JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TNRC18_chr7_5301811_5428834	0/0	c0232	8907	1	0	1	0	0	0	copy fasta	TNRC18	chr7	5301811	5428834
TNRC18_chr7_5301811_5428834	0/0	c0233	8913	1	1	0	0	0	0	copy fasta	TNRC18	chr7	5301811	5428834
TNRC18_chr7_5301811_5428834	0/0	c0234	8907	1	0	0	0	1	0	copy fasta	TNRC18	chr7	5301811	5428834
TNRC18_chr7_5301811_5428834	0/0	c0235	8907	1	0	0	0	0	1	copy fasta	TNRC18	chr7	5301811	5428834
TNRC18_chr7_5301811_5428834	1/0	c0236	8907	1	0	0	0	0	0	copy fasta	TNRC18	chr7	5301811	5428834
TNRC18_chr7_5301811_5428834	0/0	c0237	8907	1	0	0	0	1	0	copy fasta	TNRC18	chr7	5301811	5428834
TNRC18_chr7_5301811_5428834	0/0	c0238	8908	1	1	0	0	0	0	copy fasta	TNRC18	chr7	5301811	5428834
TNRC18_chr7_5301811_5428834	0/0	c0239	8901	1	0	1	0	0	0	copy fasta	TNRC18	chr7	5301811	5428834
TNRC18_chr7_5301811_5428834	0/0	c0240	8907	1	1	0	0	0	0	copy fasta	TNRC18	chr7	5301811	5428834
TNRC18_chr7_5301811_5428834	0/0	c0241	8907	1	0	1	0	0	0	copy fasta	TNRC18	chr7	5301811	5428834
TNRC6A_chr16_24724651_24831218	1/0	c0001	5889	132	13	24	75	7	12	copy fasta	TNRC6A	chr16	24724651	24831218
TNRC6A_chr16_24724651_24831218	0/0	c0002	5889	91	15	13	56	1	6	copy fasta	TNRC6A	chr16	24724651	24831218
TNRC6A_chr16_24724651_24831218	0/0	c0003	5877	34	6	9	12	0	7	copy fasta	TNRC6A	chr16	24724651	24831218
TNRC6A_chr16_24724651_24831218	0/0	c0004	5889	23	14	5	0	2	2	copy fasta	TNRC6A	chr16	24724651	24831218
TNRC6A_chr16_24724651_24831218	0/0	c0005	5889	12	12	0	0	0	0	copy fasta	TNRC6A	chr16	24724651	24831218
TNRC6A_chr16_24724651_24831218	0/0	c0006	5889	11	10	1	0	0	0	copy fasta	TNRC6A	chr16	24724651	24831218
TNRC6A_chr16_24724651_24831218	0/0	c0007	5889	6	0	3	3	0	0	copy fasta	TNRC6A	chr16	24724651	24831218
TNRC6A_chr16_24724651_24831218	0/0	c0008	5877	5	3	2	0	0	0	copy fasta	TNRC6A	chr16	24724651	24831218
TNRC6A_chr16_24724651_24831218	0/1	c0009	5889	4	0	1	0	2	0	copy fasta	TNRC6A	chr16	24724651	24831218
TNRC6A_chr16_24724651_24831218	0/0	c0010	5889	3	0	1	0	0	2	copy fasta	TNRC6A	chr16	24724651	24831218
TNRC6A_chr16_24724651_24831218	0/0	c0011	5889	3	3	0	0	0	0	copy fasta	TNRC6A	chr16	24724651	24831218
TNRC6A_chr16_24724651_24831218	0/0	c0012	5889	3	3	0	0	0	0	copy fasta	TNRC6A	chr16	24724651	24831218
TNRC6A_chr16_24724651_24831218	0/0	c0013	5889	2	2	0	0	0	0	copy fasta	TNRC6A	chr16	24724651	24831218
TNRC6A_chr16_24724651_24831218	0/0	c0014	5931	1	0	1	0	0	0	copy fasta	TNRC6A	chr16	24724651	24831218
TNRC6A_chr16_24724651_24831218	0/0	c0015	5889	1	0	0	1	0	0	copy fasta	TNRC6A	chr16	24724651	24831218
TNRC6A_chr16_24724651_24831218	0/0	c0016	5889	1	0	1	0	0	0	copy fasta	TNRC6A	chr16	24724651	24831218
TNRC6A_chr16_24724651_24831218	0/0	c0017	5889	1	0	1	0	0	0	copy fasta	TNRC6A	chr16	24724651	24831218
TNRC6A_chr16_24724651_24831218	0/0	c0018	5889	1	1	0	0	0	0	copy fasta	TNRC6A	chr16	24724651	24831218
TNRC6A_chr16_24724651_24831218	0/0	c0019	5889	1	0	0	1	0	0	copy fasta	TNRC6A	chr16	24724651	24831218
TNRC6A_chr16_24724651_24831218	0/0	c0020	5889	1	0	0	1	0	0	copy fasta	TNRC6A	chr16	24724651	24831218
TNRC6A_chr16_24724651_24831218	0/0	c0021	5889	1	1	0	0	0	0	copy fasta	TNRC6A	chr16	24724651	24831218
TNRC6A_chr16_24724651_24831218	0/0	c0022	5889	1	0	1	0	0	0	copy fasta	TNRC6A	chr16	24724651	24831218
TNRC6A_chr16_24724651_24831218	0/0	c0023	5889	1	0	0	0	0	1	copy fasta	TNRC6A	chr16	24724651	24831218
TNRC6A_chr16_24724651_24831218	0/0	c0024	5889	1	0	1	0	0	0	copy fasta	TNRC6A	chr16	24724651	24831218
TNRC6A_chr16_24724651_24831218	0/0	c0025	5889	1	0	0	1	0	0	copy fasta	TNRC6A	chr16	24724651	24831218
TNRC6A_chr16_24724651_24831218	0/0	c0026	5889	1	0	0	0	0	1	copy fasta	TNRC6A	chr16	24724651	24831218
TNRC6A_chr16_24724651_24831218	0/0	c0027	5877	1	0	0	1	0	0	copy fasta	TNRC6A	chr16	24724651	24831218
TNRC6A_chr16_24724651_24831218	0/0	c0028	5877	1	0	1	0	0	0	copy fasta	TNRC6A	chr16	24724651	24831218
TNRC6A_chr16_24724651_24831218	0/0	c0029	5877	1	0	0	1	0	0	copy fasta	TNRC6A	chr16	24724651	24831218
TNRC6A_chr16_24724651_24831218	0/0	c0030	5877	1	0	0	1	0	0	copy fasta	TNRC6A	chr16	24724651	24831218
TNRC6A_chr16_24724651_24831218	0/0	c0031	5877	1	1	0	0	0	0	copy fasta	TNRC6A	chr16	24724651	24831218
TNRC6A_chr16_24724651_24831218	0/0	c0032	5889	1	1	0	0	0	0	copy fasta	TNRC6A	chr16	24724651	24831218
TNRC6A_chr16_24724651_24831218	0/0	c0033	5868	1	0	0	0	0	1	copy fasta	TNRC6A	chr16	24724651	24831218
TNRC6A_chr16_24724651_24831218	0/0	c0034	5889	1	0	1	0	0	0	copy fasta	TNRC6A	chr16	24724651	24831218
TNRC6A_chr16_24724651_24831218	0/0	c0035	5889	1	1	0	0	0	0	copy fasta	TNRC6A	chr16	24724651	24831218
TNRC6A_chr16_24724651_24831218	0/0	c0036	5889	1	0	0	1	0	0	copy fasta	TNRC6A	chr16	24724651	24831218
TNRC6B_chr22_40172925_40340808	1/1	c0001	5502	238	36	37	126	9	28	copy fasta	TNRC6B	chr22	40172925	40340808
TNRC6B_chr22_40172925_40340808	0/0	c0002	5499	44	21	13	2	1	7	copy fasta	TNRC6B	chr22	40172925	40340808
TNRC6B_chr22_40172925_40340808	0/0	c0003	5502	3	0	0	3	0	0	copy fasta	TNRC6B	chr22	40172925	40340808
TNRC6B_chr22_40172925_40340808	0/0	c0004	5502	3	2	1	0	0	0	copy fasta	TNRC6B	chr22	40172925	40340808