JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TRIM43B_chr2_95472008_95489754	0/0	c0003	1341	4	0	0	4	0	0	copy fasta	TRIM43B	chr2	95472008	95489754
TRIM43B_chr2_95472008_95489754	0/0	c0004	1341	4	0	0	4	0	0	copy fasta	TRIM43B	chr2	95472008	95489754
TRIM43B_chr2_95472008_95489754	0/0	c0005	1341	3	1	0	2	0	0	copy fasta	TRIM43B	chr2	95472008	95489754
TRIM43B_chr2_95472008_95489754	0/0	c0006	1341	2	1	0	1	0	0	copy fasta	TRIM43B	chr2	95472008	95489754
TRIM43B_chr2_95472008_95489754	0/0	c0007	1341	2	0	0	0	0	2	copy fasta	TRIM43B	chr2	95472008	95489754
TRIM43B_chr2_95472008_95489754	0/0	c0008	1341	2	2	0	0	0	0	copy fasta	TRIM43B	chr2	95472008	95489754
TRIM43B_chr2_95472008_95489754	0/0	c0009	1341	2	2	0	0	0	0	copy fasta	TRIM43B	chr2	95472008	95489754
TRIM43B_chr2_95472008_95489754	0/0	c0010	1341	1	0	1	0	0	0	copy fasta	TRIM43B	chr2	95472008	95489754
TRIM43B_chr2_95472008_95489754	0/0	c0011	1341	1	0	0	0	0	1	copy fasta	TRIM43B	chr2	95472008	95489754
TRIM43B_chr2_95472008_95489754	0/0	c0012	1341	1	0	0	1	0	0	copy fasta	TRIM43B	chr2	95472008	95489754
TRIM43B_chr2_95472008_95489754	0/0	c0013	1341	1	1	0	0	0	0	copy fasta	TRIM43B	chr2	95472008	95489754
TRIM43B_chr2_95472008_95489754	0/0	c0014	1341	1	0	1	0	0	0	copy fasta	TRIM43B	chr2	95472008	95489754
TRIM43B_chr2_95472008_95489754	0/0	c0015	1341	1	1	0	0	0	0	copy fasta	TRIM43B	chr2	95472008	95489754
TRIM43B_chr2_95472008_95489754	0/0	c0016	1341	1	0	1	0	0	0	copy fasta	TRIM43B	chr2	95472008	95489754
TRIM43B_chr2_95472008_95489754	0/0	c0017	1341	1	0	0	0	0	1	copy fasta	TRIM43B	chr2	95472008	95489754
TRIM43B_chr2_95472008_95489754	0/0	c0018	1341	1	0	0	1	0	0	copy fasta	TRIM43B	chr2	95472008	95489754
TRIM43B_chr2_95472008_95489754	0/0	c0019	1341	1	0	0	0	0	1	copy fasta	TRIM43B	chr2	95472008	95489754
TRIM43_chr2_95587001_95604778	1/0	c0001	1341	362	82	72	166	9	32	copy fasta	TRIM43	chr2	95587001	95604778
TRIM43_chr2_95587001_95604778	0/0	c0002	1341	10	2	0	6	0	2	copy fasta	TRIM43	chr2	95587001	95604778
TRIM43_chr2_95587001_95604778	0/0	c0003	1341	4	1	1	1	1	0	copy fasta	TRIM43	chr2	95587001	95604778
TRIM43_chr2_95587001_95604778	0/0	c0004	1341	3	3	0	0	0	0	copy fasta	TRIM43	chr2	95587001	95604778
TRIM43_chr2_95587001_95604778	0/0	c0005	1341	2	0	0	2	0	0	copy fasta	TRIM43	chr2	95587001	95604778
TRIM43_chr2_95587001_95604778	0/0	c0006	1341	2	0	0	1	0	1	copy fasta	TRIM43	chr2	95587001	95604778
TRIM43_chr2_95587001_95604778	0/0	c0007	1341	1	0	0	1	0	0	copy fasta	TRIM43	chr2	95587001	95604778
TRIM43_chr2_95587001_95604778	0/0	c0008	1341	1	0	0	0	0	1	copy fasta	TRIM43	chr2	95587001	95604778
TRIM43_chr2_95587001_95604778	0/0	c0009	1341	1	0	0	0	0	1	copy fasta	TRIM43	chr2	95587001	95604778
TRIM43_chr2_95587001_95604778	0/0	c0010	1341	1	0	0	1	0	0	copy fasta	TRIM43	chr2	95587001	95604778
TRIM43_chr2_95587001_95604778	0/1	c0011	1341	1	0	0	0	0	0	copy fasta	TRIM43	chr2	95587001	95604778
TRIM43_chr2_95587001_95604778	0/0	c0012	1341	1	0	0	0	0	1	copy fasta	TRIM43	chr2	95587001	95604778
TRIM43_chr2_95587001_95604778	0/0	c0013	1341	1	0	0	0	0	1	copy fasta	TRIM43	chr2	95587001	95604778
TRIM43_chr2_95587001_95604778	0/0	c0014	1341	1	1	0	0	0	0	copy fasta	TRIM43	chr2	95587001	95604778
TRIM43_chr2_95587001_95604778	0/0	c0015	1341	1	1	0	0	0	0	copy fasta	TRIM43	chr2	95587001	95604778
TRIM43_chr2_95587001_95604778	0/0	c0016	1341	1	0	1	0	0	0	copy fasta	TRIM43	chr2	95587001	95604778
TRIM43_chr2_95587001_95604778	0/0	c0017	1341	1	0	0	0	0	1	copy fasta	TRIM43	chr2	95587001	95604778
TRIM44_chr11_35657775_35823007	1/1	c0001	1035	390	94	76	173	14	31	copy fasta	TRIM44	chr11	35657775	35823007
TRIM44_chr11_35657775_35823007	0/0	c0002	1035	1	0	0	1	0	0	copy fasta	TRIM44	chr11	35657775	35823007
TRIM44_chr11_35657775_35823007	0/0	c0003	1035	1	0	0	0	0	1	copy fasta	TRIM44	chr11	35657775	35823007
TRIM45_chr1_117106060_117126749	1/1	c0001	1743	144	22	27	72	5	16	copy fasta	TRIM45	chr1	117106060	117126749
TRIM45_chr1_117106060_117126749	0/0	c0002	1743	64	24	23	3	5	9	copy fasta	TRIM45	chr1	117106060	117126749
TRIM45_chr1_117106060_117126749	0/0	c0003	1743	51	26	10	10	2	3	copy fasta	TRIM45	chr1	117106060	117126749
TRIM45_chr1_117106060_117126749	0/0	c0004	1743	40	5	12	18	2	3	copy fasta	TRIM45	chr1	117106060	117126749
TRIM45_chr1_117106060_117126749	0/0	c0005	1743	30	3	0	22	0	5	copy fasta	TRIM45	chr1	117106060	117126749
TRIM45_chr1_117106060_117126749	0/0	c0006	1743	5	5	0	0	0	0	copy fasta	TRIM45	chr1	117106060	117126749
TRIM45_chr1_117106060_117126749	0/0	c0007	1743	4	4	0	0	0	0	copy fasta	TRIM45	chr1	117106060	117126749
TRIM45_chr1_117106060_117126749	0/0	c0008	1743	3	0	2	0	1	0	copy fasta	TRIM45	chr1	117106060	117126749
TRIM45_chr1_117106060_117126749	0/0	c0009	1743	2	2	0	0	0	0	copy fasta	TRIM45	chr1	117106060	117126749
TRIM45_chr1_117106060_117126749	0/0	c0010	1743	2	0	0	2	0	0	copy fasta	TRIM45	chr1	117106060	117126749
TRIM45_chr1_117106060_117126749	0/0	c0011	1743	2	2	0	0	0	0	copy fasta	TRIM45	chr1	117106060	117126749
TRIM45_chr1_117106060_117126749	0/0	c0012	1743	2	2	0	0	0	0	copy fasta	TRIM45	chr1	117106060	117126749
TRIM45_chr1_117106060_117126749	0/0	c0013	1743	2	2	0	0	0	0	copy fasta	TRIM45	chr1	117106060	117126749