JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TMEM200A_chr6_130361017_130448067	0/0	c0010	1476	1	1	0	0	0	0	copy fasta	TMEM200A	chr6	130361017	130448067
TMEM200A_chr6_130361017_130448067	0/0	c0011	1476	1	1	0	0	0	0	copy fasta	TMEM200A	chr6	130361017	130448067
TMEM200A_chr6_130361017_130448067	0/0	c0012	1476	1	0	0	1	0	0	copy fasta	TMEM200A	chr6	130361017	130448067
TMEM200A_chr6_130361017_130448067	0/0	c0013	1476	1	0	0	1	0	0	copy fasta	TMEM200A	chr6	130361017	130448067
TMEM200A_chr6_130361017_130448067	0/0	c0014	1476	1	0	0	1	0	0	copy fasta	TMEM200A	chr6	130361017	130448067
TMEM200A_chr6_130361017_130448067	0/0	c0015	1476	1	0	1	0	0	0	copy fasta	TMEM200A	chr6	130361017	130448067
TMEM200A_chr6_130361017_130448067	0/0	c0016	1476	1	0	0	1	0	0	copy fasta	TMEM200A	chr6	130361017	130448067
TMEM200A_chr6_130361017_130448067	0/0	c0017	1476	1	1	0	0	0	0	copy fasta	TMEM200A	chr6	130361017	130448067
TMEM200B_chr1_29114429_29128903	1/1	c0001	924	393	83	76	175	15	42	copy fasta	TMEM200B	chr1	29114429	29128903
TMEM200B_chr1_29114429_29128903	0/0	c0002	924	4	3	1	0	0	0	copy fasta	TMEM200B	chr1	29114429	29128903
TMEM200B_chr1_29114429_29128903	0/0	c0003	924	4	3	1	0	0	0	copy fasta	TMEM200B	chr1	29114429	29128903
TMEM200B_chr1_29114429_29128903	0/0	c0004	924	2	2	0	0	0	0	copy fasta	TMEM200B	chr1	29114429	29128903
TMEM200B_chr1_29114429_29128903	0/0	c0005	924	1	1	0	0	0	0	copy fasta	TMEM200B	chr1	29114429	29128903
TMEM200B_chr1_29114429_29128903	0/0	c0006	924	1	1	0	0	0	0	copy fasta	TMEM200B	chr1	29114429	29128903
TMEM200B_chr1_29114429_29128903	0/0	c0007	924	1	0	0	1	0	0	copy fasta	TMEM200B	chr1	29114429	29128903
TMEM200B_chr1_29114429_29128903	0/0	c0008	924	1	0	0	0	1	0	copy fasta	TMEM200B	chr1	29114429	29128903
TMEM200B_chr1_29114429_29128903	0/0	c0009	924	1	0	0	0	0	1	copy fasta	TMEM200B	chr1	29114429	29128903
TMEM200B_chr1_29114429_29128903	0/0	c0010	924	1	0	0	0	0	1	copy fasta	TMEM200B	chr1	29114429	29128903
TMEM200B_chr1_29114429_29128903	0/0	c0011	924	1	1	0	0	0	0	copy fasta	TMEM200B	chr1	29114429	29128903
TMEM200C_chr18_5877072_5900522	1/0	c0001	1866	261	43	47	125	13	32	copy fasta	TMEM200C	chr18	5877072	5900522
TMEM200C_chr18_5877072_5900522	0/1	c0002	1866	119	36	23	45	2	12	copy fasta	TMEM200C	chr18	5877072	5900522
TMEM200C_chr18_5877072_5900522	0/0	c0003	1866	13	10	3	0	0	0	copy fasta	TMEM200C	chr18	5877072	5900522
TMEM200C_chr18_5877072_5900522	0/0	c0004	1866	10	1	5	0	1	3	copy fasta	TMEM200C	chr18	5877072	5900522
TMEM200C_chr18_5877072_5900522	0/0	c0005	1866	10	0	3	7	0	0	copy fasta	TMEM200C	chr18	5877072	5900522
TMEM200C_chr18_5877072_5900522	0/0	c0006	1866	5	0	0	5	0	0	copy fasta	TMEM200C	chr18	5877072	5900522
TMEM200C_chr18_5877072_5900522	0/0	c0007	1866	2	2	0	0	0	0	copy fasta	TMEM200C	chr18	5877072	5900522
TMEM200C_chr18_5877072_5900522	0/0	c0008	1854	2	0	0	0	0	2	copy fasta	TMEM200C	chr18	5877072	5900522
TMEM200C_chr18_5877072_5900522	0/0	c0009	1851	2	0	0	2	0	0	copy fasta	TMEM200C	chr18	5877072	5900522
TMEM200C_chr18_5877072_5900522	0/0	c0010	1845	1	0	0	1	0	0	copy fasta	TMEM200C	chr18	5877072	5900522
TMEM200C_chr18_5877072_5900522	0/0	c0011	1866	1	0	0	1	0	0	copy fasta	TMEM200C	chr18	5877072	5900522
TMEM200C_chr18_5877072_5900522	0/0	c0012	1866	1	0	1	0	0	0	copy fasta	TMEM200C	chr18	5877072	5900522
TMEM200C_chr18_5877072_5900522	0/0	c0013	1866	1	0	0	0	0	1	copy fasta	TMEM200C	chr18	5877072	5900522
TMEM200C_chr18_5877072_5900522	0/0	c0014	1866	1	0	0	1	0	0	copy fasta	TMEM200C	chr18	5877072	5900522
TMEM200C_chr18_5877072_5900522	0/0	c0015	1878	1	0	0	1	0	0	copy fasta	TMEM200C	chr18	5877072	5900522
TMEM200C_chr18_5877072_5900522	0/0	c0016	1839	1	0	0	0	1	0	copy fasta	TMEM200C	chr18	5877072	5900522
TMEM200C_chr18_5877072_5900522	0/0	c0017	1866	1	0	0	1	0	0	copy fasta	TMEM200C	chr18	5877072	5900522
TMEM200C_chr18_5877072_5900522	0/0	c0018	1879	1	0	0	1	0	0	copy fasta	TMEM200C	chr18	5877072	5900522
TMEM200C_chr18_5877072_5900522	0/0	c0019	1854	1	1	0	0	0	0	copy fasta	TMEM200C	chr18	5877072	5900522
TMEM200C_chr18_5877072_5900522	0/0	c0020	1866	1	0	0	1	0	0	copy fasta	TMEM200C	chr18	5877072	5900522
TMEM200C_chr18_5877072_5900522	0/0	c0021	1866	1	1	0	0	0	0	copy fasta	TMEM200C	chr18	5877072	5900522
TMEM200C_chr18_5877072_5900522	0/0	c0022	1866	1	0	0	0	1	0	copy fasta	TMEM200C	chr18	5877072	5900522
TMEM200C_chr18_5877072_5900522	0/0	c0023	1866	1	0	0	1	0	0	copy fasta	TMEM200C	chr18	5877072	5900522
TMEM201_chr1_9583911_9619877	0/1	c0001	2001	181	36	31	84	6	23	copy fasta	TMEM201	chr1	9583911	9619877
TMEM201_chr1_9583911_9619877	1/0	c0002	2001	112	16	14	64	4	13	copy fasta	TMEM201	chr1	9583911	9619877
TMEM201_chr1_9583911_9619877	0/0	c0003	2001	11	8	1	0	0	2	copy fasta	TMEM201	chr1	9583911	9619877
TMEM201_chr1_9583911_9619877	0/0	c0004	2001	9	9	0	0	0	0	copy fasta	TMEM201	chr1	9583911	9619877
TMEM201_chr1_9583911_9619877	0/0	c0005	2001	7	7	0	0	0	0	copy fasta	TMEM201	chr1	9583911	9619877
TMEM201_chr1_9583911_9619877	0/0	c0006	2001	6	6	0	0	0	0	copy fasta	TMEM201	chr1	9583911	9619877
TMEM201_chr1_9583911_9619877	0/0	c0007	2001	2	2	0	0	0	0	copy fasta	TMEM201	chr1	9583911	9619877
TMEM201_chr1_9583911_9619877	0/0	c0008	2001	2	1	1	0	0	0	copy fasta	TMEM201	chr1	9583911	9619877