JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TNFRSF4_chr1_1206340_1219153	0/0	c0005	834	1	0	0	1	0	0	copy fasta	TNFRSF4	chr1	1206340	1219153
TNFRSF4_chr1_1206340_1219153	0/0	c0006	834	1	0	0	1	0	0	copy fasta	TNFRSF4	chr1	1206340	1219153
TNFRSF4_chr1_1206340_1219153	0/0	c0007	834	1	0	0	0	0	1	copy fasta	TNFRSF4	chr1	1206340	1219153
TNFRSF4_chr1_1206340_1219153	0/0	c0008	834	1	0	1	0	0	0	copy fasta	TNFRSF4	chr1	1206340	1219153
TNFRSF4_chr1_1206340_1219153	0/0	c0009	834	1	1	0	0	0	0	copy fasta	TNFRSF4	chr1	1206340	1219153
TNFRSF6B_chr20_63691652_63703684	0/0	c0001	903	28	14	7	1	2	4	copy fasta	TNFRSF6B	chr20	63691652	63703684
TNFRSF6B_chr20_63691652_63703684	0/0	c0002	903	2	2	0	0	0	0	copy fasta	TNFRSF6B	chr20	63691652	63703684
TNFRSF6B_chr20_63691652_63703684	1/0	c0003	903	1	0	0	0	0	0	copy fasta	TNFRSF6B	chr20	63691652	63703684
TNFRSF6B_chr20_63691652_63703684	0/0	c0004	903	1	0	1	0	0	0	copy fasta	TNFRSF6B	chr20	63691652	63703684
TNFRSF6B_chr20_63691652_63703684	0/0	c0005	903	1	0	0	1	0	0	copy fasta	TNFRSF6B	chr20	63691652	63703684
TNFRSF8_chr1_12058303_12149207	1/1	c0001	1788	147	30	35	51	9	20	copy fasta	TNFRSF8	chr1	12058303	12149207
TNFRSF8_chr1_12058303_12149207	0/0	c0002	1788	70	3	21	25	4	17	copy fasta	TNFRSF8	chr1	12058303	12149207
TNFRSF8_chr1_12058303_12149207	0/0	c0003	1788	61	26	7	27	0	1	copy fasta	TNFRSF8	chr1	12058303	12149207
TNFRSF8_chr1_12058303_12149207	0/0	c0004	1788	24	10	0	13	0	1	copy fasta	TNFRSF8	chr1	12058303	12149207
TNFRSF8_chr1_12058303_12149207	0/0	c0005	1788	13	8	0	5	0	0	copy fasta	TNFRSF8	chr1	12058303	12149207
TNFRSF8_chr1_12058303_12149207	0/0	c0006	1788	11	3	1	6	0	1	copy fasta	TNFRSF8	chr1	12058303	12149207
TNFRSF8_chr1_12058303_12149207	0/0	c0007	1788	3	3	0	0	0	0	copy fasta	TNFRSF8	chr1	12058303	12149207
TNFRSF8_chr1_12058303_12149207	0/0	c0008	1788	3	0	0	2	1	0	copy fasta	TNFRSF8	chr1	12058303	12149207
TNFRSF8_chr1_12058303_12149207	0/0	c0009	1788	3	3	0	0	0	0	copy fasta	TNFRSF8	chr1	12058303	12149207
TNFRSF8_chr1_12058303_12149207	0/0	c0010	1788	3	1	0	2	0	0	copy fasta	TNFRSF8	chr1	12058303	12149207
TNFRSF8_chr1_12058303_12149207	0/0	c0011	1788	3	1	0	2	0	0	copy fasta	TNFRSF8	chr1	12058303	12149207
TNFRSF8_chr1_12058303_12149207	0/0	c0012	1788	2	2	0	0	0	0	copy fasta	TNFRSF8	chr1	12058303	12149207
TNFRSF8_chr1_12058303_12149207	0/0	c0013	1788	2	0	0	2	0	0	copy fasta	TNFRSF8	chr1	12058303	12149207
TNFRSF8_chr1_12058303_12149207	0/0	c0014	1788	1	0	0	1	0	0	copy fasta	TNFRSF8	chr1	12058303	12149207
TNFRSF8_chr1_12058303_12149207	0/0	c0015	1788	1	0	1	0	0	0	copy fasta	TNFRSF8	chr1	12058303	12149207
TNFRSF8_chr1_12058303_12149207	0/0	c0016	1788	1	1	0	0	0	0	copy fasta	TNFRSF8	chr1	12058303	12149207
TNFRSF8_chr1_12058303_12149207	0/0	c0017	1788	1	0	0	0	1	0	copy fasta	TNFRSF8	chr1	12058303	12149207
TNFRSF8_chr1_12058303_12149207	0/0	c0018	1788	1	1	0	0	0	0	copy fasta	TNFRSF8	chr1	12058303	12149207
TNFRSF8_chr1_12058303_12149207	0/0	c0019	1788	1	0	0	1	0	0	copy fasta	TNFRSF8	chr1	12058303	12149207
TNFRSF8_chr1_12058303_12149207	0/0	c0020	1788	1	0	0	0	1	0	copy fasta	TNFRSF8	chr1	12058303	12149207
TNFRSF8_chr1_12058303_12149207	0/0	c0021	1788	1	0	1	0	0	0	copy fasta	TNFRSF8	chr1	12058303	12149207
TNFRSF8_chr1_12058303_12149207	0/0	c0022	1788	1	0	0	1	0	0	copy fasta	TNFRSF8	chr1	12058303	12149207
TNFRSF8_chr1_12058303_12149207	0/0	c0023	1788	1	0	0	1	0	0	copy fasta	TNFRSF8	chr1	12058303	12149207
TNFRSF8_chr1_12058303_12149207	0/0	c0024	1788	1	1	0	0	0	0	copy fasta	TNFRSF8	chr1	12058303	12149207
TNFRSF8_chr1_12058303_12149207	0/0	c0025	1788	1	1	0	0	0	0	copy fasta	TNFRSF8	chr1	12058303	12149207
TNFRSF8_chr1_12058303_12149207	0/0	c0026	1788	1	0	0	1	0	0	copy fasta	TNFRSF8	chr1	12058303	12149207
TNFRSF8_chr1_12058303_12149207	0/0	c0027	1788	1	0	0	1	0	0	copy fasta	TNFRSF8	chr1	12058303	12149207
TNFRSF8_chr1_12058303_12149207	0/0	c0028	1788	1	0	0	1	0	0	copy fasta	TNFRSF8	chr1	12058303	12149207
TNFRSF8_chr1_12058303_12149207	0/0	c0029	1788	1	0	0	1	0	0	copy fasta	TNFRSF8	chr1	12058303	12149207
TNFRSF8_chr1_12058303_12149207	0/0	c0030	1788	1	0	0	1	0	0	copy fasta	TNFRSF8	chr1	12058303	12149207
TNFRSF9_chr1_7910871_7945839	1/1	c0001	768	362	77	67	168	18	30	copy fasta	TNFRSF9	chr1	7910871	7945839
TNFRSF9_chr1_7910871_7945839	0/0	c0002	768	6	5	1	0	0	0	copy fasta	TNFRSF9	chr1	7910871	7945839
TNFRSF9_chr1_7910871_7945839	0/0	c0003	768	6	4	2	0	0	0	copy fasta	TNFRSF9	chr1	7910871	7945839
TNFRSF9_chr1_7910871_7945839	0/0	c0004	768	4	4	0	0	0	0	copy fasta	TNFRSF9	chr1	7910871	7945839
TNFRSF9_chr1_7910871_7945839	0/0	c0005	768	2	2	0	0	0	0	copy fasta	TNFRSF9	chr1	7910871	7945839
TNFRSF9_chr1_7910871_7945839	0/0	c0006	768	1	0	0	1	0	0	copy fasta	TNFRSF9	chr1	7910871	7945839
TNFRSF9_chr1_7910871_7945839	0/0	c0007	768	1	0	0	1	0	0	copy fasta	TNFRSF9	chr1	7910871	7945839
TNFRSF9_chr1_7910871_7945839	0/0	c0008	768	1	0	0	1	0	0	copy fasta	TNFRSF9	chr1	7910871	7945839
TNFRSF9_chr1_7910871_7945839	0/0	c0009	768	1	0	0	1	0	0	copy fasta	TNFRSF9	chr1	7910871	7945839
TNFSF10_chr3_172500508_172528430	0/0	c0001	846	253	51	51	113	14	24	copy fasta	TNFSF10	chr3	172500508	172528430