JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TRIM49B_chr11_49023823_49043155	0/1	c0003	1359	90	36	13	36	0	4	copy fasta	TRIM49B	chr11	49023823	49043155
TRIM49B_chr11_49023823_49043155	0/0	c0004	1359	7	7	0	0	0	0	copy fasta	TRIM49B	chr11	49023823	49043155
TRIM49B_chr11_49023823_49043155	0/0	c0005	1359	5	5	0	0	0	0	copy fasta	TRIM49B	chr11	49023823	49043155
TRIM49B_chr11_49023823_49043155	0/0	c0006	1359	3	3	0	0	0	0	copy fasta	TRIM49B	chr11	49023823	49043155
TRIM49B_chr11_49023823_49043155	0/0	c0007	1359	3	3	0	0	0	0	copy fasta	TRIM49B	chr11	49023823	49043155
TRIM49B_chr11_49023823_49043155	0/0	c0008	1359	2	0	0	2	0	0	copy fasta	TRIM49B	chr11	49023823	49043155
TRIM49B_chr11_49023823_49043155	0/0	c0009	1359	1	1	0	0	0	0	copy fasta	TRIM49B	chr11	49023823	49043155
TRIM49B_chr11_49023823_49043155	0/0	c0010	1359	1	0	0	0	1	0	copy fasta	TRIM49B	chr11	49023823	49043155
TRIM49B_chr11_49023823_49043155	0/0	c0011	1359	1	1	0	0	0	0	copy fasta	TRIM49B	chr11	49023823	49043155
TRIM49B_chr11_49023823_49043155	0/0	c0012	1359	1	0	0	1	0	0	copy fasta	TRIM49B	chr11	49023823	49043155
TRIM49B_chr11_49023823_49043155	0/0	c0013	1359	1	1	0	0	0	0	copy fasta	TRIM49B	chr11	49023823	49043155
TRIM49C_chr11_90026106_90047025	1/1	c0001	1359	97	6	13	60	7	9	copy fasta	TRIM49C	chr11	90026106	90047025
TRIM49C_chr11_90026106_90047025	0/0	c0002	1359	10	2	2	3	0	3	copy fasta	TRIM49C	chr11	90026106	90047025
TRIM49C_chr11_90026106_90047025	0/0	c0003	1359	7	0	4	0	1	2	copy fasta	TRIM49C	chr11	90026106	90047025
TRIM49C_chr11_90026106_90047025	0/0	c0004	1359	3	0	3	0	0	0	copy fasta	TRIM49C	chr11	90026106	90047025
TRIM49C_chr11_90026106_90047025	0/0	c0005	1359	1	0	1	0	0	0	copy fasta	TRIM49C	chr11	90026106	90047025
TRIM49C_chr11_90026106_90047025	0/0	c0006	1359	1	0	1	0	0	0	copy fasta	TRIM49C	chr11	90026106	90047025
TRIM49C_chr11_90026106_90047025	0/0	c0007	1359	1	0	0	1	0	0	copy fasta	TRIM49C	chr11	90026106	90047025
TRIM49D1_chr11_89906409_89927245	0/0	c0001	1359	92	23	17	40	2	10	copy fasta	TRIM49D1	chr11	89906409	89927245
TRIM49D1_chr11_89906409_89927245	1/1	c0002	1359	70	19	17	20	2	10	copy fasta	TRIM49D1	chr11	89906409	89927245
TRIM49D1_chr11_89906409_89927245	0/0	c0003	1359	20	1	8	9	2	0	copy fasta	TRIM49D1	chr11	89906409	89927245
TRIM49D1_chr11_89906409_89927245	0/0	c0004	1359	11	0	0	11	0	0	copy fasta	TRIM49D1	chr11	89906409	89927245
TRIM49D1_chr11_89906409_89927245	0/0	c0005	1359	5	5	0	0	0	0	copy fasta	TRIM49D1	chr11	89906409	89927245
TRIM49D1_chr11_89906409_89927245	0/0	c0006	1359	2	2	0	0	0	0	copy fasta	TRIM49D1	chr11	89906409	89927245
TRIM49D1_chr11_89906409_89927245	0/0	c0007	1359	2	2	0	0	0	0	copy fasta	TRIM49D1	chr11	89906409	89927245
TRIM49D1_chr11_89906409_89927245	0/0	c0008	1359	1	0	0	1	0	0	copy fasta	TRIM49D1	chr11	89906409	89927245
TRIM49D1_chr11_89906409_89927245	0/0	c0009	1359	1	0	1	0	0	0	copy fasta	TRIM49D1	chr11	89906409	89927245
TRIM49D1_chr11_89906409_89927245	0/0	c0010	1359	1	0	0	1	0	0	copy fasta	TRIM49D1	chr11	89906409	89927245
TRIM49D1_chr11_89906409_89927245	0/0	c0011	1359	1	0	1	0	0	0	copy fasta	TRIM49D1	chr11	89906409	89927245
TRIM49D1_chr11_89906409_89927245	0/0	c0012	1359	1	1	0	0	0	0	copy fasta	TRIM49D1	chr11	89906409	89927245
TRIM49D1_chr11_89906409_89927245	0/0	c0013	1359	1	1	0	0	0	0	copy fasta	TRIM49D1	chr11	89906409	89927245
TRIM49D2_chr11_89919064_89938063	0/0	c0001	1359	119	22	22	57	3	15	copy fasta	TRIM49D2	chr11	89919064	89938063
TRIM49D2_chr11_89919064_89938063	0/0	c0002	1359	86	31	15	28	5	7	copy fasta	TRIM49D2	chr11	89919064	89938063
TRIM49D2_chr11_89919064_89938063	0/0	c0003	1359	24	0	10	12	2	0	copy fasta	TRIM49D2	chr11	89919064	89938063
TRIM49D2_chr11_89919064_89938063	0/0	c0004	1359	7	6	1	0	0	0	copy fasta	TRIM49D2	chr11	89919064	89938063
TRIM49D2_chr11_89919064_89938063	0/0	c0005	1359	6	0	0	5	0	1	copy fasta	TRIM49D2	chr11	89919064	89938063
TRIM49D2_chr11_89919064_89938063	0/0	c0006	1359	2	2	0	0	0	0	copy fasta	TRIM49D2	chr11	89919064	89938063
TRIM49D2_chr11_89919064_89938063	0/0	c0007	1359	2	1	1	0	0	0	copy fasta	TRIM49D2	chr11	89919064	89938063
TRIM49D2_chr11_89919064_89938063	0/0	c0008	1359	1	0	0	0	0	1	copy fasta	TRIM49D2	chr11	89919064	89938063
TRIM49D2_chr11_89919064_89938063	0/0	c0009	1359	1	1	0	0	0	0	copy fasta	TRIM49D2	chr11	89919064	89938063
TRIM49D2_chr11_89919064_89938063	0/0	c0010	1359	1	1	0	0	0	0	copy fasta	TRIM49D2	chr11	89919064	89938063
TRIM49D2_chr11_89919064_89938063	0/0	c0011	1359	1	0	0	1	0	0	copy fasta	TRIM49D2	chr11	89919064	89938063
TRIM49D2_chr11_89919064_89938063	0/0	c0012	1359	1	0	1	0	0	0	copy fasta	TRIM49D2	chr11	89919064	89938063
TRIM49D2_chr11_89919064_89938063	0/0	c0013	1359	1	0	0	1	0	0	copy fasta	TRIM49D2	chr11	89919064	89938063
TRIM49D2_chr11_89919064_89938063	0/0	c0014	1359	1	0	0	1	0	0	copy fasta	TRIM49D2	chr11	89919064	89938063
TRIM49D2_chr11_89919064_89938063	0/0	c0015	1359	1	0	0	1	0	0	copy fasta	TRIM49D2	chr11	89919064	89938063
TRIM49D2_chr11_89919064_89938063	0/0	c0016	1359	1	1	0	0	0	0	copy fasta	TRIM49D2	chr11	89919064	89938063
TRIM49D2_chr11_89919064_89938063	0/0	c0017	1359	1	1	0	0	0	0	copy fasta	TRIM49D2	chr11	89919064	89938063
TRIM49_chr11_89792655_89813575	0/0	c0001	1359	69	2	16	37	6	8	copy fasta	TRIM49	chr11	89792655	89813575
TRIM49_chr11_89792655_89813575	1/0	c0002	1359	65	6	14	27	5	12	copy fasta	TRIM49	chr11	89792655	89813575