JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TLX3_chr5_171304248_171317139	0/0	c0009	876	1	0	1	0	0	0	copy fasta	TLX3	chr5	171304248	171317139
TM2D1_chr1_61676046_61730141	1/1	c0001	624	385	91	70	166	14	42	copy fasta	TM2D1	chr1	61676046	61730141
TM2D1_chr1_61676046_61730141	0/0	c0002	624	3	3	0	0	0	0	copy fasta	TM2D1	chr1	61676046	61730141
TM2D2_chr8_38983808_39001509	1/1	c0001	645	431	94	78	195	16	46	copy fasta	TM2D2	chr8	38983808	39001509
TM2D2_chr8_38983808_39001509	0/0	c0002	645	1	0	0	1	0	0	copy fasta	TM2D2	chr8	38983808	39001509
TM2D3_chr15_101636848_101657381	0/1	c0001	744	337	71	50	173	13	29	copy fasta	TM2D3	chr15	101636848	101657381
TM2D3_chr15_101636848_101657381	0/0	c0002	744	65	24	23	5	2	11	copy fasta	TM2D3	chr15	101636848	101657381
TM2D3_chr15_101636848_101657381	0/0	c0003	744	6	0	5	0	1	0	copy fasta	TM2D3	chr15	101636848	101657381
TM2D3_chr15_101636848_101657381	0/0	c0004	744	4	0	4	0	0	0	copy fasta	TM2D3	chr15	101636848	101657381
TM2D3_chr15_101636848_101657381	1/0	c0005	744	4	0	0	0	0	3	copy fasta	TM2D3	chr15	101636848	101657381
TM2D3_chr15_101636848_101657381	0/0	c0006	744	2	2	0	0	0	0	copy fasta	TM2D3	chr15	101636848	101657381
TM2D3_chr15_101636848_101657381	0/0	c0007	744	1	0	0	1	0	0	copy fasta	TM2D3	chr15	101636848	101657381
TM2D3_chr15_101636848_101657381	0/0	c0008	744	1	0	0	1	0	0	copy fasta	TM2D3	chr15	101636848	101657381
TM2D3_chr15_101636848_101657381	0/0	c0009	744	1	0	0	0	0	1	copy fasta	TM2D3	chr15	101636848	101657381
TM2D3_chr15_101636848_101657381	0/0	c0010	744	1	1	0	0	0	0	copy fasta	TM2D3	chr15	101636848	101657381
TM4SF18_chr3_149313498_149338636	1/1	c0001	606	438	84	72	216	18	46	copy fasta	TM4SF18	chr3	149313498	149338636
TM4SF18_chr3_149313498_149338636	0/0	c0002	606	3	3	0	0	0	0	copy fasta	TM4SF18	chr3	149313498	149338636
TM4SF18_chr3_149313498_149338636	0/0	c0003	606	1	1	0	0	0	0	copy fasta	TM4SF18	chr3	149313498	149338636
TM4SF19_chr3_196318547_196343388	0/1	c0001	630	242	34	36	127	9	35	copy fasta	TM4SF19	chr3	196318547	196343388
TM4SF19_chr3_196318547_196343388	1/0	c0002	630	112	48	31	19	3	10	copy fasta	TM4SF19	chr3	196318547	196343388
TM4SF19_chr3_196318547_196343388	0/0	c0003	630	10	2	4	0	4	0	copy fasta	TM4SF19	chr3	196318547	196343388
TM4SF19_chr3_196318547_196343388	0/0	c0004	630	2	0	2	0	0	0	copy fasta	TM4SF19	chr3	196318547	196343388
TM4SF19_chr3_196318547_196343388	0/0	c0005	630	1	0	1	0	0	0	copy fasta	TM4SF19	chr3	196318547	196343388
TM4SF19_chr3_196318547_196343388	0/0	c0006	630	1	0	0	0	0	1	copy fasta	TM4SF19	chr3	196318547	196343388
TM4SF19_chr3_196318547_196343388	0/0	c0007	630	1	0	0	1	0	0	copy fasta	TM4SF19	chr3	196318547	196343388
TM4SF19_chr3_196318547_196343388	0/0	c0008	630	1	0	0	1	0	0	copy fasta	TM4SF19	chr3	196318547	196343388
TM4SF1_chr3_149364022_149382649	0/1	c0001	609	391	91	80	167	13	39	copy fasta	TM4SF1	chr3	149364022	149382649
TM4SF1_chr3_149364022_149382649	1/0	c0002	609	42	2	4	21	5	9	copy fasta	TM4SF1	chr3	149364022	149382649
TM4SF1_chr3_149364022_149382649	0/0	c0003	609	1	1	0	0	0	0	copy fasta	TM4SF1	chr3	149364022	149382649
TM4SF20_chr2_227357038_227384306	1/1	c0001	690	334	85	63	139	9	36	copy fasta	TM4SF20	chr2	227357038	227384306
TM4SF20_chr2_227357038_227384306	0/0	c0002	690	55	0	2	43	2	8	copy fasta	TM4SF20	chr2	227357038	227384306
TM4SF20_chr2_227357038_227384306	0/0	c0003	690	37	0	4	27	5	1	copy fasta	TM4SF20	chr2	227357038	227384306
TM4SF20_chr2_227357038_227384306	0/0	c0004	690	24	9	1	12	0	2	copy fasta	TM4SF20	chr2	227357038	227384306
TM4SF20_chr2_227357038_227384306	0/0	c0005	690	6	0	0	6	0	0	copy fasta	TM4SF20	chr2	227357038	227384306
TM4SF20_chr2_227357038_227384306	0/0	c0006	690	5	0	0	5	0	0	copy fasta	TM4SF20	chr2	227357038	227384306
TM4SF20_chr2_227357038_227384306	0/0	c0007	690	3	0	2	0	0	1	copy fasta	TM4SF20	chr2	227357038	227384306
TM4SF20_chr2_227357038_227384306	0/0	c0008	690	2	0	0	2	0	0	copy fasta	TM4SF20	chr2	227357038	227384306
TM4SF20_chr2_227357038_227384306	0/0	c0009	690	1	0	0	1	0	0	copy fasta	TM4SF20	chr2	227357038	227384306
TM4SF20_chr2_227357038_227384306	0/0	c0010	690	1	0	0	1	0	0	copy fasta	TM4SF20	chr2	227357038	227384306
TM4SF20_chr2_227357038_227384306	0/0	c0011	690	1	0	0	1	0	0	copy fasta	TM4SF20	chr2	227357038	227384306
TM4SF20_chr2_227357038_227384306	0/0	c0012	538	1	0	0	1	0	0	copy fasta	TM4SF20	chr2	227357038	227384306
TM4SF4_chr3_149469697_149508394	1/0	c0001	609	194	70	16	99	1	7	copy fasta	TM4SF4	chr3	149469697	149508394
TM4SF4_chr3_149469697_149508394	0/0	c0002	609	93	3	10	63	1	16	copy fasta	TM4SF4	chr3	149469697	149508394
TM4SF4_chr3_149469697_149508394	0/0	c0003	609	75	12	21	20	9	13	copy fasta	TM4SF4	chr3	149469697	149508394
TM4SF4_chr3_149469697_149508394	0/1	c0004	609	49	7	19	7	5	10	copy fasta	TM4SF4	chr3	149469697	149508394
TM4SF4_chr3_149469697_149508394	0/0	c0005	609	2	1	1	0	0	0	copy fasta	TM4SF4	chr3	149469697	149508394
TM4SF4_chr3_149469697_149508394	0/0	c0006	609	2	2	0	0	0	0	copy fasta	TM4SF4	chr3	149469697	149508394
TM4SF4_chr3_149469697_149508394	0/0	c0007	609	1	0	0	1	0	0	copy fasta	TM4SF4	chr3	149469697	149508394
TM4SF4_chr3_149469697_149508394	0/0	c0008	609	1	0	1	0	0	0	copy fasta	TM4SF4	chr3	149469697	149508394
TM4SF4_chr3_149469697_149508394	0/0	c0009	609	1	0	0	1	0	0	copy fasta	TM4SF4	chr3	149469697	149508394