot	ENSP00000353874.2
mane_status	MANE Select
chr	chr3
start	52221080
end	52225645
strand	-
ver	v1.2
region	chr3:52221080-52225645
region5000	chr3:52216080-52230645
regionname0	TLR9_chr3_52221080_52225645
regionname5000	TLR9_chr3_52216080_52230645

ahapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	alen	total	AFR	AMR	EAS	EUR	SAS	JPT	regionname	genename	aa	chr	start	end
a0001	1/1	1032	341	74	76	140	16	33	108	TLR9_chr3_52216080_52230645	TLR9	copy fasta	chr3	52216080	52230645
a0002	0/0	1032	10	10	0	0	0	0	0	TLR9_chr3_52216080_52230645	TLR9	copy fasta	chr3	52216080	52230645
a0003	0/0	1032	10	7	0	1	0	2	1	TLR9_chr3_52216080_52230645	TLR9	copy fasta	chr3	52216080	52230645
a0004	0/0	1032	3	0	0	0	0	3	0	TLR9_chr3_52216080_52230645	TLR9	copy fasta	chr3	52216080	52230645
a0005	0/0	1032	2	0	0	2	0	0	2	TLR9_chr3_52216080_52230645	TLR9	copy fasta	chr3	52216080	52230645
a0006	0/0	1032	1	0	0	1	0	0	0	TLR9_chr3_52216080_52230645	TLR9	copy fasta	chr3	52216080	52230645
a0007	0/0	1032	1	1	0	0	0	0	0	TLR9_chr3_52216080_52230645	TLR9	copy fasta	chr3	52216080	52230645
a0008	0/0	1032	1	0	0	1	0	0	0	TLR9_chr3_52216080_52230645	TLR9	copy fasta	chr3	52216080	52230645
a0009	0/0	1032	1	1	0	0	0	0	0	TLR9_chr3_52216080_52230645	TLR9	copy fasta	chr3	52216080	52230645
a0010	0/0	1032	1	0	0	1	0	0	1	TLR9_chr3_52216080_52230645	TLR9	copy fasta	chr3	52216080	52230645
a0011	0/0	1032	1	1	0	0	0	0	0	TLR9_chr3_52216080_52230645	TLR9	copy fasta	chr3	52216080	52230645

chapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	clen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	cseq	chr	start	end
c0001	1/1	3099	174	49	39	61	6	17	TLR9_chr3_52216080_52230645	TLR9	copy fasta	chr3	52216080	52230645
c0002	0/0	3099	150	17	33	77	10	13	TLR9_chr3_52216080_52230645	TLR9	copy fasta	chr3	52216080	52230645
c0003	0/0	3099	10	10	0	0	0	0	TLR9_chr3_52216080_52230645	TLR9	copy fasta	chr3	52216080	52230645
c0004	0/0	3099	7	7	0	0	0	0	TLR9_chr3_52216080_52230645	TLR9	copy fasta	chr3	52216080	52230645
c0005	0/0	3099	3	0	0	1	0	2	TLR9_chr3_52216080_52230645	TLR9	copy fasta	chr3	52216080	52230645
c0006	0/0	3099	3	0	0	0	0	3	TLR9_chr3_52216080_52230645	TLR9	copy fasta	chr3	52216080	52230645
c0007	0/0	3099	2	2	0	0	0	0	TLR9_chr3_52216080_52230645	TLR9	copy fasta	chr3	52216080	52230645
c0008	0/0	3099	2	0	0	2	0	0	TLR9_chr3_52216080_52230645	TLR9	copy fasta	chr3	52216080	52230645
c0009	0/0	3099	2	2	0	0	0	0	TLR9_chr3_52216080_52230645	TLR9	copy fasta	chr3	52216080	52230645
c0010	0/0	3099	2	0	2	0	0	0	TLR9_chr3_52216080_52230645	TLR9	copy fasta	chr3	52216080	52230645
c0011	0/0	3099	1	1	0	0	0	0	TLR9_chr3_52216080_52230645	TLR9	copy fasta	chr3	52216080	52230645
c0012	0/0	3099	1	0	0	1	0	0	TLR9_chr3_52216080_52230645	TLR9	copy fasta	chr3	52216080	52230645
c0013	0/0	3099	1	1	0	0	0	0	TLR9_chr3_52216080_52230645	TLR9	copy fasta	chr3	52216080	52230645
c0014	0/0	3099	1	1	0	0	0	0	TLR9_chr3_52216080_52230645	TLR9	copy fasta	chr3	52216080	52230645
c0015	0/0	3099	1	0	1	0	0	0	TLR9_chr3_52216080_52230645	TLR9	copy fasta	chr3	52216080	52230645
c0016	0/0	3099	1	0	1	0	0	0	TLR9_chr3_52216080_52230645	TLR9	copy fasta	chr3	52216080	52230645
c0017	0/0	3099	1	0	0	0	0	1	TLR9_chr3_52216080_52230645	TLR9	copy fasta	chr3	52216080	52230645
c0018	0/0	3099	1	0	0	0	0	1	TLR9_chr3_52216080_52230645	TLR9	copy fasta	chr3	52216080	52230645
c0019	0/0	3099	1	1	0	0	0	0	TLR9_chr3_52216080_52230645	TLR9	copy fasta	chr3	52216080	52230645
c0020	0/0	3099	1	0	0	1	0	0	TLR9_chr3_52216080_52230645	TLR9	copy fasta	chr3	52216080	52230645
c0021	0/0	3099	1	0	0	1	0	0	TLR9_chr3_52216080_52230645	TLR9	copy fasta	chr3	52216080	52230645
c0022	0/0	3099	1	0	0	1	0	0	TLR9_chr3_52216080_52230645	TLR9	copy fasta	chr3	52216080	52230645
c0023	0/0	3099	1	1	0	0	0	0	TLR9_chr3_52216080_52230645	TLR9	copy fasta	chr3	52216080	52230645
c0024	0/0	3099	1	1	0	0	0	0	TLR9_chr3_52216080_52230645	TLR9	copy fasta	chr3	52216080	52230645
c0025	0/0	3099	1	1	0	0	0	0	TLR9_chr3_52216080_52230645	TLR9	copy fasta	chr3	52216080	52230645
c0026	0/0	3099	1	0	0	0	0	1	TLR9_chr3_52216080_52230645	TLR9	copy fasta	chr3	52216080	52230645
c0027	0/0	3099	1	0	0	1	0	0	TLR9_chr3_52216080_52230645	TLR9	copy fasta	chr3	52216080	52230645

thapid	grch38 chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	tlen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	tseq	chr	start	end
t0001	1/1	254	371	94	75	146	16	38	TLR9_chr3_52216080_52230645	TLR9	copy fasta	chr3	52216080	52230645
t0002	0/0	254	1	0	1	0	0	0	TLR9_chr3_52216080_52230645	TLR9	copy fasta	chr3	52216080	52230645

ghapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	chr	start	end
g0001	1/1	146	26	37	59	6	16	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
g0002	0/0	120	9	30	64	6	11	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
g0003	0/0	22	20	2	0	0	0	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
g0004	0/0	13	7	1	2	2	1	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
g0005	0/0	9	9	0	0	0	0	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
g0006	0/0	8	0	0	8	0	0	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
g0007	0/0	7	7	0	0	0	0	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
g0008	0/0	3	0	0	0	0	3	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
g0009	0/0	3	0	0	1	0	2	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
g0010	0/0	3	3	0	0	0	0	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
g0011	0/0	2	2	0	0	0	0	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
g0012	0/0	2	0	0	0	2	0	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
g0013	0/0	2	0	0	2	0	0	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
g0014	0/0	2	2	0	0	0	0	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
g0015	0/0	2	0	2	0	0	0	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
g0016	0/0	1	1	0	0	0	0	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
g0017	0/0	1	0	0	1	0	0	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
g0018	0/0	1	0	0	1	0	0	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
g0019	0/0	1	1	0	0	0	0	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
g0020	0/0	1	0	0	0	0	1	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
g0021	0/0	1	0	0	0	0	1	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
g0022	0/0	1	0	0	0	0	1	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
g0023	0/0	1	0	0	1	0	0	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
g0024	0/0	1	0	0	1	0	0	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
g0025	0/0	1	0	0	1	0	0	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
g0026	0/0	1	1	0	0	0	0	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
g0027	0/0	1	0	0	1	0	0	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
g0028	0/0	1	1	0	0	0	0	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
g0029	0/0	1	1	0	0	0	0	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
g0030	0/0	1	0	1	0	0	0	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
g0031	0/0	1	0	1	0	0	0	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
g0032	0/0	1	0	1	0	0	0	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
g0033	0/0	1	1	0	0	0	0	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
g0034	0/0	1	1	0	0	0	0	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
g0035	0/0	1	1	0	0	0	0	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
g0036	0/0	1	1	0	0	0	0	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
g0037	0/0	1	0	0	0	0	1	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
g0038	0/0	1	0	0	1	0	0	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
g0039	0/0	1	0	1	0	0	0	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
g0040	0/0	1	0	0	1	0	0	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
g0041	0/0	1	0	0	0	0	1	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
g0042	0/0	1	0	0	1	0	0	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
g0043	0/0	1	0	0	1	0	0	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645

achapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	clen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	cseq	chr	start	end
a0001c0001	1/1	3099	174	49	39	61	6	17	TLR9_chr3_52216080_52230645	TLR9	copy fasta	chr3	52216080	52230645
a0001c0002	0/0	3099	150	17	33	77	10	13	TLR9_chr3_52216080_52230645	TLR9	copy fasta	chr3	52216080	52230645
a0001c0007	0/0	3099	2	2	0	0	0	0	TLR9_chr3_52216080_52230645	TLR9	copy fasta	chr3	52216080	52230645
a0001c0009	0/0	3099	2	2	0	0	0	0	TLR9_chr3_52216080_52230645	TLR9	copy fasta	chr3	52216080	52230645
a0001c0010	0/0	3099	2	0	2	0	0	0	TLR9_chr3_52216080_52230645	TLR9	copy fasta	chr3	52216080	52230645
a0001c0011	0/0	3099	1	1	0	0	0	0	TLR9_chr3_52216080_52230645	TLR9	copy fasta	chr3	52216080	52230645
a0001c0014	0/0	3099	1	1	0	0	0	0	TLR9_chr3_52216080_52230645	TLR9	copy fasta	chr3	52216080	52230645
a0001c0015	0/0	3099	1	0	1	0	0	0	TLR9_chr3_52216080_52230645	TLR9	copy fasta	chr3	52216080	52230645
a0001c0016	0/0	3099	1	0	1	0	0	0	TLR9_chr3_52216080_52230645	TLR9	copy fasta	chr3	52216080	52230645
a0001c0017	0/0	3099	1	0	0	0	0	1	TLR9_chr3_52216080_52230645	TLR9	copy fasta	chr3	52216080	52230645
a0001c0018	0/0	3099	1	0	0	0	0	1	TLR9_chr3_52216080_52230645	TLR9	copy fasta	chr3	52216080	52230645
a0001c0020	0/0	3099	1	0	0	1	0	0	TLR9_chr3_52216080_52230645	TLR9	copy fasta	chr3	52216080	52230645
a0001c0022	0/0	3099	1	0	0	1	0	0	TLR9_chr3_52216080_52230645	TLR9	copy fasta	chr3	52216080	52230645
a0001c0023	0/0	3099	1	1	0	0	0	0	TLR9_chr3_52216080_52230645	TLR9	copy fasta	chr3	52216080	52230645
a0001c0024	0/0	3099	1	1	0	0	0	0	TLR9_chr3_52216080_52230645	TLR9	copy fasta	chr3	52216080	52230645
a0001c0026	0/0	3099	1	0	0	0	0	1	TLR9_chr3_52216080_52230645	TLR9	copy fasta	chr3	52216080	52230645
a0002c0003	0/0	3099	10	10	0	0	0	0	TLR9_chr3_52216080_52230645	TLR9	copy fasta	chr3	52216080	52230645
a0003c0004	0/0	3099	7	7	0	0	0	0	TLR9_chr3_52216080_52230645	TLR9	copy fasta	chr3	52216080	52230645
a0003c0005	0/0	3099	3	0	0	1	0	2	TLR9_chr3_52216080_52230645	TLR9	copy fasta	chr3	52216080	52230645
a0004c0006	0/0	3099	3	0	0	0	0	3	TLR9_chr3_52216080_52230645	TLR9	copy fasta	chr3	52216080	52230645
a0005c0008	0/0	3099	2	0	0	2	0	0	TLR9_chr3_52216080_52230645	TLR9	copy fasta	chr3	52216080	52230645
a0006c0027	0/0	3099	1	0	0	1	0	0	TLR9_chr3_52216080_52230645	TLR9	copy fasta	chr3	52216080	52230645
a0007c0019	0/0	3099	1	1	0	0	0	0	TLR9_chr3_52216080_52230645	TLR9	copy fasta	chr3	52216080	52230645
a0008c0021	0/0	3099	1	0	0	1	0	0	TLR9_chr3_52216080_52230645	TLR9	copy fasta	chr3	52216080	52230645
a0009c0013	0/0	3099	1	1	0	0	0	0	TLR9_chr3_52216080_52230645	TLR9	copy fasta	chr3	52216080	52230645
a0010c0012	0/0	3099	1	0	0	1	0	0	TLR9_chr3_52216080_52230645	TLR9	copy fasta	chr3	52216080	52230645
a0011c0025	0/0	3099	1	1	0	0	0	0	TLR9_chr3_52216080_52230645	TLR9	copy fasta	chr3	52216080	52230645

acthapid	grch38 chm13v2	tlen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	tseq	chr	start	end
a0001c0001t0001	1/1	3352	174	49	39	61	6	17	TLR9_chr3_52216080_52230645	TLR9	copy fasta	chr3	52216080	52230645
a0001c0002t0001	0/0	3352	149	17	32	77	10	13	TLR9_chr3_52216080_52230645	TLR9	copy fasta	chr3	52216080	52230645
a0001c0002t0002	0/0	3352	1	0	1	0	0	0	TLR9_chr3_52216080_52230645	TLR9	copy fasta	chr3	52216080	52230645
a0001c0007t0001	0/0	3352	2	2	0	0	0	0	TLR9_chr3_52216080_52230645	TLR9	copy fasta	chr3	52216080	52230645
a0001c0009t0001	0/0	3352	2	2	0	0	0	0	TLR9_chr3_52216080_52230645	TLR9	copy fasta	chr3	52216080	52230645
a0001c0010t0001	0/0	3352	2	0	2	0	0	0	TLR9_chr3_52216080_52230645	TLR9	copy fasta	chr3	52216080	52230645
a0001c0011t0001	0/0	3352	1	1	0	0	0	0	TLR9_chr3_52216080_52230645	TLR9	copy fasta	chr3	52216080	52230645
a0001c0014t0001	0/0	3352	1	1	0	0	0	0	TLR9_chr3_52216080_52230645	TLR9	copy fasta	chr3	52216080	52230645
a0001c0015t0001	0/0	3352	1	0	1	0	0	0	TLR9_chr3_52216080_52230645	TLR9	copy fasta	chr3	52216080	52230645
a0001c0016t0001	0/0	3352	1	0	1	0	0	0	TLR9_chr3_52216080_52230645	TLR9	copy fasta	chr3	52216080	52230645
a0001c0017t0001	0/0	3352	1	0	0	0	0	1	TLR9_chr3_52216080_52230645	TLR9	copy fasta	chr3	52216080	52230645
a0001c0018t0001	0/0	3352	1	0	0	0	0	1	TLR9_chr3_52216080_52230645	TLR9	copy fasta	chr3	52216080	52230645
a0001c0020t0001	0/0	3352	1	0	0	1	0	0	TLR9_chr3_52216080_52230645	TLR9	copy fasta	chr3	52216080	52230645
a0001c0022t0001	0/0	3352	1	0	0	1	0	0	TLR9_chr3_52216080_52230645	TLR9	copy fasta	chr3	52216080	52230645
a0001c0023t0001	0/0	3352	1	1	0	0	0	0	TLR9_chr3_52216080_52230645	TLR9	copy fasta	chr3	52216080	52230645
a0001c0024t0001	0/0	3352	1	1	0	0	0	0	TLR9_chr3_52216080_52230645	TLR9	copy fasta	chr3	52216080	52230645
a0001c0026t0001	0/0	3352	1	0	0	0	0	1	TLR9_chr3_52216080_52230645	TLR9	copy fasta	chr3	52216080	52230645
a0002c0003t0001	0/0	3352	10	10	0	0	0	0	TLR9_chr3_52216080_52230645	TLR9	copy fasta	chr3	52216080	52230645
a0003c0004t0001	0/0	3352	7	7	0	0	0	0	TLR9_chr3_52216080_52230645	TLR9	copy fasta	chr3	52216080	52230645
a0003c0005t0001	0/0	3352	3	0	0	1	0	2	TLR9_chr3_52216080_52230645	TLR9	copy fasta	chr3	52216080	52230645
a0004c0006t0001	0/0	3352	3	0	0	0	0	3	TLR9_chr3_52216080_52230645	TLR9	copy fasta	chr3	52216080	52230645
a0005c0008t0001	0/0	3352	2	0	0	2	0	0	TLR9_chr3_52216080_52230645	TLR9	copy fasta	chr3	52216080	52230645
a0006c0027t0001	0/0	3352	1	0	0	1	0	0	TLR9_chr3_52216080_52230645	TLR9	copy fasta	chr3	52216080	52230645
a0007c0019t0001	0/0	3352	1	1	0	0	0	0	TLR9_chr3_52216080_52230645	TLR9	copy fasta	chr3	52216080	52230645
a0008c0021t0001	0/0	3352	1	0	0	1	0	0	TLR9_chr3_52216080_52230645	TLR9	copy fasta	chr3	52216080	52230645
a0009c0013t0001	0/0	3352	1	1	0	0	0	0	TLR9_chr3_52216080_52230645	TLR9	copy fasta	chr3	52216080	52230645
a0010c0012t0001	0/0	3352	1	0	0	1	0	0	TLR9_chr3_52216080_52230645	TLR9	copy fasta	chr3	52216080	52230645
a0011c0025t0001	0/0	3352	1	1	0	0	0	0	TLR9_chr3_52216080_52230645	TLR9	copy fasta	chr3	52216080	52230645

actghapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	chr	start	end
a0001c0001t0001g0001	1/1	146	26	37	59	6	16	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
a0001c0001t0001g0003	0/0	22	20	2	0	0	0	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
a0001c0001t0001g0010	0/0	3	3	0	0	0	0	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
a0001c0001t0001g0041	0/0	1	0	0	0	0	1	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
a0001c0001t0001g0042	0/0	1	0	0	1	0	0	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
a0001c0001t0001g0043	0/0	1	0	0	1	0	0	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
a0001c0002t0001g0002	0/0	120	9	30	64	6	11	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
a0001c0002t0001g0004	0/0	13	7	1	2	2	1	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
a0001c0002t0001g0006	0/0	8	0	0	8	0	0	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
a0001c0002t0001g0012	0/0	2	0	0	0	2	0	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
a0001c0002t0001g0016	0/0	1	1	0	0	0	0	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
a0001c0002t0001g0017	0/0	1	0	0	1	0	0	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
a0001c0002t0001g0018	0/0	1	0	0	1	0	0	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
a0001c0002t0001g0020	0/0	1	0	0	0	0	1	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
a0001c0002t0001g0039	0/0	1	0	1	0	0	0	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
a0001c0002t0001g0040	0/0	1	0	0	1	0	0	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
a0001c0002t0002g0030	0/0	1	0	1	0	0	0	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
a0001c0007t0001g0014	0/0	2	2	0	0	0	0	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
a0001c0009t0001g0011	0/0	2	2	0	0	0	0	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
a0001c0010t0001g0015	0/0	2	0	2	0	0	0	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
a0001c0011t0001g0026	0/0	1	1	0	0	0	0	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
a0001c0014t0001g0029	0/0	1	1	0	0	0	0	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
a0001c0015t0001g0031	0/0	1	0	1	0	0	0	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
a0001c0016t0001g0032	0/0	1	0	1	0	0	0	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
a0001c0017t0001g0021	0/0	1	0	0	0	0	1	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
a0001c0018t0001g0022	0/0	1	0	0	0	0	1	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
a0001c0020t0001g0023	0/0	1	0	0	1	0	0	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
a0001c0022t0001g0025	0/0	1	0	0	1	0	0	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
a0001c0023t0001g0034	0/0	1	1	0	0	0	0	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
a0001c0024t0001g0035	0/0	1	1	0	0	0	0	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
a0001c0026t0001g0037	0/0	1	0	0	0	0	1	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
a0002c0003t0001g0005	0/0	9	9	0	0	0	0	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
a0002c0003t0001g0019	0/0	1	1	0	0	0	0	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
a0003c0004t0001g0007	0/0	7	7	0	0	0	0	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
a0003c0005t0001g0009	0/0	3	0	0	1	0	2	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
a0004c0006t0001g0008	0/0	3	0	0	0	0	3	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
a0005c0008t0001g0013	0/0	2	0	0	2	0	0	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
a0006c0027t0001g0038	0/0	1	0	0	1	0	0	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
a0007c0019t0001g0033	0/0	1	1	0	0	0	0	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
a0008c0021t0001g0024	0/0	1	0	0	1	0	0	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
a0009c0013t0001g0028	0/0	1	1	0	0	0	0	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
a0010c0012t0001g0027	0/0	1	0	0	1	0	0	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
a0011c0025t0001g0036	0/0	1	1	0	0	0	0	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645

sampleid	ID haplotypeid	ahapid	chapid	thapid	ghapid	gpopname	popname	regionname	genename	chr	start	end
HG00140	hp1	a0001	c0001	t0001	g0001	EUR	GBR	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
HG00140	hp2	a0001	c0001	t0001	g0001	EUR	GBR	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
HG00280	hp1	a0001	c0002	t0001	g0002	EUR	FIN	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
HG00280	hp2	a0001	c0002	t0001	g0002	EUR	FIN	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
HG00323	hp1	a0001	c0001	t0001	g0001	EUR	FIN	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
HG00323	hp2	a0001	c0002	t0001	g0002	EUR	FIN	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
HG00438	hp1	a0001	c0001	t0001	g0001	EAS	CHS	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
HG00438	hp2	a0001	c0002	t0001	g0002	EAS	CHS	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
HG00544	hp1	a0001	c0002	t0001	g0002	EAS	CHS	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
HG00544	hp2	a0008	c0021	t0001	g0024	EAS	CHS	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
HG00558	hp1	a0001	c0002	t0001	g0002	EAS	CHS	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
HG00558	hp2	a0001	c0001	t0001	g0001	EAS	CHS	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
HG00597	hp1	a0001	c0002	t0001	g0002	EAS	CHS	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
HG00597	hp2	a0001	c0001	t0001	g0001	EAS	CHS	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
HG00609	hp1	a0001	c0002	t0001	g0002	EAS	CHS	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
HG00609	hp2	a0006	c0027	t0001	g0038	EAS	CHS	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
HG00621	hp1	a0001	c0002	t0001	g0002	EAS	CHS	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
HG00621	hp2	a0001	c0001	t0001	g0001	EAS	CHS	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
HG00642	hp1	a0001	c0001	t0001	g0001	AMR	PUR	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
HG00642	hp2	a0001	c0002	t0001	g0002	AMR	PUR	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
HG00673	hp1	a0001	c0001	t0001	g0001	EAS	CHS	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
HG00673	hp2	a0001	c0002	t0001	g0002	EAS	CHS	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
HG00733	hp1	a0001	c0002	t0001	g0002	AMR	PUR	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
HG00733	hp2	a0001	c0016	t0001	g0032	AMR	PUR	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
HG00735	hp1	a0001	c0015	t0001	g0031	AMR	PUR	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
HG00735	hp2	a0001	c0001	t0001	g0001	AMR	PUR	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
HG00738	hp1	a0001	c0002	t0001	g0002	AMR	PUR	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
HG00738	hp2	a0001	c0001	t0001	g0001	AMR	PUR	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
HG00741	hp1	a0001	c0001	t0001	g0001	AMR	PUR	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
HG00741	hp2	a0001	c0002	t0001	g0002	AMR	PUR	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
HG01069	hp1	a0001	c0002	t0001	g0002	AMR	PUR	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
HG01069	hp2	a0001	c0001	t0001	g0001	AMR	PUR	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
HG01070	hp1	a0001	c0001	t0001	g0001	AMR	PUR	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
HG01070	hp2	a0001	c0002	t0001	g0002	AMR	PUR	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
HG01071	hp1	a0001	c0001	t0001	g0001	AMR	PUR	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
HG01071	hp2	a0001	c0002	t0001	g0002	AMR	PUR	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
HG01074	hp1	a0001	c0002	t0001	g0004	AMR	PUR	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
HG01074	hp2	a0001	c0001	t0001	g0001	AMR	PUR	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
HG01081	hp1	a0001	c0010	t0001	g0015	AMR	PUR	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
HG01081	hp2	a0001	c0002	t0001	g0002	AMR	PUR	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
HG01106	hp1	a0001	c0001	t0001	g0001	AMR	PUR	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
HG01106	hp2	a0001	c0002	t0001	g0002	AMR	PUR	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
HG01109	hp1	a0001	c0001	t0001	g0001	AMR	PUR	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
HG01109	hp2	a0001	c0001	t0001	g0001	AMR	PUR	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
HG01169	hp1	a0001	c0002	t0001	g0002	AMR	PUR	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
HG01169	hp2	a0001	c0001	t0001	g0001	AMR	PUR	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
HG01175	hp1	a0001	c0001	t0001	g0001	AMR	PUR	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
HG01175	hp2	a0001	c0001	t0001	g0001	AMR	PUR	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
HG01192	hp1	a0001	c0002	t0001	g0002	AMR	PUR	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
HG01192	hp2	a0001	c0010	t0001	g0015	AMR	PUR	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
HG01243	hp1	a0001	c0001	t0001	g0003	AMR	PUR	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
HG01243	hp2	a0001	c0001	t0001	g0001	AMR	PUR	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
HG01255	hp1	a0001	c0002	t0002	g0030	AMR	CLM	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
HG01255	hp2	a0001	c0001	t0001	g0001	AMR	CLM	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
HG01257	hp1	a0001	c0001	t0001	g0001	AMR	CLM	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
HG01257	hp2	a0001	c0002	t0001	g0002	AMR	CLM	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
HG01258	hp1	a0001	c0002	t0001	g0002	AMR	CLM	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
HG01258	hp2	a0001	c0001	t0001	g0001	AMR	CLM	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
HG01261	hp1	a0001	c0001	t0001	g0001	AMR	CLM	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
HG01261	hp2	a0001	c0002	t0001	g0002	AMR	CLM	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
HG01346	hp1	a0001	c0001	t0001	g0001	AMR	CLM	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
HG01346	hp2	a0001	c0001	t0001	g0001	AMR	CLM	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
HG01358	hp1	a0001	c0002	t0001	g0002	AMR	CLM	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
HG01358	hp2	a0001	c0001	t0001	g0001	AMR	CLM	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
HG01361	hp1	a0001	c0002	t0001	g0002	AMR	CLM	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
HG01361	hp2	a0001	c0002	t0001	g0002	AMR	CLM	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
HG01433	hp1	a0001	c0002	t0001	g0002	AMR	CLM	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
HG01433	hp2	a0001	c0001	t0001	g0001	AMR	CLM	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
HG01496	hp1	a0001	c0001	t0001	g0001	AMR	CLM	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
HG01496	hp2	a0001	c0002	t0001	g0002	AMR	CLM	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
HG01515	hp1	a0001	c0002	t0001	g0012	EUR	IBS	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
HG01515	hp2	a0001	c0002	t0001	g0002	EUR	IBS	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
HG01516	hp1	a0001	c0002	t0001	g0004	EUR	IBS	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
HG01516	hp2	a0001	c0001	t0001	g0001	EUR	IBS	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
HG01517	hp1	a0001	c0002	t0001	g0004	EUR	IBS	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
HG01517	hp2	a0001	c0002	t0001	g0012	EUR	IBS	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
HG01884	hp1	a0001	c0001	t0001	g0001	AFR	ACB	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
HG01884	hp2	a0001	c0001	t0001	g0003	AFR	ACB	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
HG01891	hp1	a0001	c0002	t0001	g0004	AFR	ACB	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
HG01891	hp2	a0001	c0002	t0001	g0002	AFR	ACB	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
HG01928	hp1	a0001	c0001	t0001	g0001	AMR	PEL	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
HG01928	hp2	a0001	c0001	t0001	g0001	AMR	PEL	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
HG01934	hp1	a0001	c0001	t0001	g0001	AMR	PEL	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
HG01934	hp2	a0001	c0001	t0001	g0003	AMR	PEL	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
HG01943	hp1	a0001	c0001	t0001	g0001	AMR	PEL	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
HG01943	hp2	a0001	c0002	t0001	g0002	AMR	PEL	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
HG01975	hp1	a0001	c0001	t0001	g0001	AMR	PEL	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
HG01975	hp2	a0001	c0002	t0001	g0039	AMR	PEL	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
HG01978	hp1	a0001	c0001	t0001	g0001	AMR	PEL	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
HG01978	hp2	a0001	c0002	t0001	g0002	AMR	PEL	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
HG01981	hp1	a0001	c0002	t0001	g0002	AMR	PEL	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
HG01981	hp2	a0001	c0001	t0001	g0001	AMR	PEL	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
HG01993	hp1	a0001	c0001	t0001	g0001	AMR	PEL	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
HG01993	hp2	a0001	c0002	t0001	g0002	AMR	PEL	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
HG02004	hp1	a0001	c0001	t0001	g0001	AMR	PEL	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
HG02004	hp2	a0001	c0001	t0001	g0001	AMR	PEL	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
HG02015	hp1	a0001	c0001	t0001	g0043	EAS	KHV	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
HG02015	hp2	a0001	c0002	t0001	g0002	EAS	KHV	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
HG02027	hp1	a0001	c0001	t0001	g0001	EAS	KHV	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
HG02027	hp2	a0001	c0001	t0001	g0001	EAS	KHV	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
HG02040	hp1	a0001	c0002	t0001	g0002	EAS	KHV	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
HG02040	hp2	a0001	c0002	t0001	g0002	EAS	KHV	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
HG02080	hp1	a0001	c0001	t0001	g0001	EAS	KHV	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
HG02080	hp2	a0001	c0001	t0001	g0001	EAS	KHV	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
HG02083	hp1	a0001	c0001	t0001	g0001	EAS	KHV	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
HG02083	hp2	a0001	c0002	t0001	g0002	EAS	KHV	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
HG02129	hp1	a0001	c0001	t0001	g0001	EAS	KHV	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
HG02129	hp2	a0001	c0002	t0001	g0002	EAS	KHV	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
HG02132	hp1	a0001	c0002	t0001	g0002	EAS	KHV	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
HG02132	hp2	a0001	c0001	t0001	g0001	EAS	KHV	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
HG02145	hp1	a0001	c0001	t0001	g0001	AFR	ACB	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
HG02145	hp2	a0001	c0001	t0001	g0001	AFR	ACB	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
HG02148	hp1	a0001	c0002	t0001	g0002	AMR	PEL	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
HG02148	hp2	a0001	c0001	t0001	g0001	AMR	PEL	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
HG02165	hp1	a0001	c0001	t0001	g0001	EAS	CDX	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
HG02165	hp2	a0001	c0001	t0001	g0001	EAS	CDX	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
HG02257	hp1	a0001	c0009	t0001	g0011	AFR	ACB	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
HG02257	hp2	a0001	c0002	t0001	g0002	AFR	ACB	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
HG02258	hp1	a0001	c0002	t0001	g0002	AFR	ACB	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
HG02258	hp2	a0001	c0001	t0001	g0001	AFR	ACB	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
HG02273	hp1	a0001	c0002	t0001	g0002	AMR	PEL	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
HG02273	hp2	a0001	c0002	t0001	g0002	AMR	PEL	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
HG02280	hp1	a0001	c0014	t0001	g0029	AFR	ACB	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
HG02280	hp2	a0001	c0001	t0001	g0003	AFR	ACB	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
HG02293	hp1	a0001	c0001	t0001	g0001	AMR	PEL	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
HG02293	hp2	a0001	c0001	t0001	g0001	AMR	PEL	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
HG02300	hp1	a0001	c0002	t0001	g0002	AMR	PEL	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
HG02300	hp2	a0001	c0002	t0001	g0002	AMR	PEL	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
HG02451	hp1	a0002	c0003	t0001	g0005	AFR	ACB	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
HG02451	hp2	a0001	c0001	t0001	g0003	AFR	ACB	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
HG02523	hp1	a0001	c0001	t0001	g0001	EAS	KHV	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
HG02523	hp2	a0001	c0002	t0001	g0002	EAS	KHV	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
HG02572	hp1	a0001	c0002	t0001	g0004	AFR	GWD	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
HG02572	hp2	a0001	c0001	t0001	g0001	AFR	GWD	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
HG02622	hp1	a0001	c0001	t0001	g0010	AFR	GWD	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
HG02622	hp2	a0003	c0004	t0001	g0007	AFR	GWD	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
HG02630	hp1	a0002	c0003	t0001	g0005	AFR	GWD	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
HG02630	hp2	a0001	c0001	t0001	g0003	AFR	GWD	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
HG02647	hp1	a0001	c0001	t0001	g0003	AFR	GWD	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
HG02647	hp2	a0001	c0011	t0001	g0026	AFR	GWD	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
HG02683	hp1	a0001	c0002	t0001	g0004	SAS	PJL	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
HG02683	hp2	a0001	c0001	t0001	g0001	SAS	PJL	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
HG02698	hp1	a0001	c0017	t0001	g0021	SAS	PJL	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
HG02698	hp2	a0001	c0001	t0001	g0001	SAS	PJL	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
HG02717	hp1	a0001	c0024	t0001	g0035	AFR	GWD	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
HG02717	hp2	a0002	c0003	t0001	g0005	AFR	GWD	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
HG02723	hp1	a0001	c0002	t0001	g0004	AFR	GWD	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
HG02723	hp2	a0001	c0001	t0001	g0001	AFR	GWD	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
HG02738	hp1	a0001	c0001	t0001	g0001	SAS	PJL	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
HG02738	hp2	a0001	c0001	t0001	g0041	SAS	PJL	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
HG02809	hp1	a0001	c0001	t0001	g0003	AFR	GWD	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
HG02809	hp2	a0001	c0001	t0001	g0010	AFR	GWD	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
HG02818	hp1	a0001	c0001	t0001	g0001	AFR	GWD	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
HG02818	hp2	a0001	c0002	t0001	g0002	AFR	GWD	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
HG02886	hp1	a0001	c0001	t0001	g0001	AFR	GWD	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
HG02886	hp2	a0002	c0003	t0001	g0019	AFR	GWD	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
HG02896	hp1	a0001	c0002	t0001	g0002	AFR	GWD	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
HG02896	hp2	a0001	c0001	t0001	g0003	AFR	GWD	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
HG02897	hp1	a0001	c0002	t0001	g0002	AFR	GWD	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
HG02897	hp2	a0001	c0001	t0001	g0003	AFR	GWD	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
HG02922	hp1	a0002	c0003	t0001	g0005	AFR	ESN	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
HG02922	hp2	a0001	c0001	t0001	g0003	AFR	ESN	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
HG02965	hp1	a0001	c0001	t0001	g0001	AFR	ESN	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
HG02965	hp2	a0002	c0003	t0001	g0005	AFR	ESN	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
HG02970	hp1	a0001	c0001	t0001	g0001	AFR	ESN	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
HG02970	hp2	a0003	c0004	t0001	g0007	AFR	ESN	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
HG02976	hp1	a0001	c0001	t0001	g0001	AFR	ESN	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
HG02976	hp2	a0001	c0001	t0001	g0001	AFR	ESN	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
HG03017	hp1	a0001	c0001	t0001	g0001	SAS	PJL	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
HG03017	hp2	a0001	c0002	t0001	g0002	SAS	PJL	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
HG03041	hp1	a0009	c0013	t0001	g0028	AFR	GWD	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
HG03041	hp2	a0002	c0003	t0001	g0005	AFR	GWD	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
HG03098	hp1	a0003	c0004	t0001	g0007	AFR	MSL	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
HG03098	hp2	a0001	c0001	t0001	g0001	AFR	MSL	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
HG03130	hp1	a0002	c0003	t0001	g0005	AFR	ESN	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
HG03130	hp2	a0001	c0001	t0001	g0003	AFR	ESN	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
HG03139	hp1	a0002	c0003	t0001	g0005	AFR	ESN	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
HG03139	hp2	a0001	c0001	t0001	g0001	AFR	ESN	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
HG03195	hp1	a0001	c0002	t0001	g0004	AFR	ESN	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
HG03195	hp2	a0001	c0002	t0001	g0004	AFR	ESN	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
HG03209	hp1	a0001	c0001	t0001	g0001	AFR	MSL	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
HG03209	hp2	a0003	c0004	t0001	g0007	AFR	MSL	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
HG03225	hp1	a0001	c0001	t0001	g0001	AFR	MSL	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
HG03225	hp2	a0001	c0001	t0001	g0003	AFR	MSL	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
HG03239	hp1	a0001	c0002	t0001	g0002	SAS	PJL	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
HG03239	hp2	a0001	c0001	t0001	g0001	SAS	PJL	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
HG03453	hp1	a0001	c0001	t0001	g0001	AFR	MSL	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
HG03453	hp2	a0001	c0001	t0001	g0001	AFR	MSL	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
HG03486	hp1	a0001	c0001	t0001	g0001	AFR	MSL	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
HG03486	hp2	a0001	c0002	t0001	g0016	AFR	MSL	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
HG03490	hp1	a0001	c0001	t0001	g0001	SAS	PJL	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
HG03490	hp2	a0001	c0002	t0001	g0002	SAS	PJL	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
HG03491	hp1	a0001	c0001	t0001	g0001	SAS	PJL	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
HG03491	hp2	a0001	c0002	t0001	g0002	SAS	PJL	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
HG03492	hp1	a0001	c0002	t0001	g0002	SAS	PJL	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
HG03492	hp2	a0001	c0001	t0001	g0001	SAS	PJL	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
HG03516	hp1	a0001	c0001	t0001	g0003	AFR	ESN	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
HG03516	hp2	a0001	c0001	t0001	g0001	AFR	ESN	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
HG03540	hp1	a0001	c0002	t0001	g0004	AFR	GWD	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
HG03540	hp2	a0001	c0001	t0001	g0001	AFR	GWD	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
HG03579	hp1	a0001	c0001	t0001	g0010	AFR	MSL	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
HG03579	hp2	a0001	c0001	t0001	g0003	AFR	MSL	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
HG03688	hp1	a0001	c0002	t0001	g0002	SAS	STU	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
HG03688	hp2	a0001	c0001	t0001	g0001	SAS	STU	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
HG03704	hp1	a0001	c0026	t0001	g0037	SAS	PJL	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
HG03704	hp2	a0001	c0002	t0001	g0002	SAS	PJL	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
HG03710	hp1	a0001	c0001	t0001	g0001	SAS	PJL	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
HG03710	hp2	a0004	c0006	t0001	g0008	SAS	PJL	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
HG03834	hp1	a0001	c0002	t0001	g0002	SAS	BEB	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
HG03834	hp2	a0003	c0005	t0001	g0009	SAS	BEB	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
HG03942	hp1	a0001	c0001	t0001	g0001	SAS	BEB	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
HG03942	hp2	a0001	c0002	t0001	g0020	SAS	BEB	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
HG04115	hp1	a0001	c0001	t0001	g0001	SAS	STU	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
HG04115	hp2	a0004	c0006	t0001	g0008	SAS	STU	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
HG04184	hp1	a0001	c0002	t0001	g0002	SAS	BEB	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
HG04184	hp2	a0001	c0001	t0001	g0001	SAS	BEB	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
HG04199	hp1	a0001	c0018	t0001	g0022	SAS	STU	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
HG04199	hp2	a0001	c0001	t0001	g0001	SAS	STU	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
HG04204	hp1	a0003	c0005	t0001	g0009	SAS	STU	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
HG04204	hp2	a0004	c0006	t0001	g0008	SAS	STU	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
HG04228	hp1	a0001	c0002	t0001	g0002	SAS	STU	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
HG04228	hp2	a0001	c0001	t0001	g0001	SAS	STU	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
NA18522	hp1	a0001	c0001	t0001	g0001	AFR	YRI	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
NA18522	hp2	a0001	c0002	t0001	g0002	AFR	YRI	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
NA18747	hp1	a0001	c0001	t0001	g0001	EAS	CHB	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
NA18747	hp2	a0001	c0001	t0001	g0001	EAS	CHB	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
NA18906	hp1	a0001	c0001	t0001	g0001	AFR	YRI	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
NA18906	hp2	a0001	c0001	t0001	g0001	AFR	YRI	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
NA18939	hp1	a0001	c0001	t0001	g0001	EAS	JPT	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
NA18939	hp2	a0001	c0002	t0001	g0002	EAS	JPT	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
NA18940	hp1	a0001	c0002	t0001	g0002	EAS	JPT	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
NA18940	hp2	a0001	c0002	t0001	g0002	EAS	JPT	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
NA18941	hp1	a0001	c0002	t0001	g0002	EAS	JPT	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
NA18941	hp2	a0001	c0002	t0001	g0017	EAS	JPT	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
NA18943	hp1	a0001	c0001	t0001	g0001	EAS	JPT	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
NA18943	hp2	a0001	c0002	t0001	g0002	EAS	JPT	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
NA18944	hp1	a0001	c0002	t0001	g0002	EAS	JPT	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
NA18944	hp2	a0001	c0002	t0001	g0002	EAS	JPT	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
NA18949	hp1	a0001	c0002	t0001	g0002	EAS	JPT	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
NA18949	hp2	a0001	c0001	t0001	g0042	EAS	JPT	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
NA18952	hp1	a0001	c0002	t0001	g0002	EAS	JPT	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
NA18952	hp2	a0001	c0001	t0001	g0001	EAS	JPT	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
NA18953	hp1	a0001	c0001	t0001	g0001	EAS	JPT	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
NA18953	hp2	a0001	c0002	t0001	g0002	EAS	JPT	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
NA18956	hp1	a0001	c0002	t0001	g0002	EAS	JPT	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
NA18956	hp2	a0001	c0001	t0001	g0001	EAS	JPT	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
NA18957	hp1	a0001	c0001	t0001	g0001	EAS	JPT	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
NA18957	hp2	a0001	c0002	t0001	g0002	EAS	JPT	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
NA18959	hp1	a0001	c0001	t0001	g0001	EAS	JPT	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
NA18959	hp2	a0001	c0022	t0001	g0025	EAS	JPT	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
NA18961	hp1	a0001	c0002	t0001	g0002	EAS	JPT	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
NA18961	hp2	a0005	c0008	t0001	g0013	EAS	JPT	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
NA18964	hp1	a0001	c0002	t0001	g0002	EAS	JPT	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
NA18964	hp2	a0001	c0001	t0001	g0001	EAS	JPT	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
NA18965	hp1	a0001	c0001	t0001	g0001	EAS	JPT	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
NA18965	hp2	a0001	c0002	t0001	g0002	EAS	JPT	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
NA18966	hp1	a0001	c0001	t0001	g0001	EAS	JPT	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
NA18966	hp2	a0001	c0002	t0001	g0006	EAS	JPT	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
NA18967	hp1	a0001	c0002	t0001	g0002	EAS	JPT	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
NA18967	hp2	a0001	c0001	t0001	g0001	EAS	JPT	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
NA18969	hp1	a0001	c0002	t0001	g0006	EAS	JPT	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
NA18969	hp2	a0001	c0001	t0001	g0001	EAS	JPT	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
NA18970	hp1	a0001	c0001	t0001	g0001	EAS	JPT	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
NA18970	hp2	a0001	c0002	t0001	g0002	EAS	JPT	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
NA18971	hp1	a0001	c0001	t0001	g0001	EAS	JPT	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
NA18971	hp2	a0001	c0002	t0001	g0002	EAS	JPT	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
NA18972	hp1	a0001	c0001	t0001	g0001	EAS	JPT	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
NA18972	hp2	a0001	c0002	t0001	g0002	EAS	JPT	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
NA18973	hp1	a0001	c0002	t0001	g0006	EAS	JPT	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
NA18973	hp2	a0001	c0001	t0001	g0001	EAS	JPT	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
NA18974	hp1	a0001	c0002	t0001	g0002	EAS	JPT	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
NA18974	hp2	a0001	c0002	t0001	g0002	EAS	JPT	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
NA18975	hp1	a0001	c0001	t0001	g0001	EAS	JPT	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
NA18975	hp2	a0001	c0002	t0001	g0006	EAS	JPT	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
NA18979	hp1	a0001	c0001	t0001	g0001	EAS	JPT	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
NA18979	hp2	a0001	c0001	t0001	g0001	EAS	JPT	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
NA18980	hp1	a0001	c0002	t0001	g0002	EAS	JPT	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
NA18980	hp2	a0001	c0001	t0001	g0001	EAS	JPT	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
NA18981	hp1	a0001	c0002	t0001	g0002	EAS	JPT	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
NA18981	hp2	a0001	c0002	t0001	g0002	EAS	JPT	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
NA18982	hp1	a0001	c0002	t0001	g0002	EAS	JPT	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
NA18982	hp2	a0001	c0001	t0001	g0001	EAS	JPT	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
NA18985	hp1	a0001	c0002	t0001	g0018	EAS	JPT	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
NA18985	hp2	a0001	c0002	t0001	g0006	EAS	JPT	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
NA18986	hp1	a0001	c0020	t0001	g0023	EAS	JPT	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
NA18986	hp2	a0001	c0002	t0001	g0002	EAS	JPT	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
NA18987	hp1	a0001	c0002	t0001	g0006	EAS	JPT	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
NA18987	hp2	a0001	c0001	t0001	g0001	EAS	JPT	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
NA18990	hp1	a0001	c0002	t0001	g0004	EAS	JPT	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
NA18990	hp2	a0001	c0001	t0001	g0001	EAS	JPT	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
NA18995	hp1	a0001	c0002	t0001	g0002	EAS	JPT	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
NA18995	hp2	a0001	c0002	t0001	g0002	EAS	JPT	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
NA18998	hp1	a0001	c0001	t0001	g0001	EAS	JPT	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
NA18998	hp2	a0001	c0002	t0001	g0002	EAS	JPT	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
NA19003	hp1	a0001	c0001	t0001	g0001	EAS	JPT	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
NA19003	hp2	a0001	c0002	t0001	g0002	EAS	JPT	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
NA19005	hp1	a0001	c0002	t0001	g0002	EAS	JPT	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
NA19005	hp2	a0001	c0001	t0001	g0001	EAS	JPT	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
NA19007	hp1	a0001	c0001	t0001	g0001	EAS	JPT	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
NA19007	hp2	a0001	c0002	t0001	g0002	EAS	JPT	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
NA19009	hp1	a0001	c0001	t0001	g0001	EAS	JPT	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
NA19009	hp2	a0001	c0002	t0001	g0002	EAS	JPT	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
NA19010	hp1	a0001	c0001	t0001	g0001	EAS	JPT	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
NA19010	hp2	a0001	c0002	t0001	g0002	EAS	JPT	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
NA19011	hp1	a0001	c0002	t0001	g0002	EAS	JPT	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
NA19011	hp2	a0001	c0001	t0001	g0001	EAS	JPT	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
NA19030	hp1	a0003	c0004	t0001	g0007	AFR	LWK	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
NA19030	hp2	a0001	c0001	t0001	g0003	AFR	LWK	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
NA19043	hp1	a0001	c0002	t0001	g0004	AFR	LWK	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
NA19043	hp2	a0001	c0001	t0001	g0003	AFR	LWK	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
NA19055	hp1	a0001	c0002	t0001	g0002	EAS	JPT	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
NA19055	hp2	a0001	c0002	t0001	g0004	EAS	JPT	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
NA19056	hp1	a0001	c0002	t0001	g0002	EAS	JPT	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
NA19056	hp2	a0001	c0001	t0001	g0001	EAS	JPT	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
NA19057	hp1	a0001	c0001	t0001	g0001	EAS	JPT	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
NA19057	hp2	a0001	c0001	t0001	g0001	EAS	JPT	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
NA19058	hp1	a0003	c0005	t0001	g0009	EAS	JPT	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
NA19058	hp2	a0001	c0002	t0001	g0002	EAS	JPT	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
NA19060	hp1	a0001	c0001	t0001	g0001	EAS	JPT	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
NA19060	hp2	a0001	c0002	t0001	g0002	EAS	JPT	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
NA19062	hp1	a0001	c0002	t0001	g0002	EAS	JPT	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
NA19062	hp2	a0001	c0002	t0001	g0006	EAS	JPT	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
NA19063	hp1	a0001	c0002	t0001	g0040	EAS	JPT	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
NA19063	hp2	a0001	c0002	t0001	g0002	EAS	JPT	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
NA19065	hp1	a0001	c0002	t0001	g0002	EAS	JPT	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
NA19065	hp2	a0001	c0001	t0001	g0001	EAS	JPT	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
NA19066	hp1	a0001	c0002	t0001	g0002	EAS	JPT	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
NA19066	hp2	a0001	c0001	t0001	g0001	EAS	JPT	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
NA19068	hp1	a0001	c0002	t0001	g0006	EAS	JPT	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
NA19068	hp2	a0001	c0002	t0001	g0002	EAS	JPT	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
NA19072	hp1	a0001	c0001	t0001	g0001	EAS	JPT	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
NA19072	hp2	a0005	c0008	t0001	g0013	EAS	JPT	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
NA19079	hp1	a0001	c0001	t0001	g0001	EAS	JPT	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
NA19079	hp2	a0001	c0002	t0001	g0002	EAS	JPT	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
NA19083	hp1	a0001	c0001	t0001	g0001	EAS	JPT	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
NA19083	hp2	a0001	c0002	t0001	g0002	EAS	JPT	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
NA19085	hp1	a0001	c0002	t0001	g0002	EAS	JPT	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
NA19085	hp2	a0001	c0001	t0001	g0001	EAS	JPT	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
NA19087	hp1	a0001	c0002	t0001	g0002	EAS	JPT	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
NA19087	hp2	a0001	c0001	t0001	g0001	EAS	JPT	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
NA19088	hp1	a0001	c0002	t0001	g0002	EAS	JPT	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
NA19088	hp2	a0001	c0002	t0001	g0002	EAS	JPT	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
NA19091	hp1	a0010	c0012	t0001	g0027	EAS	JPT	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
NA19091	hp2	a0001	c0001	t0001	g0001	EAS	JPT	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
NA19240	hp1	a0001	c0009	t0001	g0011	AFR	YRI	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
NA19240	hp2	a0001	c0001	t0001	g0001	AFR	YRI	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
NA20129	hp1	a0001	c0001	t0001	g0003	AFR	ASW	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
NA20129	hp2	a0003	c0004	t0001	g0007	AFR	ASW	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
NA20752	hp1	a0001	c0001	t0001	g0001	EUR	TSI	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
NA20752	hp2	a0001	c0002	t0001	g0002	EUR	TSI	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
NA20805	hp1	a0001	c0002	t0001	g0002	EUR	TSI	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
NA20805	hp2	a0001	c0001	t0001	g0001	EUR	TSI	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
NA20905	hp1	a0001	c0001	t0001	g0001	SAS	GIH	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
NA20905	hp2	a0001	c0002	t0001	g0002	SAS	GIH	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
HG01123	hp1	a0001	c0002	t0001	g0002	AMR	CLM	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
HG01123	hp2	a0001	c0002	t0001	g0002	AMR	CLM	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
HG02109	hp1	a0001	c0001	t0001	g0003	AFR	ACB	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
HG02109	hp2	a0001	c0002	t0001	g0002	AFR	ACB	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
HG02486	hp1	a0003	c0004	t0001	g0007	AFR	ACB	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
HG02486	hp2	a0011	c0025	t0001	g0036	AFR	ACB	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
HG02559	hp1	a0001	c0001	t0001	g0003	AFR	ACB	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
HG02559	hp2	a0001	c0001	t0001	g0001	AFR	ACB	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
HG03471	hp1	a0001	c0001	t0001	g0003	AFR	MSL	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
HG03471	hp2	a0001	c0007	t0001	g0014	AFR	MSL	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
HG06807	hp1	a0001	c0002	t0001	g0002	AFR	USA	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
HG06807	hp2	a0007	c0019	t0001	g0033	AFR	USA	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
NA20300	hp1	a0001	c0007	t0001	g0014	AFR	USA	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
NA20300	hp2	a0001	c0023	t0001	g0034	AFR	USA	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
NA21309	hp1	a0002	c0003	t0001	g0005	AFR	LWK	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
NA21309	hp2	a0001	c0001	t0001	g0003	AFR	LWK	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
homoSapiens_chm13v2	hp1	a0001	c0001	t0001	g0001	REF	REF	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645
homoSapiens_grch38	hp1	a0001	c0001	t0001	g0001	REF	REF	TLR9_chr3_52216080_52230645	TLR9	chr3	52216080	52230645

chr:pos	ref	alt	# # of ahapid:amino-acid(protein) level	ahapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	chr	pos
chr3:52221292	C C	G G	1	a0011 a0011	1	HG02486.hp2 HG02486.hp2	missense_variant	MODERATE	c.3024G>C c.3024G>C	p.Gln1008His p.Gln1008His	TLR9	ENSG00000239732.4	transcript	ENST00000360658.3	protein_coding	2/2	3140/3352	3024/3099	1008/1032	chr3	52221292
chr3:52221350	C C	T T	1	a0011 a0011	1	HG02486.hp2 HG02486.hp2	missense_variant	MODERATE	c.2966G>A c.2966G>A	p.Arg989His p.Arg989His	TLR9	ENSG00000239732.4	transcript	ENST00000360658.3	protein_coding	2/2	3082/3352	2966/3099	989/1032	chr3	52221350
chr3:52221431	C C	T T	1	a0011 a0011	1	HG02486.hp2 HG02486.hp2	missense_variant	MODERATE	c.2885G>A c.2885G>A	p.Arg962His p.Arg962His	TLR9	ENSG00000239732.4	transcript	ENST00000360658.3	protein_coding	2/2	3001/3352	2885/3099	962/1032	chr3	52221431
chr3:52221728	C C	T T	1	a0003 a0003	10	HG02486.hp1 HG02622.hp2 HG02970.hp2 others(7): Show HG02486.hp1 HG02622.hp2 HG02970.hp2 HG03098.hp1 HG03209.hp2 HG03834.hp2 HG04204.hp1 NA19030.hp1 NA19058.hp1 NA20129.hp2	missense_variant	MODERATE	c.2588G>A c.2588G>A	p.Arg863Gln p.Arg863Gln	TLR9	ENSG00000239732.4	transcript	ENST00000360658.3	protein_coding	2/2	2704/3352	2588/3099	863/1032	chr3	52221728
chr3:52221731	C C	T T	1	a0007 a0007	1	HG06807.hp2 HG06807.hp2	missense_variant	MODERATE	c.2585G>A c.2585G>A	p.Gly862Glu p.Gly862Glu	TLR9	ENSG00000239732.4	transcript	ENST00000360658.3	protein_coding	2/2	2701/3352	2585/3099	862/1032	chr3	52221731
chr3:52222212	G G	A A	1	a0008 a0008	1	HG00544.hp2 HG00544.hp2	missense_variant	MODERATE	c.2104C>T c.2104C>T	p.Arg702Trp p.Arg702Trp	TLR9	ENSG00000239732.4	transcript	ENST00000360658.3	protein_coding	2/2	2220/3352	2104/3099	702/1032	chr3	52222212
chr3:52222431	C C	T T	1	a0009 a0009	1	HG03041.hp1 HG03041.hp1	missense_variant	MODERATE	c.1885G>A c.1885G>A	p.Gly629Ser p.Gly629Ser	TLR9	ENSG00000239732.4	transcript	ENST00000360658.3	protein_coding	2/2	2001/3352	1885/3099	629/1032	chr3	52222431
chr3:52222592	C C	T T	1	a0005 a0005	2	NA18961.hp2 NA19072.hp2 NA18961.hp2 NA19072.hp2	missense_variant	MODERATE	c.1724G>A c.1724G>A	p.Arg575His p.Arg575His	TLR9	ENSG00000239732.4	transcript	ENST00000360658.3	protein_coding	2/2	1840/3352	1724/3099	575/1032	chr3	52222592
chr3:52222679	C C	A A	1	a0004 a0004	3	HG03710.hp2 HG04115.hp2 HG04204.hp2 HG03710.hp2 HG04115.hp2 HG04204.hp2	missense_variant	MODERATE	c.1637G>T c.1637G>T	p.Arg546Leu p.Arg546Leu	TLR9	ENSG00000239732.4	transcript	ENST00000360658.3	protein_coding	2/2	1753/3352	1637/3099	546/1032	chr3	52222679
chr3:52223031	C C	T T	1	a0010 a0010	1	NA19091.hp1 NA19091.hp1	missense_variant	MODERATE	c.1285G>A c.1285G>A	p.Gly429Arg p.Gly429Arg	TLR9	ENSG00000239732.4	transcript	ENST00000360658.3	protein_coding	2/2	1401/3352	1285/3099	429/1032	chr3	52223031
chr3:52223649	C C	T T	1	a0011 a0011	1	HG02486.hp2 HG02486.hp2	missense_variant	MODERATE	c.667G>A c.667G>A	p.Glu223Lys p.Glu223Lys	TLR9	ENSG00000239732.4	transcript	ENST00000360658.3	protein_coding	2/2	783/3352	667/3099	223/1032	chr3	52223649
chr3:52224119	G G	A A	1	a0006 a0006	1	HG00609.hp2 HG00609.hp2	missense_variant	MODERATE	c.197C>T c.197C>T	p.Thr66Ile p.Thr66Ile	TLR9	ENSG00000239732.4	transcript	ENST00000360658.3	protein_coding	2/2	313/3352	197/3099	66/1032	chr3	52224119
chr3:52224303	G G	A A	1	a0002 a0002	10	HG02451.hp1 HG02630.hp1 HG02717.hp2 others(7): Show HG02451.hp1 HG02630.hp1 HG02717.hp2 HG02886.hp2 HG02922.hp1 HG02965.hp2 HG03041.hp2 HG03130.hp1 HG03139.hp1 NA21309.hp1	missense_variant	MODERATE	c.13C>T c.13C>T	p.Arg5Cys p.Arg5Cys	TLR9	ENSG00000239732.4	transcript	ENST00000360658.3	protein_coding	2/2	129/3352	13/3099	5/1032	chr3	52224303

chr:pos	ref	alt	# # of chapid	chapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	chr	pos
chr3:52221223	G G	A A	1	a0008c0021 a0008c0021	1	HG00544.hp2 HG00544.hp2	synonymous_variant	LOW	c.3093C>T c.3093C>T	p.Ala1031Ala p.Ala1031Ala	TLR9	ENSG00000239732.4	transcript	ENST00000360658.3	protein_coding	2/2	3209/3352	3093/3099	1031/1032	chr3	52221223
chr3:52221376	G G	A A	1	a0001c0015 a0001c0015	1	HG00735.hp1 HG00735.hp1	synonymous_variant	LOW	c.2940C>T c.2940C>T	p.Tyr980Tyr p.Tyr980Tyr	TLR9	ENSG00000239732.4	transcript	ENST00000360658.3	protein_coding	2/2	3056/3352	2940/3099	980/1032	chr3	52221376
chr3:52221415	C C	G G	1	a0001c0020 a0001c0020	1	NA18986.hp1 NA18986.hp1	synonymous_variant	LOW	c.2901G>C c.2901G>C	p.Val967Val p.Val967Val	TLR9	ENSG00000239732.4	transcript	ENST00000360658.3	protein_coding	2/2	3017/3352	2901/3099	967/1032	chr3	52221415
chr3:52221496	C C	T T	1	a0001c0014 a0001c0014	1	HG02280.hp1 HG02280.hp1	synonymous_variant	LOW	c.2820G>A c.2820G>A	p.Thr940Thr p.Thr940Thr	TLR9	ENSG00000239732.4	transcript	ENST00000360658.3	protein_coding	2/2	2936/3352	2820/3099	940/1032	chr3	52221496
chr3:52221706	G G	A A	1	a0001c0016 a0001c0016	1	HG00733.hp2 HG00733.hp2	synonymous_variant	LOW	c.2610C>T c.2610C>T	p.Tyr870Tyr p.Tyr870Tyr	TLR9	ENSG00000239732.4	transcript	ENST00000360658.3	protein_coding	2/2	2726/3352	2610/3099	870/1032	chr3	52221706
chr3:52221850	C C	T T	1	a0001c0018 a0001c0018	1	HG04199.hp1 HG04199.hp1	synonymous_variant	LOW	c.2466G>A c.2466G>A	p.Ser822Ser p.Ser822Ser	TLR9	ENSG00000239732.4	transcript	ENST00000360658.3	protein_coding	2/2	2582/3352	2466/3099	822/1032	chr3	52221850
chr3:52222519	C C	T T	1	a0001c0017 a0001c0017	1	HG02698.hp1 HG02698.hp1	synonymous_variant	LOW	c.1797G>A c.1797G>A	p.Ser599Ser p.Ser599Ser	TLR9	ENSG00000239732.4	transcript	ENST00000360658.3	protein_coding	2/2	1913/3352	1797/3099	599/1032	chr3	52222519
chr3:52222681	C C	T T	14	a0001c0002 a0001c0009 a0001c0010 others(11): Show a0001c0002 a0001c0009 a0001c0010 a0001c0011 a0001c0014 a0001c0015 a0001c0016 a0001c0024 a0001c0026 a0003c0004 a0006c0027 a0009c0013 a0010c0012 a0011c0025	171	HG00280.hp1 HG00280.hp2 HG00323.hp2 others(168): Show HG00280.hp1 HG00280.hp2 HG00323.hp2 HG00438.hp2 HG00544.hp1 HG00558.hp1 HG00597.hp1 HG00609.hp1 HG00609.hp2 HG00621.hp1 HG00642.hp2 HG00673.hp2 HG00733.hp1 HG00733.hp2 HG00735.hp1 HG00738.hp1 HG00741.hp2 HG01069.hp1 HG01070.hp2 HG01071.hp2 HG01074.hp1 HG01081.hp1 HG01081.hp2 HG01106.hp2 HG01123.hp1 HG01123.hp2 HG01169.hp1 HG01192.hp1 HG01192.hp2 HG01255.hp1 HG01257.hp2 HG01258.hp1 HG01261.hp2 HG01358.hp1 HG01361.hp1 HG01361.hp2 HG01433.hp1 HG01496.hp2 HG01515.hp1 HG01515.hp2 HG01516.hp1 HG01517.hp1 HG01517.hp2 HG01891.hp1 HG01891.hp2 HG01943.hp2 HG01975.hp2 HG01978.hp2 HG01981.hp1 HG01993.hp2 HG02015.hp2 HG02040.hp1 HG02040.hp2 HG02083.hp2 HG02109.hp2 HG02129.hp2 HG02132.hp1 HG02148.hp1 HG02257.hp1 HG02257.hp2 HG02258.hp1 HG02273.hp1 HG02273.hp2 HG02280.hp1 HG02300.hp1 HG02300.hp2 HG02486.hp1 HG02486.hp2 HG02523.hp2 HG02572.hp1 HG02622.hp2 HG02647.hp2 HG02683.hp1 HG02717.hp1 HG02723.hp1 HG02818.hp2 HG02896.hp1 HG02897.hp1 HG02970.hp2 HG03017.hp2 HG03041.hp1 HG03098.hp1 HG03195.hp1 HG03195.hp2 HG03209.hp2 HG03239.hp1 HG03486.hp2 HG03490.hp2 HG03491.hp2 HG03492.hp1 HG03540.hp1 HG03688.hp1 HG03704.hp1 HG03704.hp2 HG03834.hp1 HG03942.hp2 HG04184.hp1 HG04228.hp1 HG06807.hp1 NA18522.hp2 NA18939.hp2 NA18940.hp1 NA18940.hp2 NA18941.hp1 NA18941.hp2 NA18943.hp2 NA18944.hp1 NA18944.hp2 NA18949.hp1 NA18952.hp1 NA18953.hp2 NA18956.hp1 NA18957.hp2 NA18961.hp1 NA18964.hp1 NA18965.hp2 NA18966.hp2 NA18967.hp1 NA18969.hp1 NA18970.hp2 NA18971.hp2 NA18972.hp2 NA18973.hp1 NA18974.hp1 NA18974.hp2 NA18975.hp2 NA18980.hp1 NA18981.hp1 NA18981.hp2 NA18982.hp1 NA18985.hp1 NA18985.hp2 NA18986.hp2 NA18987.hp1 NA18990.hp1 NA18995.hp1 NA18995.hp2 NA18998.hp2 NA19003.hp2 NA19005.hp1 NA19007.hp2 NA19009.hp2 NA19010.hp2 NA19011.hp1 NA19030.hp1 NA19043.hp1 NA19055.hp1 NA19055.hp2 NA19056.hp1 NA19058.hp2 NA19060.hp2 NA19062.hp1 NA19062.hp2 NA19063.hp1 NA19063.hp2 NA19065.hp1 NA19066.hp1 NA19068.hp1 NA19068.hp2 NA19079.hp2 NA19083.hp2 NA19085.hp1 NA19087.hp1 NA19088.hp1 NA19088.hp2 NA19091.hp1 NA19240.hp1 NA20129.hp2 NA20752.hp2 NA20805.hp1 NA20905.hp2	synonymous_variant	LOW	c.1635G>A c.1635G>A	p.Pro545Pro p.Pro545Pro	TLR9	ENSG00000239732.4	transcript	ENST00000360658.3	protein_coding	2/2	1751/3352	1635/3099	545/1032	chr3	52222681
chr3:52222789	C C	T T	1	a0003c0005 a0003c0005	3	HG03834.hp2 HG04204.hp1 NA19058.hp1 HG03834.hp2 HG04204.hp1 NA19058.hp1	synonymous_variant	LOW	c.1527G>A c.1527G>A	p.Ser509Ser p.Ser509Ser	TLR9	ENSG00000239732.4	transcript	ENST00000360658.3	protein_coding	2/2	1643/3352	1527/3099	509/1032	chr3	52222789
chr3:52223167	C C	T T	2	a0001c0011 a0003c0005 a0001c0011 a0003c0005	4	HG02647.hp2 HG03834.hp2 HG04204.hp1 others(1): Show HG02647.hp2 HG03834.hp2 HG04204.hp1 NA19058.hp1	synonymous_variant	LOW	c.1149G>A c.1149G>A	p.Thr383Thr p.Thr383Thr	TLR9	ENSG00000239732.4	transcript	ENST00000360658.3	protein_coding	2/2	1265/3352	1149/3099	383/1032	chr3	52223167
chr3:52223179	G G	A A	1	a0001c0022 a0001c0022	1	NA18959.hp2 NA18959.hp2	synonymous_variant	LOW	c.1137C>T c.1137C>T	p.Leu379Leu p.Leu379Leu	TLR9	ENSG00000239732.4	transcript	ENST00000360658.3	protein_coding	2/2	1253/3352	1137/3099	379/1032	chr3	52223179
chr3:52223613	G G	A A	1	a0001c0023 a0001c0023	1	NA20300.hp2 NA20300.hp2	synonymous_variant	LOW	c.703C>T c.703C>T	p.Leu235Leu p.Leu235Leu	TLR9	ENSG00000239732.4	transcript	ENST00000360658.3	protein_coding	2/2	819/3352	703/3099	235/1032	chr3	52223613
chr3:52223791	G G	A A	1	a0001c0024 a0001c0024	1	HG02717.hp1 HG02717.hp1	synonymous_variant	LOW	c.525C>T c.525C>T	p.Asp175Asp p.Asp175Asp	TLR9	ENSG00000239732.4	transcript	ENST00000360658.3	protein_coding	2/2	641/3352	525/3099	175/1032	chr3	52223791
chr3:52223812	G G	A A	2	a0001c0009 a0011c0025 a0001c0009 a0011c0025	3	HG02257.hp1 HG02486.hp2 NA19240.hp1 HG02257.hp1 HG02486.hp2 NA19240.hp1	synonymous_variant	LOW	c.504C>T c.504C>T	p.Ala168Ala p.Ala168Ala	TLR9	ENSG00000239732.4	transcript	ENST00000360658.3	protein_coding	2/2	620/3352	504/3099	168/1032	chr3	52223812
chr3:52223875	G G	T T	1	a0001c0007 a0001c0007	2	HG03471.hp2 NA20300.hp1 HG03471.hp2 NA20300.hp1	synonymous_variant	LOW	c.441C>A c.441C>A	p.Ser147Ser p.Ser147Ser	TLR9	ENSG00000239732.4	transcript	ENST00000360658.3	protein_coding	2/2	557/3352	441/3099	147/1032	chr3	52223875
chr3:52223974	G G	A A	1	a0001c0010 a0001c0010	2	HG01081.hp1 HG01192.hp2 HG01081.hp1 HG01192.hp2	synonymous_variant	LOW	c.342C>T c.342C>T	p.Ile114Ile p.Ile114Ile	TLR9	ENSG00000239732.4	transcript	ENST00000360658.3	protein_coding	2/2	458/3352	342/3099	114/1032	chr3	52223974
chr3:52224061	G G	A A	1	a0001c0026 a0001c0026	1	HG03704.hp1 HG03704.hp1	synonymous_variant	LOW	c.255C>T c.255C>T	p.His85His p.His85His	TLR9	ENSG00000239732.4	transcript	ENST00000360658.3	protein_coding	2/2	371/3352	255/3099	85/1032	chr3	52224061

chr:pos	ref	alt	# # of thapid:transcript level	thapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	distance	status	chr	pos
chr3:52221199	C C	G G	1	a0001c0002t0002 a0001c0002t0002	1	HG01255.hp1 HG01255.hp1	3_prime_UTR_variant	MODIFIER	c.18G>C c.18G>C		TLR9	ENSG00000239732.4	transcript	ENST00000360658.3	protein_coding	2/2				18		chr3	52221199

chr:pos	ref	alt	# # of ghapid:genebody level	ghapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	genename	geneid	featuretype	featureid	genebody_biotype	rank	chr	pos
chr3:52224356	T T	C C	31	a0001c0001t0001g0003 a0001c0001t0001g0010 a0001c0002t0001g0002 others(28): Show a0001c0001t0001g0003 a0001c0001t0001g0010 a0001c0002t0001g0002 a0001c0002t0001g0004 a0001c0002t0001g0006 a0001c0002t0001g0012 a0001c0002t0001g0016 a0001c0002t0001g0017 a0001c0002t0001g0018 a0001c0002t0001g0039 a0001c0002t0001g0040 a0001c0002t0002g0030 a0001c0007t0001g0014 a0001c0009t0001g0011 a0001c0010t0001g0015 a0001c0011t0001g0026 a0001c0014t0001g0029 a0001c0015t0001g0031 a0001c0016t0001g0032 a0001c0023t0001g0034 a0001c0024t0001g0035 a0001c0026t0001g0037 a0002c0003t0001g0005 a0002c0003t0001g0019 a0003c0004t0001g0007 a0003c0005t0001g0009 a0006c0027t0001g0038 a0007c0019t0001g0033 a0009c0013t0001g0028 a0010c0012t0001g0027 a0011c0025t0001g0036	212	HG00280.hp1 HG00280.hp2 HG00323.hp2 others(209): Show HG00280.hp1 HG00280.hp2 HG00323.hp2 HG00438.hp2 HG00544.hp1 HG00558.hp1 HG00597.hp1 HG00609.hp1 HG00609.hp2 HG00621.hp1 HG00642.hp2 HG00673.hp2 HG00733.hp1 HG00733.hp2 HG00735.hp1 HG00738.hp1 HG00741.hp2 HG01069.hp1 HG01070.hp2 HG01071.hp2 HG01074.hp1 HG01081.hp1 HG01081.hp2 HG01106.hp2 HG01123.hp1 HG01123.hp2 HG01169.hp1 HG01192.hp1 HG01192.hp2 HG01243.hp1 HG01255.hp1 HG01257.hp2 HG01258.hp1 HG01261.hp2 HG01358.hp1 HG01361.hp1 HG01361.hp2 HG01433.hp1 HG01496.hp2 HG01515.hp1 HG01515.hp2 HG01516.hp1 HG01517.hp1 HG01517.hp2 HG01884.hp2 HG01891.hp1 HG01891.hp2 HG01934.hp2 HG01943.hp2 HG01975.hp2 HG01978.hp2 HG01981.hp1 HG01993.hp2 HG02015.hp2 HG02040.hp1 HG02040.hp2 HG02083.hp2 HG02109.hp1 HG02109.hp2 HG02129.hp2 HG02132.hp1 HG02148.hp1 HG02257.hp1 HG02257.hp2 HG02258.hp1 HG02273.hp1 HG02273.hp2 HG02280.hp1 HG02280.hp2 HG02300.hp1 HG02300.hp2 HG02451.hp1 HG02451.hp2 HG02486.hp1 HG02486.hp2 HG02523.hp2 HG02559.hp1 HG02572.hp1 HG02622.hp1 HG02622.hp2 HG02630.hp1 HG02630.hp2 HG02647.hp1 HG02647.hp2 HG02683.hp1 HG02717.hp1 HG02717.hp2 HG02723.hp1 HG02809.hp1 HG02809.hp2 HG02818.hp2 HG02886.hp2 HG02896.hp1 HG02896.hp2 HG02897.hp1 HG02897.hp2 HG02922.hp1 HG02922.hp2 HG02965.hp2 HG02970.hp2 HG03017.hp2 HG03041.hp1 HG03041.hp2 HG03098.hp1 HG03130.hp1 HG03130.hp2 HG03139.hp1 HG03195.hp1 HG03195.hp2 HG03209.hp2 HG03225.hp2 HG03239.hp1 HG03471.hp1 HG03471.hp2 HG03486.hp2 HG03490.hp2 HG03491.hp2 HG03492.hp1 HG03516.hp1 HG03540.hp1 HG03579.hp1 HG03579.hp2 HG03688.hp1 HG03704.hp1 HG03704.hp2 HG03834.hp1 HG03834.hp2 HG04184.hp1 HG04204.hp1 HG04228.hp1 HG06807.hp1 HG06807.hp2 NA18522.hp2 NA18939.hp2 NA18940.hp1 NA18940.hp2 NA18941.hp1 NA18941.hp2 NA18943.hp2 NA18944.hp1 NA18944.hp2 NA18949.hp1 NA18952.hp1 NA18953.hp2 NA18956.hp1 NA18957.hp2 NA18961.hp1 NA18964.hp1 NA18965.hp2 NA18966.hp2 NA18967.hp1 NA18969.hp1 NA18970.hp2 NA18971.hp2 NA18972.hp2 NA18973.hp1 NA18974.hp1 NA18974.hp2 NA18975.hp2 NA18980.hp1 NA18981.hp1 NA18981.hp2 NA18982.hp1 NA18985.hp1 NA18985.hp2 NA18986.hp2 NA18987.hp1 NA18990.hp1 NA18995.hp1 NA18995.hp2 NA18998.hp2 NA19003.hp2 NA19005.hp1 NA19007.hp2 NA19009.hp2 NA19010.hp2 NA19011.hp1 NA19030.hp1 NA19030.hp2 NA19043.hp1 NA19043.hp2 NA19055.hp1 NA19055.hp2 NA19056.hp1 NA19058.hp1 NA19058.hp2 NA19060.hp2 NA19062.hp1 NA19062.hp2 NA19063.hp1 NA19063.hp2 NA19065.hp1 NA19066.hp1 NA19068.hp1 NA19068.hp2 NA19079.hp2 NA19083.hp2 NA19085.hp1 NA19087.hp1 NA19088.hp1 NA19088.hp2 NA19091.hp1 NA19240.hp1 NA20129.hp1 NA20129.hp2 NA20300.hp1 NA20300.hp2 NA20752.hp2 NA20805.hp1 NA20905.hp2 NA21309.hp1 NA21309.hp2	intron_variant	MODIFIER	c.4-44A>G c.4-44A>G	TLR9	ENSG00000239732.4	transcript	ENST00000360658.3	protein_coding	1/1	chr3	52224356
chr3:52224725	A A	T T	1	a0001c0001t0001g0043 a0001c0001t0001g0043	1	HG02015.hp1 HG02015.hp1	intron_variant	MODIFIER	c.4-413T>A c.4-413T>A	TLR9	ENSG00000239732.4	transcript	ENST00000360658.3	protein_coding	1/1	chr3	52224725
chr3:52224754	C C	T T	1	a0003c0005t0001g0009 a0003c0005t0001g0009	3	HG03834.hp2 HG04204.hp1 NA19058.hp1 HG03834.hp2 HG04204.hp1 NA19058.hp1	intron_variant	MODIFIER	c.4-442G>A c.4-442G>A	TLR9	ENSG00000239732.4	transcript	ENST00000360658.3	protein_coding	1/1	chr3	52224754
chr3:52224815	G G	A A	1	a0001c0002t0001g0039 a0001c0002t0001g0039	1	HG01975.hp2 HG01975.hp2	intron_variant	MODIFIER	c.4-503C>T c.4-503C>T	TLR9	ENSG00000239732.4	transcript	ENST00000360658.3	protein_coding	1/1	chr3	52224815
chr3:52224901	A A	G G	1	a0002c0003t0001g0019 a0002c0003t0001g0019	1	HG02886.hp2 HG02886.hp2	intron_variant	MODIFIER	c.4-589T>C c.4-589T>C	TLR9	ENSG00000239732.4	transcript	ENST00000360658.3	protein_coding	1/1	chr3	52224901
chr3:52224914	G G	T T	1	a0001c0002t0001g0018 a0001c0002t0001g0018	1	NA18985.hp1 NA18985.hp1	intron_variant	MODIFIER	c.4-602C>A c.4-602C>A	TLR9	ENSG00000239732.4	transcript	ENST00000360658.3	protein_coding	1/1	chr3	52224914
chr3:52225116	G G	C C	1	a0001c0002t0001g0040 a0001c0002t0001g0040	1	NA19063.hp1 NA19063.hp1	intron_variant	MODIFIER	c.3+411C>G c.3+411C>G	TLR9	ENSG00000239732.4	transcript	ENST00000360658.3	protein_coding	1/1	chr3	52225116
chr3:52225178	C C	G G	1	a0001c0002t0001g0006 a0001c0002t0001g0006	8	NA18966.hp2 NA18969.hp1 NA18973.hp1 others(5): Show NA18966.hp2 NA18969.hp1 NA18973.hp1 NA18975.hp2 NA18985.hp2 NA18987.hp1 NA19062.hp2 NA19068.hp1	intron_variant	MODIFIER	c.3+349G>C c.3+349G>C	TLR9	ENSG00000239732.4	transcript	ENST00000360658.3	protein_coding	1/1	chr3	52225178
chr3:52225201	A A	G G	1	a0001c0002t0001g0012 a0001c0002t0001g0012	2	HG01515.hp1 HG01517.hp2 HG01515.hp1 HG01517.hp2	intron_variant	MODIFIER	c.3+326T>C c.3+326T>C	TLR9	ENSG00000239732.4	transcript	ENST00000360658.3	protein_coding	1/1	chr3	52225201
chr3:52225241	G G	T T	1	a0001c0002t0001g0017 a0001c0002t0001g0017	1	NA18941.hp2 NA18941.hp2	intron_variant	MODIFIER	c.3+286C>A c.3+286C>A	TLR9	ENSG00000239732.4	transcript	ENST00000360658.3	protein_coding	1/1	chr3	52225241
chr3:52225343	C C	CA CA	4	a0001c0001t0001g0010 a0001c0001t0001g0041 a0001c0002t0001g0004 others(1): Show a0001c0001t0001g0010 a0001c0001t0001g0041 a0001c0002t0001g0004 a0003c0005t0001g0009	20	HG01074.hp1 HG01516.hp1 HG01517.hp1 others(17): Show HG01074.hp1 HG01516.hp1 HG01517.hp1 HG01891.hp1 HG02572.hp1 HG02622.hp1 HG02683.hp1 HG02723.hp1 HG02738.hp2 HG02809.hp2 HG03195.hp1 HG03195.hp2 HG03540.hp1 HG03579.hp1 HG03834.hp2 HG04204.hp1 NA18990.hp1 NA19043.hp1 NA19055.hp2 NA19058.hp1	intron_variant	MODIFIER	c.3+183dupT c.3+183dupT	TLR9	ENSG00000239732.4	transcript	ENST00000360658.3	protein_coding	1/1	chr3	52225343
chr3:52225359	G G	A A	1	a0001c0001t0001g0042 a0001c0001t0001g0042	1	NA18949.hp2 NA18949.hp2	intron_variant	MODIFIER	c.3+168C>T c.3+168C>T	TLR9	ENSG00000239732.4	transcript	ENST00000360658.3	protein_coding	1/1	chr3	52225359
chr3:52225367	A A	G G	1	a0001c0009t0001g0011 a0001c0009t0001g0011	2	HG02257.hp1 NA19240.hp1 HG02257.hp1 NA19240.hp1	intron_variant	MODIFIER	c.3+160T>C c.3+160T>C	TLR9	ENSG00000239732.4	transcript	ENST00000360658.3	protein_coding	1/1	chr3	52225367
chr3:52225420	TGTGGGTG others(7): Show TGTGGGTGACAACCC	T T	2	a0001c0002t0001g0016 a0003c0004t0001g0007 a0001c0002t0001g0016 a0003c0004t0001g0007	8	HG02486.hp1 HG02622.hp2 HG02970.hp2 others(5): Show HG02486.hp1 HG02622.hp2 HG02970.hp2 HG03098.hp1 HG03209.hp2 HG03486.hp2 NA19030.hp1 NA20129.hp2	intron_variant	MODIFIER	c.3+93_3+106delGGGTT others(9): Show c.3+93_3+106delGGGTTGTCACCCAC	TLR9	ENSG00000239732.4	transcript	ENST00000360658.3	protein_coding	1/1	chr3	52225420
chr3:52225484	C C	A A	1	a0001c0001t0001g0043 a0001c0001t0001g0043	1	HG02015.hp1 HG02015.hp1	intron_variant	MODIFIER	c.3+43G>T c.3+43G>T	TLR9	ENSG00000239732.4	transcript	ENST00000360658.3	protein_coding	1/1	chr3	52225484

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🧬 JoGo Online Haplotype Explorer TLR9_chr3_52216080_52230645

JoGo Local Haplotype Explorer (on iGV) TLR9_chr3_52216080_52230645

Translation Multiple Alignment View

ACTG-Haplotype Mutation Positions 3D Viewer

🧬 Gene Summary

AAmino acid(protein) Level Haplotype Info (Total: 11)

CCoding Level Haplotype Info (Total: 27)

TTranscript Level Haplotype Info (Total: 2)

GGenebody Level Haplotype Info (Total: 43)

A C AC Level (Amino Acid + Coding) Haplotype Info (Total: 27)

A C T ACT Level (Amino Acid + Coding + Transcript) Haplotype Info (Total: 28)

A C T G ACTG Level (Amino Acid + Coding + Transcript + Genebody) Haplotype Info (Total: 43)

Haplotype Details by Sample (Haploid Level) (Total: 372)

AAmino acid(protein) Level Haplotype Related Variants (Effect to Protein Coding Variants) (Total: 13)

CCoding Level Variants (Synonymous Mutations) (Total: 17)

TTranscript Level Haplotype Variants (5'UTR+3'UTR) (Total: 1)

GGenebody Level Haplotype Variants (Intron) (Total: 15)

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Annotation (Repeats)

Annotation (SNP Array)