JoGo: Joint Open Genome and Omics Platform

Search by Genic region

geneid	642612
ensemblid	ENSG00000204449.3
hgncid	38877
symbol	TRIM49C
name	tripartite motif containing 49C
refseq_nuc	NM_001195234.1
refseq_prot	NP_001182163.1
ensembl_nuc	ENST00000448984.1
ensembl_prot	ENSP00000388299.1
mane_status	MANE Select
chr	chr11
start	90031106
end	90042025
strand	+
ver	v1.2
region	chr11:90031106-90042025
region5000	chr11:90026106-90047025
regionname0	TRIM49C_chr11_90031106_90042025
regionname5000	TRIM49C_chr11_90026106_90047025

ahapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	alen	total	AFR	AMR	EAS	EUR	SAS	JPT	regionname	genename	aa	chr	start	end
a0001	1/1	452	104	6	17	60	8	11	45	TRIM49C_chr11_90026106_90047025	TRIM49C	copy fasta	chr11	90026106	90047025
a0002	0/0	452	10	2	2	3	0	3	1	TRIM49C_chr11_90026106_90047025	TRIM49C	copy fasta	chr11	90026106	90047025
a0003	0/0	452	3	0	3	0	0	0	0	TRIM49C_chr11_90026106_90047025	TRIM49C	copy fasta	chr11	90026106	90047025
a0004	0/0	452	1	0	1	0	0	0	0	TRIM49C_chr11_90026106_90047025	TRIM49C	copy fasta	chr11	90026106	90047025
a0005	0/0	452	1	0	1	0	0	0	0	TRIM49C_chr11_90026106_90047025	TRIM49C	copy fasta	chr11	90026106	90047025
a0006	0/0	452	1	0	0	1	0	0	0	TRIM49C_chr11_90026106_90047025	TRIM49C	copy fasta	chr11	90026106	90047025

chapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	clen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	cseq	chr	start	end
c0001	1/1	1359	97	6	13	60	7	9	TRIM49C_chr11_90026106_90047025	TRIM49C	copy fasta	chr11	90026106	90047025
c0002	0/0	1359	10	2	2	3	0	3	TRIM49C_chr11_90026106_90047025	TRIM49C	copy fasta	chr11	90026106	90047025
c0003	0/0	1359	7	0	4	0	1	2	TRIM49C_chr11_90026106_90047025	TRIM49C	copy fasta	chr11	90026106	90047025
c0004	0/0	1359	3	0	3	0	0	0	TRIM49C_chr11_90026106_90047025	TRIM49C	copy fasta	chr11	90026106	90047025
c0005	0/0	1359	1	0	1	0	0	0	TRIM49C_chr11_90026106_90047025	TRIM49C	copy fasta	chr11	90026106	90047025
c0006	0/0	1359	1	0	1	0	0	0	TRIM49C_chr11_90026106_90047025	TRIM49C	copy fasta	chr11	90026106	90047025
c0007	0/0	1359	1	0	0	1	0	0	TRIM49C_chr11_90026106_90047025	TRIM49C	copy fasta	chr11	90026106	90047025

thapid	grch38 chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	tlen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	tseq	chr	start	end
t0001	1/1	805	106	6	20	59	8	11	TRIM49C_chr11_90026106_90047025	TRIM49C	copy fasta	chr11	90026106	90047025
t0002	0/0	805	9	2	1	3	0	3	TRIM49C_chr11_90026106_90047025	TRIM49C	copy fasta	chr11	90026106	90047025
t0003	0/0	805	1	0	1	0	0	0	TRIM49C_chr11_90026106_90047025	TRIM49C	copy fasta	chr11	90026106	90047025
t0004	0/0	805	1	0	1	0	0	0	TRIM49C_chr11_90026106_90047025	TRIM49C	copy fasta	chr11	90026106	90047025
t0005	0/0	805	1	0	0	1	0	0	TRIM49C_chr11_90026106_90047025	TRIM49C	copy fasta	chr11	90026106	90047025
t0006	0/0	805	1	0	0	1	0	0	TRIM49C_chr11_90026106_90047025	TRIM49C	copy fasta	chr11	90026106	90047025
t0007	0/0	805	1	0	1	0	0	0	TRIM49C_chr11_90026106_90047025	TRIM49C	copy fasta	chr11	90026106	90047025

ghapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	chr	start	end
g0001	0/1	38	4	6	18	6	3	TRIM49C_chr11_90026106_90047025	TRIM49C	chr11	90026106	90047025
g0002	0/0	19	0	2	16	0	1	TRIM49C_chr11_90026106_90047025	TRIM49C	chr11	90026106	90047025
g0003	0/0	15	1	6	6	1	1	TRIM49C_chr11_90026106_90047025	TRIM49C	chr11	90026106	90047025
g0004	0/0	5	1	1	1	0	2	TRIM49C_chr11_90026106_90047025	TRIM49C	chr11	90026106	90047025
g0005	0/0	4	0	3	1	0	0	TRIM49C_chr11_90026106_90047025	TRIM49C	chr11	90026106	90047025
g0006	0/0	3	0	0	0	1	2	TRIM49C_chr11_90026106_90047025	TRIM49C	chr11	90026106	90047025
g0007	0/0	3	0	1	2	0	0	TRIM49C_chr11_90026106_90047025	TRIM49C	chr11	90026106	90047025
g0008	0/0	2	0	0	1	0	1	TRIM49C_chr11_90026106_90047025	TRIM49C	chr11	90026106	90047025
g0009	0/0	2	0	0	1	0	1	TRIM49C_chr11_90026106_90047025	TRIM49C	chr11	90026106	90047025
g0010	0/0	2	0	0	2	0	0	TRIM49C_chr11_90026106_90047025	TRIM49C	chr11	90026106	90047025
g0011	0/0	2	0	0	2	0	0	TRIM49C_chr11_90026106_90047025	TRIM49C	chr11	90026106	90047025
g0012	0/0	2	0	0	2	0	0	TRIM49C_chr11_90026106_90047025	TRIM49C	chr11	90026106	90047025
g0013	0/0	1	0	1	0	0	0	TRIM49C_chr11_90026106_90047025	TRIM49C	chr11	90026106	90047025
g0014	0/0	1	0	0	1	0	0	TRIM49C_chr11_90026106_90047025	TRIM49C	chr11	90026106	90047025
g0015	0/0	1	1	0	0	0	0	TRIM49C_chr11_90026106_90047025	TRIM49C	chr11	90026106	90047025
g0016	0/0	1	0	1	0	0	0	TRIM49C_chr11_90026106_90047025	TRIM49C	chr11	90026106	90047025
g0017	0/0	1	0	0	1	0	0	TRIM49C_chr11_90026106_90047025	TRIM49C	chr11	90026106	90047025
g0018	0/0	1	0	1	0	0	0	TRIM49C_chr11_90026106_90047025	TRIM49C	chr11	90026106	90047025
g0019	0/0	1	0	0	1	0	0	TRIM49C_chr11_90026106_90047025	TRIM49C	chr11	90026106	90047025
g0020	1/0	1	0	0	0	0	0	TRIM49C_chr11_90026106_90047025	TRIM49C	chr11	90026106	90047025
g0021	0/0	1	0	0	0	0	1	TRIM49C_chr11_90026106_90047025	TRIM49C	chr11	90026106	90047025
g0022	0/0	1	0	1	0	0	0	TRIM49C_chr11_90026106_90047025	TRIM49C	chr11	90026106	90047025
g0023	0/0	1	0	0	1	0	0	TRIM49C_chr11_90026106_90047025	TRIM49C	chr11	90026106	90047025
g0024	0/0	1	0	1	0	0	0	TRIM49C_chr11_90026106_90047025	TRIM49C	chr11	90026106	90047025
g0025	0/0	1	0	0	1	0	0	TRIM49C_chr11_90026106_90047025	TRIM49C	chr11	90026106	90047025
g0026	0/0	1	0	0	1	0	0	TRIM49C_chr11_90026106_90047025	TRIM49C	chr11	90026106	90047025
g0027	0/0	1	0	0	1	0	0	TRIM49C_chr11_90026106_90047025	TRIM49C	chr11	90026106	90047025
g0028	0/0	1	0	0	1	0	0	TRIM49C_chr11_90026106_90047025	TRIM49C	chr11	90026106	90047025
g0029	0/0	1	1	0	0	0	0	TRIM49C_chr11_90026106_90047025	TRIM49C	chr11	90026106	90047025
g0030	0/0	1	0	0	0	0	1	TRIM49C_chr11_90026106_90047025	TRIM49C	chr11	90026106	90047025
g0031	0/0	1	0	0	1	0	0	TRIM49C_chr11_90026106_90047025	TRIM49C	chr11	90026106	90047025
g0032	0/0	1	0	0	1	0	0	TRIM49C_chr11_90026106_90047025	TRIM49C	chr11	90026106	90047025
g0033	0/0	1	0	0	1	0	0	TRIM49C_chr11_90026106_90047025	TRIM49C	chr11	90026106	90047025
g0034	0/0	1	0	0	0	0	1	TRIM49C_chr11_90026106_90047025	TRIM49C	chr11	90026106	90047025
g0035	0/0	1	0	0	1	0	0	TRIM49C_chr11_90026106_90047025	TRIM49C	chr11	90026106	90047025

achapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	clen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	cseq	chr	start	end
a0001c0001	1/1	1359	97	6	13	60	7	9	TRIM49C_chr11_90026106_90047025	TRIM49C	copy fasta	chr11	90026106	90047025
a0001c0003	0/0	1359	7	0	4	0	1	2	TRIM49C_chr11_90026106_90047025	TRIM49C	copy fasta	chr11	90026106	90047025
a0002c0002	0/0	1359	10	2	2	3	0	3	TRIM49C_chr11_90026106_90047025	TRIM49C	copy fasta	chr11	90026106	90047025
a0003c0004	0/0	1359	3	0	3	0	0	0	TRIM49C_chr11_90026106_90047025	TRIM49C	copy fasta	chr11	90026106	90047025
a0004c0006	0/0	1359	1	0	1	0	0	0	TRIM49C_chr11_90026106_90047025	TRIM49C	copy fasta	chr11	90026106	90047025
a0005c0005	0/0	1359	1	0	1	0	0	0	TRIM49C_chr11_90026106_90047025	TRIM49C	copy fasta	chr11	90026106	90047025
a0006c0007	0/0	1359	1	0	0	1	0	0	TRIM49C_chr11_90026106_90047025	TRIM49C	copy fasta	chr11	90026106	90047025

acthapid	grch38 chm13v2	tlen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	tseq	chr	start	end
a0001c0001t0001	1/1	2163	95	6	13	58	7	9	TRIM49C_chr11_90026106_90047025	TRIM49C	copy fasta	chr11	90026106	90047025
a0001c0001t0005	0/0	2163	1	0	0	1	0	0	TRIM49C_chr11_90026106_90047025	TRIM49C	copy fasta	chr11	90026106	90047025
a0001c0001t0006	0/0	2163	1	0	0	1	0	0	TRIM49C_chr11_90026106_90047025	TRIM49C	copy fasta	chr11	90026106	90047025
a0001c0003t0001	0/0	2163	6	0	3	0	1	2	TRIM49C_chr11_90026106_90047025	TRIM49C	copy fasta	chr11	90026106	90047025
a0001c0003t0004	0/0	2163	1	0	1	0	0	0	TRIM49C_chr11_90026106_90047025	TRIM49C	copy fasta	chr11	90026106	90047025
a0002c0002t0002	0/0	2163	9	2	1	3	0	3	TRIM49C_chr11_90026106_90047025	TRIM49C	copy fasta	chr11	90026106	90047025
a0002c0002t0007	0/0	2163	1	0	1	0	0	0	TRIM49C_chr11_90026106_90047025	TRIM49C	copy fasta	chr11	90026106	90047025
a0003c0004t0001	0/0	2163	3	0	3	0	0	0	TRIM49C_chr11_90026106_90047025	TRIM49C	copy fasta	chr11	90026106	90047025
a0004c0006t0003	0/0	2163	1	0	1	0	0	0	TRIM49C_chr11_90026106_90047025	TRIM49C	copy fasta	chr11	90026106	90047025
a0005c0005t0001	0/0	2163	1	0	1	0	0	0	TRIM49C_chr11_90026106_90047025	TRIM49C	copy fasta	chr11	90026106	90047025
a0006c0007t0001	0/0	2163	1	0	0	1	0	0	TRIM49C_chr11_90026106_90047025	TRIM49C	copy fasta	chr11	90026106	90047025

actghapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	chr	start	end
a0001c0001t0001g0001	0/1	38	4	6	18	6	3	TRIM49C_chr11_90026106_90047025	TRIM49C	chr11	90026106	90047025
a0001c0001t0001g0002	0/0	17	0	2	14	0	1	TRIM49C_chr11_90026106_90047025	TRIM49C	chr11	90026106	90047025
a0001c0001t0001g0003	0/0	9	1	2	6	0	0	TRIM49C_chr11_90026106_90047025	TRIM49C	chr11	90026106	90047025
a0001c0001t0001g0005	0/0	1	0	0	1	0	0	TRIM49C_chr11_90026106_90047025	TRIM49C	chr11	90026106	90047025
a0001c0001t0001g0006	0/0	3	0	0	0	1	2	TRIM49C_chr11_90026106_90047025	TRIM49C	chr11	90026106	90047025
a0001c0001t0001g0007	0/0	2	0	1	1	0	0	TRIM49C_chr11_90026106_90047025	TRIM49C	chr11	90026106	90047025
a0001c0001t0001g0008	0/0	2	0	0	1	0	1	TRIM49C_chr11_90026106_90047025	TRIM49C	chr11	90026106	90047025
a0001c0001t0001g0010	0/0	2	0	0	2	0	0	TRIM49C_chr11_90026106_90047025	TRIM49C	chr11	90026106	90047025
a0001c0001t0001g0011	0/0	2	0	0	2	0	0	TRIM49C_chr11_90026106_90047025	TRIM49C	chr11	90026106	90047025
a0001c0001t0001g0012	0/0	2	0	0	2	0	0	TRIM49C_chr11_90026106_90047025	TRIM49C	chr11	90026106	90047025
a0001c0001t0001g0017	0/0	1	0	0	1	0	0	TRIM49C_chr11_90026106_90047025	TRIM49C	chr11	90026106	90047025
a0001c0001t0001g0018	0/0	1	0	1	0	0	0	TRIM49C_chr11_90026106_90047025	TRIM49C	chr11	90026106	90047025
a0001c0001t0001g0019	0/0	1	0	0	1	0	0	TRIM49C_chr11_90026106_90047025	TRIM49C	chr11	90026106	90047025
a0001c0001t0001g0020	1/0	1	0	0	0	0	0	TRIM49C_chr11_90026106_90047025	TRIM49C	chr11	90026106	90047025
a0001c0001t0001g0023	0/0	1	0	0	1	0	0	TRIM49C_chr11_90026106_90047025	TRIM49C	chr11	90026106	90047025
a0001c0001t0001g0024	0/0	1	0	1	0	0	0	TRIM49C_chr11_90026106_90047025	TRIM49C	chr11	90026106	90047025
a0001c0001t0001g0025	0/0	1	0	0	1	0	0	TRIM49C_chr11_90026106_90047025	TRIM49C	chr11	90026106	90047025
a0001c0001t0001g0026	0/0	1	0	0	1	0	0	TRIM49C_chr11_90026106_90047025	TRIM49C	chr11	90026106	90047025
a0001c0001t0001g0027	0/0	1	0	0	1	0	0	TRIM49C_chr11_90026106_90047025	TRIM49C	chr11	90026106	90047025
a0001c0001t0001g0028	0/0	1	0	0	1	0	0	TRIM49C_chr11_90026106_90047025	TRIM49C	chr11	90026106	90047025
a0001c0001t0001g0029	0/0	1	1	0	0	0	0	TRIM49C_chr11_90026106_90047025	TRIM49C	chr11	90026106	90047025
a0001c0001t0001g0030	0/0	1	0	0	0	0	1	TRIM49C_chr11_90026106_90047025	TRIM49C	chr11	90026106	90047025
a0001c0001t0001g0031	0/0	1	0	0	1	0	0	TRIM49C_chr11_90026106_90047025	TRIM49C	chr11	90026106	90047025
a0001c0001t0001g0032	0/0	1	0	0	1	0	0	TRIM49C_chr11_90026106_90047025	TRIM49C	chr11	90026106	90047025
a0001c0001t0001g0033	0/0	1	0	0	1	0	0	TRIM49C_chr11_90026106_90047025	TRIM49C	chr11	90026106	90047025
a0001c0001t0001g0034	0/0	1	0	0	0	0	1	TRIM49C_chr11_90026106_90047025	TRIM49C	chr11	90026106	90047025
a0001c0001t0001g0035	0/0	1	0	0	1	0	0	TRIM49C_chr11_90026106_90047025	TRIM49C	chr11	90026106	90047025
a0001c0001t0005g0002	0/0	1	0	0	1	0	0	TRIM49C_chr11_90026106_90047025	TRIM49C	chr11	90026106	90047025
a0001c0001t0006g0002	0/0	1	0	0	1	0	0	TRIM49C_chr11_90026106_90047025	TRIM49C	chr11	90026106	90047025
a0001c0003t0001g0003	0/0	5	0	3	0	1	1	TRIM49C_chr11_90026106_90047025	TRIM49C	chr11	90026106	90047025
a0001c0003t0001g0021	0/0	1	0	0	0	0	1	TRIM49C_chr11_90026106_90047025	TRIM49C	chr11	90026106	90047025
a0001c0003t0004g0003	0/0	1	0	1	0	0	0	TRIM49C_chr11_90026106_90047025	TRIM49C	chr11	90026106	90047025
a0002c0002t0002g0004	0/0	4	1	0	1	0	2	TRIM49C_chr11_90026106_90047025	TRIM49C	chr11	90026106	90047025
a0002c0002t0002g0009	0/0	2	0	0	1	0	1	TRIM49C_chr11_90026106_90047025	TRIM49C	chr11	90026106	90047025
a0002c0002t0002g0014	0/0	1	0	0	1	0	0	TRIM49C_chr11_90026106_90047025	TRIM49C	chr11	90026106	90047025
a0002c0002t0002g0015	0/0	1	1	0	0	0	0	TRIM49C_chr11_90026106_90047025	TRIM49C	chr11	90026106	90047025
a0002c0002t0002g0016	0/0	1	0	1	0	0	0	TRIM49C_chr11_90026106_90047025	TRIM49C	chr11	90026106	90047025
a0002c0002t0007g0004	0/0	1	0	1	0	0	0	TRIM49C_chr11_90026106_90047025	TRIM49C	chr11	90026106	90047025
a0003c0004t0001g0005	0/0	3	0	3	0	0	0	TRIM49C_chr11_90026106_90047025	TRIM49C	chr11	90026106	90047025
a0004c0006t0003g0013	0/0	1	0	1	0	0	0	TRIM49C_chr11_90026106_90047025	TRIM49C	chr11	90026106	90047025
a0005c0005t0001g0022	0/0	1	0	1	0	0	0	TRIM49C_chr11_90026106_90047025	TRIM49C	chr11	90026106	90047025
a0006c0007t0001g0007	0/0	1	0	0	1	0	0	TRIM49C_chr11_90026106_90047025	TRIM49C	chr11	90026106	90047025

sampleid	ID haplotypeid	ahapid	chapid	thapid	ghapid	gpopname	popname	regionname	genename	chr	start	end
HG00099	hp1	a0001	c0001	t0001	g0001	EUR	GBR	TRIM49C_chr11_90026106_90047025	TRIM49C	chr11	90026106	90047025
HG00099	hp2	a0001	c0003	t0001	g0003	EUR	GBR	TRIM49C_chr11_90026106_90047025	TRIM49C	chr11	90026106	90047025
HG00280	hp1	a0001	c0001	t0001	g0006	EUR	FIN	TRIM49C_chr11_90026106_90047025	TRIM49C	chr11	90026106	90047025
HG00280	hp2	a0001	c0001	t0001	g0001	EUR	FIN	TRIM49C_chr11_90026106_90047025	TRIM49C	chr11	90026106	90047025
HG00408	hp1	a0001	c0001	t0001	g0027	EAS	CHS	TRIM49C_chr11_90026106_90047025	TRIM49C	chr11	90026106	90047025
HG00408	hp2	a0001	c0001	t0005	g0002	EAS	CHS	TRIM49C_chr11_90026106_90047025	TRIM49C	chr11	90026106	90047025
HG00544	hp1	a0001	c0001	t0001	g0002	EAS	CHS	TRIM49C_chr11_90026106_90047025	TRIM49C	chr11	90026106	90047025
HG00544	hp2	a0001	c0001	t0001	g0002	EAS	CHS	TRIM49C_chr11_90026106_90047025	TRIM49C	chr11	90026106	90047025
HG00639	hp1	a0001	c0001	t0001	g0002	AMR	PUR	TRIM49C_chr11_90026106_90047025	TRIM49C	chr11	90026106	90047025
HG00639	hp2	a0004	c0006	t0003	g0013	AMR	PUR	TRIM49C_chr11_90026106_90047025	TRIM49C	chr11	90026106	90047025
HG00733	hp1	a0001	c0003	t0001	g0003	AMR	PUR	TRIM49C_chr11_90026106_90047025	TRIM49C	chr11	90026106	90047025
HG00733	hp2	a0001	c0001	t0001	g0003	AMR	PUR	TRIM49C_chr11_90026106_90047025	TRIM49C	chr11	90026106	90047025
HG00735	hp1	a0001	c0003	t0001	g0003	AMR	PUR	TRIM49C_chr11_90026106_90047025	TRIM49C	chr11	90026106	90047025
HG00735	hp2	a0001	c0001	t0001	g0001	AMR	PUR	TRIM49C_chr11_90026106_90047025	TRIM49C	chr11	90026106	90047025
HG00738	hp1	a0001	c0001	t0001	g0007	AMR	PUR	TRIM49C_chr11_90026106_90047025	TRIM49C	chr11	90026106	90047025
HG00738	hp2	a0005	c0005	t0001	g0022	AMR	PUR	TRIM49C_chr11_90026106_90047025	TRIM49C	chr11	90026106	90047025
HG00741	hp1	a0001	c0001	t0001	g0001	AMR	PUR	TRIM49C_chr11_90026106_90047025	TRIM49C	chr11	90026106	90047025
HG00741	hp2	a0001	c0003	t0004	g0003	AMR	PUR	TRIM49C_chr11_90026106_90047025	TRIM49C	chr11	90026106	90047025
HG01071	hp1	a0001	c0001	t0001	g0024	AMR	PUR	TRIM49C_chr11_90026106_90047025	TRIM49C	chr11	90026106	90047025
HG01071	hp2	a0001	c0003	t0001	g0003	AMR	PUR	TRIM49C_chr11_90026106_90047025	TRIM49C	chr11	90026106	90047025
HG01099	hp1	a0001	c0001	t0001	g0001	AMR	PUR	TRIM49C_chr11_90026106_90047025	TRIM49C	chr11	90026106	90047025
HG01099	hp2	a0002	c0002	t0007	g0004	AMR	PUR	TRIM49C_chr11_90026106_90047025	TRIM49C	chr11	90026106	90047025
HG01167	hp1	a0001	c0001	t0001	g0002	AMR	PUR	TRIM49C_chr11_90026106_90047025	TRIM49C	chr11	90026106	90047025
HG01167	hp2	a0001	c0001	t0001	g0001	AMR	PUR	TRIM49C_chr11_90026106_90047025	TRIM49C	chr11	90026106	90047025
HG01192	hp1	a0003	c0004	t0001	g0005	AMR	PUR	TRIM49C_chr11_90026106_90047025	TRIM49C	chr11	90026106	90047025
HG01192	hp2	a0002	c0002	t0002	g0016	AMR	PUR	TRIM49C_chr11_90026106_90047025	TRIM49C	chr11	90026106	90047025
HG01258	hp1	a0001	c0001	t0001	g0001	AMR	CLM	TRIM49C_chr11_90026106_90047025	TRIM49C	chr11	90026106	90047025
HG01258	hp2	a0001	c0001	t0001	g0003	AMR	CLM	TRIM49C_chr11_90026106_90047025	TRIM49C	chr11	90026106	90047025
HG01515	hp1	a0001	c0001	t0001	g0001	EUR	IBS	TRIM49C_chr11_90026106_90047025	TRIM49C	chr11	90026106	90047025
HG01515	hp2	a0001	c0001	t0001	g0001	EUR	IBS	TRIM49C_chr11_90026106_90047025	TRIM49C	chr11	90026106	90047025
HG02004	hp1	a0003	c0004	t0001	g0005	AMR	PEL	TRIM49C_chr11_90026106_90047025	TRIM49C	chr11	90026106	90047025
HG02004	hp2	a0001	c0001	t0001	g0018	AMR	PEL	TRIM49C_chr11_90026106_90047025	TRIM49C	chr11	90026106	90047025
HG02056	hp1	a0001	c0001	t0001	g0017	EAS	KHV	TRIM49C_chr11_90026106_90047025	TRIM49C	chr11	90026106	90047025
HG02056	hp2	a0002	c0002	t0002	g0014	EAS	KHV	TRIM49C_chr11_90026106_90047025	TRIM49C	chr11	90026106	90047025
HG02071	hp1	a0001	c0001	t0001	g0002	EAS	KHV	TRIM49C_chr11_90026106_90047025	TRIM49C	chr11	90026106	90047025
HG02071	hp2	a0001	c0001	t0001	g0031	EAS	KHV	TRIM49C_chr11_90026106_90047025	TRIM49C	chr11	90026106	90047025
HG02074	hp1	a0001	c0001	t0001	g0001	EAS	KHV	TRIM49C_chr11_90026106_90047025	TRIM49C	chr11	90026106	90047025
HG02074	hp2	a0002	c0002	t0002	g0009	EAS	KHV	TRIM49C_chr11_90026106_90047025	TRIM49C	chr11	90026106	90047025
HG02080	hp1	a0001	c0001	t0001	g0001	EAS	KHV	TRIM49C_chr11_90026106_90047025	TRIM49C	chr11	90026106	90047025
HG02080	hp2	a0001	c0001	t0001	g0002	EAS	KHV	TRIM49C_chr11_90026106_90047025	TRIM49C	chr11	90026106	90047025
HG02132	hp1	a0001	c0001	t0001	g0032	EAS	KHV	TRIM49C_chr11_90026106_90047025	TRIM49C	chr11	90026106	90047025
HG02132	hp2	a0001	c0001	t0001	g0025	EAS	KHV	TRIM49C_chr11_90026106_90047025	TRIM49C	chr11	90026106	90047025
HG02135	hp1	a0001	c0001	t0001	g0010	EAS	KHV	TRIM49C_chr11_90026106_90047025	TRIM49C	chr11	90026106	90047025
HG02135	hp2	a0001	c0001	t0001	g0002	EAS	KHV	TRIM49C_chr11_90026106_90047025	TRIM49C	chr11	90026106	90047025
HG02145	hp1	a0002	c0002	t0002	g0015	AFR	ACB	TRIM49C_chr11_90026106_90047025	TRIM49C	chr11	90026106	90047025
HG02145	hp2	a0001	c0001	t0001	g0001	AFR	ACB	TRIM49C_chr11_90026106_90047025	TRIM49C	chr11	90026106	90047025
HG02683	hp1	a0001	c0001	t0001	g0001	SAS	PJL	TRIM49C_chr11_90026106_90047025	TRIM49C	chr11	90026106	90047025
HG02683	hp2	a0002	c0002	t0002	g0004	SAS	PJL	TRIM49C_chr11_90026106_90047025	TRIM49C	chr11	90026106	90047025
HG03209	hp1	a0001	c0001	t0001	g0003	AFR	MSL	TRIM49C_chr11_90026106_90047025	TRIM49C	chr11	90026106	90047025
HG03209	hp2	a0002	c0002	t0002	g0004	AFR	MSL	TRIM49C_chr11_90026106_90047025	TRIM49C	chr11	90026106	90047025
HG03490	hp1	a0001	c0001	t0001	g0006	SAS	PJL	TRIM49C_chr11_90026106_90047025	TRIM49C	chr11	90026106	90047025
HG03490	hp2	a0001	c0003	t0001	g0021	SAS	PJL	TRIM49C_chr11_90026106_90047025	TRIM49C	chr11	90026106	90047025
HG03492	hp1	a0001	c0003	t0001	g0003	SAS	PJL	TRIM49C_chr11_90026106_90047025	TRIM49C	chr11	90026106	90047025
HG03492	hp2	a0001	c0001	t0001	g0006	SAS	PJL	TRIM49C_chr11_90026106_90047025	TRIM49C	chr11	90026106	90047025
HG03704	hp1	a0002	c0002	t0002	g0009	SAS	PJL	TRIM49C_chr11_90026106_90047025	TRIM49C	chr11	90026106	90047025
HG03704	hp2	a0001	c0001	t0001	g0030	SAS	PJL	TRIM49C_chr11_90026106_90047025	TRIM49C	chr11	90026106	90047025
HG03710	hp1	a0002	c0002	t0002	g0004	SAS	PJL	TRIM49C_chr11_90026106_90047025	TRIM49C	chr11	90026106	90047025
HG03710	hp2	a0001	c0001	t0001	g0001	SAS	PJL	TRIM49C_chr11_90026106_90047025	TRIM49C	chr11	90026106	90047025
HG03927	hp1	a0001	c0001	t0001	g0008	SAS	BEB	TRIM49C_chr11_90026106_90047025	TRIM49C	chr11	90026106	90047025
HG03927	hp2	a0001	c0001	t0001	g0001	SAS	BEB	TRIM49C_chr11_90026106_90047025	TRIM49C	chr11	90026106	90047025
HG04199	hp1	a0001	c0001	t0001	g0002	SAS	STU	TRIM49C_chr11_90026106_90047025	TRIM49C	chr11	90026106	90047025
HG04199	hp2	a0001	c0001	t0001	g0034	SAS	STU	TRIM49C_chr11_90026106_90047025	TRIM49C	chr11	90026106	90047025
NA18612	hp1	a0006	c0007	t0001	g0007	EAS	CHB	TRIM49C_chr11_90026106_90047025	TRIM49C	chr11	90026106	90047025
NA18612	hp2	a0001	c0001	t0001	g0001	EAS	CHB	TRIM49C_chr11_90026106_90047025	TRIM49C	chr11	90026106	90047025
NA18939	hp1	a0001	c0001	t0001	g0035	EAS	JPT	TRIM49C_chr11_90026106_90047025	TRIM49C	chr11	90026106	90047025
NA18939	hp2	a0001	c0001	t0001	g0002	EAS	JPT	TRIM49C_chr11_90026106_90047025	TRIM49C	chr11	90026106	90047025
NA18944	hp1	a0001	c0001	t0001	g0026	EAS	JPT	TRIM49C_chr11_90026106_90047025	TRIM49C	chr11	90026106	90047025
NA18944	hp2	a0001	c0001	t0001	g0019	EAS	JPT	TRIM49C_chr11_90026106_90047025	TRIM49C	chr11	90026106	90047025
NA18947	hp1	a0001	c0001	t0001	g0001	EAS	JPT	TRIM49C_chr11_90026106_90047025	TRIM49C	chr11	90026106	90047025
NA18947	hp2	a0001	c0001	t0001	g0011	EAS	JPT	TRIM49C_chr11_90026106_90047025	TRIM49C	chr11	90026106	90047025
NA18949	hp1	a0001	c0001	t0001	g0002	EAS	JPT	TRIM49C_chr11_90026106_90047025	TRIM49C	chr11	90026106	90047025
NA18949	hp2	a0001	c0001	t0001	g0001	EAS	JPT	TRIM49C_chr11_90026106_90047025	TRIM49C	chr11	90026106	90047025
NA18959	hp1	a0001	c0001	t0001	g0008	EAS	JPT	TRIM49C_chr11_90026106_90047025	TRIM49C	chr11	90026106	90047025
NA18959	hp2	a0001	c0001	t0006	g0002	EAS	JPT	TRIM49C_chr11_90026106_90047025	TRIM49C	chr11	90026106	90047025
NA18961	hp1	a0001	c0001	t0001	g0012	EAS	JPT	TRIM49C_chr11_90026106_90047025	TRIM49C	chr11	90026106	90047025
NA18961	hp2	a0001	c0001	t0001	g0001	EAS	JPT	TRIM49C_chr11_90026106_90047025	TRIM49C	chr11	90026106	90047025
NA18963	hp1	a0001	c0001	t0001	g0002	EAS	JPT	TRIM49C_chr11_90026106_90047025	TRIM49C	chr11	90026106	90047025
NA18963	hp2	a0001	c0001	t0001	g0005	EAS	JPT	TRIM49C_chr11_90026106_90047025	TRIM49C	chr11	90026106	90047025
NA18965	hp1	a0001	c0001	t0001	g0001	EAS	JPT	TRIM49C_chr11_90026106_90047025	TRIM49C	chr11	90026106	90047025
NA18965	hp2	a0001	c0001	t0001	g0002	EAS	JPT	TRIM49C_chr11_90026106_90047025	TRIM49C	chr11	90026106	90047025
NA18971	hp1	a0001	c0001	t0001	g0001	EAS	JPT	TRIM49C_chr11_90026106_90047025	TRIM49C	chr11	90026106	90047025
NA18971	hp2	a0001	c0001	t0001	g0001	EAS	JPT	TRIM49C_chr11_90026106_90047025	TRIM49C	chr11	90026106	90047025
NA18980	hp1	a0001	c0001	t0001	g0002	EAS	JPT	TRIM49C_chr11_90026106_90047025	TRIM49C	chr11	90026106	90047025
NA18980	hp2	a0001	c0001	t0001	g0001	EAS	JPT	TRIM49C_chr11_90026106_90047025	TRIM49C	chr11	90026106	90047025
NA18981	hp1	a0001	c0001	t0001	g0001	EAS	JPT	TRIM49C_chr11_90026106_90047025	TRIM49C	chr11	90026106	90047025
NA18981	hp2	a0001	c0001	t0001	g0010	EAS	JPT	TRIM49C_chr11_90026106_90047025	TRIM49C	chr11	90026106	90047025
NA18993	hp1	a0001	c0001	t0001	g0002	EAS	JPT	TRIM49C_chr11_90026106_90047025	TRIM49C	chr11	90026106	90047025
NA18993	hp2	a0001	c0001	t0001	g0003	EAS	JPT	TRIM49C_chr11_90026106_90047025	TRIM49C	chr11	90026106	90047025
NA18994	hp1	a0001	c0001	t0001	g0011	EAS	JPT	TRIM49C_chr11_90026106_90047025	TRIM49C	chr11	90026106	90047025
NA18994	hp2	a0001	c0001	t0001	g0001	EAS	JPT	TRIM49C_chr11_90026106_90047025	TRIM49C	chr11	90026106	90047025
NA18997	hp1	a0001	c0001	t0001	g0003	EAS	JPT	TRIM49C_chr11_90026106_90047025	TRIM49C	chr11	90026106	90047025
NA18997	hp2	a0001	c0001	t0001	g0007	EAS	JPT	TRIM49C_chr11_90026106_90047025	TRIM49C	chr11	90026106	90047025
NA19030	hp1	a0001	c0001	t0001	g0001	AFR	LWK	TRIM49C_chr11_90026106_90047025	TRIM49C	chr11	90026106	90047025
NA19030	hp2	a0001	c0001	t0001	g0029	AFR	LWK	TRIM49C_chr11_90026106_90047025	TRIM49C	chr11	90026106	90047025
NA19054	hp1	a0001	c0001	t0001	g0001	EAS	JPT	TRIM49C_chr11_90026106_90047025	TRIM49C	chr11	90026106	90047025
NA19054	hp2	a0001	c0001	t0001	g0001	EAS	JPT	TRIM49C_chr11_90026106_90047025	TRIM49C	chr11	90026106	90047025
NA19059	hp1	a0001	c0001	t0001	g0033	EAS	JPT	TRIM49C_chr11_90026106_90047025	TRIM49C	chr11	90026106	90047025
NA19059	hp2	a0001	c0001	t0001	g0001	EAS	JPT	TRIM49C_chr11_90026106_90047025	TRIM49C	chr11	90026106	90047025
NA19065	hp1	a0001	c0001	t0001	g0003	EAS	JPT	TRIM49C_chr11_90026106_90047025	TRIM49C	chr11	90026106	90047025
NA19065	hp2	a0001	c0001	t0001	g0002	EAS	JPT	TRIM49C_chr11_90026106_90047025	TRIM49C	chr11	90026106	90047025
NA19066	hp1	a0001	c0001	t0001	g0001	EAS	JPT	TRIM49C_chr11_90026106_90047025	TRIM49C	chr11	90026106	90047025
NA19066	hp2	a0001	c0001	t0001	g0002	EAS	JPT	TRIM49C_chr11_90026106_90047025	TRIM49C	chr11	90026106	90047025
NA19070	hp1	a0001	c0001	t0001	g0003	EAS	JPT	TRIM49C_chr11_90026106_90047025	TRIM49C	chr11	90026106	90047025
NA19070	hp2	a0001	c0001	t0001	g0012	EAS	JPT	TRIM49C_chr11_90026106_90047025	TRIM49C	chr11	90026106	90047025
NA19078	hp1	a0001	c0001	t0001	g0003	EAS	JPT	TRIM49C_chr11_90026106_90047025	TRIM49C	chr11	90026106	90047025
NA19078	hp2	a0001	c0001	t0001	g0002	EAS	JPT	TRIM49C_chr11_90026106_90047025	TRIM49C	chr11	90026106	90047025
NA19087	hp1	a0002	c0002	t0002	g0004	EAS	JPT	TRIM49C_chr11_90026106_90047025	TRIM49C	chr11	90026106	90047025
NA19087	hp2	a0001	c0001	t0001	g0023	EAS	JPT	TRIM49C_chr11_90026106_90047025	TRIM49C	chr11	90026106	90047025
NA19088	hp1	a0001	c0001	t0001	g0003	EAS	JPT	TRIM49C_chr11_90026106_90047025	TRIM49C	chr11	90026106	90047025
NA19088	hp2	a0001	c0001	t0001	g0028	EAS	JPT	TRIM49C_chr11_90026106_90047025	TRIM49C	chr11	90026106	90047025
NA20129	hp1	a0001	c0001	t0001	g0001	AFR	ASW	TRIM49C_chr11_90026106_90047025	TRIM49C	chr11	90026106	90047025
NA20129	hp2	a0001	c0001	t0001	g0001	AFR	ASW	TRIM49C_chr11_90026106_90047025	TRIM49C	chr11	90026106	90047025
NA20752	hp1	a0001	c0001	t0001	g0001	EUR	TSI	TRIM49C_chr11_90026106_90047025	TRIM49C	chr11	90026106	90047025
NA20752	hp2	a0001	c0001	t0001	g0001	EUR	TSI	TRIM49C_chr11_90026106_90047025	TRIM49C	chr11	90026106	90047025
HG01123	hp1	a0003	c0004	t0001	g0005	AMR	CLM	TRIM49C_chr11_90026106_90047025	TRIM49C	chr11	90026106	90047025
HG01123	hp2	a0001	c0001	t0001	g0001	AMR	CLM	TRIM49C_chr11_90026106_90047025	TRIM49C	chr11	90026106	90047025
NA18955	hp1	a0001	c0001	t0001	g0001	EAS	JPT	TRIM49C_chr11_90026106_90047025	TRIM49C	chr11	90026106	90047025
NA18955	hp2	a0001	c0001	t0001	g0001	EAS	JPT	TRIM49C_chr11_90026106_90047025	TRIM49C	chr11	90026106	90047025
homoSapiens_chm13v2	hp1	a0001	c0001	t0001	g0001	REF	REF	TRIM49C_chr11_90026106_90047025	TRIM49C	chr11	90026106	90047025
homoSapiens_grch38	hp1	a0001	c0001	t0001	g0020	REF	REF	TRIM49C_chr11_90026106_90047025	TRIM49C	chr11	90026106	90047025

chr:pos	ref	alt	# # of ahapid:amino-acid(protein) level	ahapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	chr	pos
chr11:90035342	A A	G G	1	a0006 a0006	1	NA18612.hp1 NA18612.hp1	missense_variant	MODERATE	c.131A>G c.131A>G	p.Gln44Arg p.Gln44Arg	TRIM49C	ENSG00000204449.3	transcript	ENST00000448984.1	protein_coding	3/8	460/2163	131/1359	44/452	chr11	90035342
chr11:90035590	C C	T T	1	a0003 a0003	3	HG01123.hp1 HG01192.hp1 HG02004.hp1 HG01123.hp1 HG01192.hp1 HG02004.hp1	missense_variant	MODERATE	c.379C>T c.379C>T	p.Arg127Cys p.Arg127Cys	TRIM49C	ENSG00000204449.3	transcript	ENST00000448984.1	protein_coding	3/8	708/2163	379/1359	127/452	chr11	90035590
chr11:90041068	C C	G G	1	a0004 a0004	1	HG00639.hp2 HG00639.hp2	missense_variant	MODERATE	c.877C>G c.877C>G	p.His293Asp p.His293Asp	TRIM49C	ENSG00000204449.3	transcript	ENST00000448984.1	protein_coding	8/8	1206/2163	877/1359	293/452	chr11	90041068
chr11:90041084	G G	A A	1	a0005 a0005	1	HG00738.hp2 HG00738.hp2	missense_variant	MODERATE	c.893G>A c.893G>A	p.Ser298Asn p.Ser298Asn	TRIM49C	ENSG00000204449.3	transcript	ENST00000448984.1	protein_coding	8/8	1222/2163	893/1359	298/452	chr11	90041084
chr11:90041315	A A	C C	2	a0002 a0005 a0002 a0005	11	HG00738.hp2 HG01099.hp2 HG01192.hp2 others(8): Show HG00738.hp2 HG01099.hp2 HG01192.hp2 HG02056.hp2 HG02074.hp2 HG02145.hp1 HG02683.hp2 HG03209.hp2 HG03704.hp1 HG03710.hp1 NA19087.hp1	missense_variant	MODERATE	c.1124A>C c.1124A>C	p.Glu375Ala p.Glu375Ala	TRIM49C	ENSG00000204449.3	transcript	ENST00000448984.1	protein_coding	8/8	1453/2163	1124/1359	375/452	chr11	90041315
chr11:90041338	A A	G G	2	a0002 a0005 a0002 a0005	11	HG00738.hp2 HG01099.hp2 HG01192.hp2 others(8): Show HG00738.hp2 HG01099.hp2 HG01192.hp2 HG02056.hp2 HG02074.hp2 HG02145.hp1 HG02683.hp2 HG03209.hp2 HG03704.hp1 HG03710.hp1 NA19087.hp1	missense_variant	MODERATE	c.1147A>G c.1147A>G	p.Ile383Val p.Ile383Val	TRIM49C	ENSG00000204449.3	transcript	ENST00000448984.1	protein_coding	8/8	1476/2163	1147/1359	383/452	chr11	90041338

chr:pos	ref	alt	# # of chapid	chapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	chr	pos
chr11:90035388	A A	C C	1	a0004c0006 a0004c0006	1	HG00639.hp2 HG00639.hp2	synonymous_variant	LOW	c.177A>C c.177A>C	p.Thr59Thr p.Thr59Thr	TRIM49C	ENSG00000204449.3	transcript	ENST00000448984.1	protein_coding	3/8	506/2163	177/1359	59/452	chr11	90035388
chr11:90035409	C C	T T	1	a0001c0003 a0001c0003	7	HG00099.hp2 HG00733.hp1 HG00735.hp1 others(4): Show HG00099.hp2 HG00733.hp1 HG00735.hp1 HG00741.hp2 HG01071.hp2 HG03490.hp2 HG03492.hp1	synonymous_variant	LOW	c.198C>T c.198C>T	p.Thr66Thr p.Thr66Thr	TRIM49C	ENSG00000204449.3	transcript	ENST00000448984.1	protein_coding	3/8	527/2163	198/1359	66/452	chr11	90035409
chr11:90041229	T T	C C	1	a0004c0006 a0004c0006	1	HG00639.hp2 HG00639.hp2	synonymous_variant	LOW	c.1038T>C c.1038T>C	p.His346His p.His346His	TRIM49C	ENSG00000204449.3	transcript	ENST00000448984.1	protein_coding	8/8	1367/2163	1038/1359	346/452	chr11	90041229
chr11:90041280	G G	A A	3	a0002c0002 a0004c0006 a0005c0005 a0002c0002 a0004c0006 a0005c0005	12	HG00639.hp2 HG00738.hp2 HG01099.hp2 others(9): Show HG00639.hp2 HG00738.hp2 HG01099.hp2 HG01192.hp2 HG02056.hp2 HG02074.hp2 HG02145.hp1 HG02683.hp2 HG03209.hp2 HG03704.hp1 HG03710.hp1 NA19087.hp1	synonymous_variant	LOW	c.1089G>A c.1089G>A	p.Lys363Lys p.Lys363Lys	TRIM49C	ENSG00000204449.3	transcript	ENST00000448984.1	protein_coding	8/8	1418/2163	1089/1359	363/452	chr11	90041280

chr:pos	ref	alt	# # of thapid:transcript level	thapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	distance	chr	pos
chr11:90031195	G G	A A	1	a0004c0006t0003 a0004c0006t0003	1	HG00639.hp2 HG00639.hp2	5_prime_UTR_premature_start_codon_gain_variant	LOW	c.-240G>A c.-240G>A	TRIM49C	ENSG00000204449.3	transcript	ENST00000448984.1	protein_coding	1/8		chr11	90031195
chr11:90031233	C C	T T	1	a0004c0006t0003 a0004c0006t0003	1	HG00639.hp2 HG00639.hp2	5_prime_UTR_variant	MODIFIER	c.-202C>T c.-202C>T	TRIM49C	ENSG00000204449.3	transcript	ENST00000448984.1	protein_coding	1/8	3979	chr11	90031233
chr11:90032515	C C	T T	1	a0004c0006t0003 a0004c0006t0003	1	HG00639.hp2 HG00639.hp2	5_prime_UTR_variant	MODIFIER	c.-72C>T c.-72C>T	TRIM49C	ENSG00000204449.3	transcript	ENST00000448984.1	protein_coding	2/8	2697	chr11	90032515
chr11:90041633	A A	G G	2	a0002c0002t0002 a0002c0002t0007 a0002c0002t0002 a0002c0002t0007	10	HG01099.hp2 HG01192.hp2 HG02056.hp2 others(7): Show HG01099.hp2 HG01192.hp2 HG02056.hp2 HG02074.hp2 HG02145.hp1 HG02683.hp2 HG03209.hp2 HG03704.hp1 HG03710.hp1 NA19087.hp1	3_prime_UTR_variant	MODIFIER	c.83A>G c.83A>G	TRIM49C	ENSG00000204449.3	transcript	ENST00000448984.1	protein_coding	8/8	83	chr11	90041633
chr11:90041747	T T	C C	1	a0001c0003t0004 a0001c0003t0004	1	HG00741.hp2 HG00741.hp2	3_prime_UTR_variant	MODIFIER	c.197T>C c.197T>C	TRIM49C	ENSG00000204449.3	transcript	ENST00000448984.1	protein_coding	8/8	197	chr11	90041747
chr11:90041850	A A	T T	2	a0002c0002t0007 a0004c0006t0003 a0002c0002t0007 a0004c0006t0003	2	HG00639.hp2 HG01099.hp2 HG00639.hp2 HG01099.hp2	3_prime_UTR_variant	MODIFIER	c.300A>T c.300A>T	TRIM49C	ENSG00000204449.3	transcript	ENST00000448984.1	protein_coding	8/8	300	chr11	90041850
chr11:90041885	C C	G G	1	a0004c0006t0003 a0004c0006t0003	1	HG00639.hp2 HG00639.hp2	3_prime_UTR_variant	MODIFIER	c.335C>G c.335C>G	TRIM49C	ENSG00000204449.3	transcript	ENST00000448984.1	protein_coding	8/8	335	chr11	90041885
chr11:90041932	A A	G G	2	a0001c0001t0006 a0004c0006t0003 a0001c0001t0006 a0004c0006t0003	2	HG00639.hp2 NA18959.hp2 HG00639.hp2 NA18959.hp2	3_prime_UTR_variant	MODIFIER	c.382A>G c.382A>G	TRIM49C	ENSG00000204449.3	transcript	ENST00000448984.1	protein_coding	8/8	382	chr11	90041932
chr11:90041957	C C	T T	1	a0001c0001t0005 a0001c0001t0005	1	HG00408.hp2 HG00408.hp2	3_prime_UTR_variant	MODIFIER	c.407C>T c.407C>T	TRIM49C	ENSG00000204449.3	transcript	ENST00000448984.1	protein_coding	8/8	407	chr11	90041957
chr11:90042015	T T	G G	1	a0004c0006t0003 a0004c0006t0003	1	HG00639.hp2 HG00639.hp2	3_prime_UTR_variant	MODIFIER	c.465T>G c.465T>G	TRIM49C	ENSG00000204449.3	transcript	ENST00000448984.1	protein_coding	8/8	465	chr11	90042015

chr:pos	ref	alt	# # of ghapid:genebody level	ghapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	genename	geneid	featuretype	featureid	genebody_biotype	rank	status	chr	pos
chr11:90031498	T T	C C	1	a0004c0006t0003g0013 a0004c0006t0003g0013	1	HG00639.hp2 HG00639.hp2	intron_variant	MODIFIER	c.-191+254T>C c.-191+254T>C	TRIM49C	ENSG00000204449.3	transcript	ENST00000448984.1	protein_coding	1/7		chr11	90031498
chr11:90031923	C C	T T	16	a0001c0001t0001g0002 a0001c0001t0001g0005 a0001c0001t0001g0007 others(13): Show a0001c0001t0001g0002 a0001c0001t0001g0005 a0001c0001t0001g0007 a0001c0001t0001g0011 a0001c0001t0001g0012 a0001c0001t0001g0030 a0001c0001t0001g0031 a0001c0001t0001g0032 a0001c0001t0001g0033 a0001c0001t0001g0034 a0001c0001t0001g0035 a0001c0001t0005g0002 a0001c0001t0006g0002 a0003c0004t0001g0005 a0004c0006t0003g0013 a0006c0007t0001g0007	37	HG00408.hp2 HG00544.hp1 HG00544.hp2 others(34): Show HG00408.hp2 HG00544.hp1 HG00544.hp2 HG00639.hp1 HG00639.hp2 HG00738.hp1 HG01123.hp1 HG01167.hp1 HG01192.hp1 HG02004.hp1 HG02071.hp1 HG02071.hp2 HG02080.hp2 HG02132.hp1 HG02135.hp2 HG03704.hp2 HG04199.hp1 HG04199.hp2 NA18612.hp1 NA18939.hp1 NA18939.hp2 NA18947.hp2 NA18949.hp1 NA18959.hp2 NA18961.hp1 NA18963.hp1 NA18963.hp2 NA18965.hp2 NA18980.hp1 NA18993.hp1 NA18994.hp1 NA18997.hp2 NA19059.hp1 NA19065.hp2 NA19066.hp2 NA19070.hp2 NA19078.hp2	intron_variant	MODIFIER	c.-190-474C>T c.-190-474C>T	TRIM49C	ENSG00000204449.3	transcript	ENST00000448984.1	protein_coding	1/7		chr11	90031923
chr11:90031960	G G	T T	1	a0004c0006t0003g0013 a0004c0006t0003g0013	1	HG00639.hp2 HG00639.hp2	intron_variant	MODIFIER	c.-190-437G>T c.-190-437G>T	TRIM49C	ENSG00000204449.3	transcript	ENST00000448984.1	protein_coding	1/7		chr11	90031960
chr11:90032018	T T	G G	1	a0004c0006t0003g0013 a0004c0006t0003g0013	1	HG00639.hp2 HG00639.hp2	intron_variant	MODIFIER	c.-190-379T>G c.-190-379T>G	TRIM49C	ENSG00000204449.3	transcript	ENST00000448984.1	protein_coding	1/7		chr11	90032018
chr11:90032160	A A	G G	1	a0001c0001t0001g0029 a0001c0001t0001g0029	1	NA19030.hp2 NA19030.hp2	intron_variant	MODIFIER	c.-190-237A>G c.-190-237A>G	TRIM49C	ENSG00000204449.3	transcript	ENST00000448984.1	protein_coding	1/7		chr11	90032160
chr11:90032238	G G	A A	2	a0001c0001t0001g0006 a0004c0006t0003g0013 a0001c0001t0001g0006 a0004c0006t0003g0013	4	HG00280.hp1 HG00639.hp2 HG03490.hp1 others(1): Show HG00280.hp1 HG00639.hp2 HG03490.hp1 HG03492.hp2	intron_variant	MODIFIER	c.-190-159G>A c.-190-159G>A	TRIM49C	ENSG00000204449.3	transcript	ENST00000448984.1	protein_coding	1/7		chr11	90032238
chr11:90032322	T T	C C	1	a0004c0006t0003g0013 a0004c0006t0003g0013	1	HG00639.hp2 HG00639.hp2	intron_variant	MODIFIER	c.-190-75T>C c.-190-75T>C	TRIM49C	ENSG00000204449.3	transcript	ENST00000448984.1	protein_coding	1/7		chr11	90032322
chr11:90032665	T T	G G	8	a0001c0001t0001g0008 a0002c0002t0002g0004 a0002c0002t0002g0009 others(5): Show a0001c0001t0001g0008 a0002c0002t0002g0004 a0002c0002t0002g0009 a0002c0002t0002g0014 a0002c0002t0002g0015 a0002c0002t0002g0016 a0002c0002t0007g0004 a0004c0006t0003g0013	13	HG00639.hp2 HG01099.hp2 HG01192.hp2 others(10): Show HG00639.hp2 HG01099.hp2 HG01192.hp2 HG02056.hp2 HG02074.hp2 HG02145.hp1 HG02683.hp2 HG03209.hp2 HG03704.hp1 HG03710.hp1 HG03927.hp1 NA18959.hp1 NA19087.hp1	intron_variant	MODIFIER	c.-5+83T>G c.-5+83T>G	TRIM49C	ENSG00000204449.3	transcript	ENST00000448984.1	protein_coding	2/7		chr11	90032665
chr11:90033106	T T	A A	1	a0004c0006t0003g0013 a0004c0006t0003g0013	1	HG00639.hp2 HG00639.hp2	intron_variant	MODIFIER	c.-5+524T>A c.-5+524T>A	TRIM49C	ENSG00000204449.3	transcript	ENST00000448984.1	protein_coding	2/7		chr11	90033106
chr11:90033408	G G	A A	1	a0004c0006t0003g0013 a0004c0006t0003g0013	1	HG00639.hp2 HG00639.hp2	intron_variant	MODIFIER	c.-5+826G>A c.-5+826G>A	TRIM49C	ENSG00000204449.3	transcript	ENST00000448984.1	protein_coding	2/7		chr11	90033408
chr11:90033420	T T	G G	1	a0004c0006t0003g0013 a0004c0006t0003g0013	1	HG00639.hp2 HG00639.hp2	intron_variant	MODIFIER	c.-5+838T>G c.-5+838T>G	TRIM49C	ENSG00000204449.3	transcript	ENST00000448984.1	protein_coding	2/7		chr11	90033420
chr11:90033460	C C	T T	1	a0004c0006t0003g0013 a0004c0006t0003g0013	1	HG00639.hp2 HG00639.hp2	intron_variant	MODIFIER	c.-5+878C>T c.-5+878C>T	TRIM49C	ENSG00000204449.3	transcript	ENST00000448984.1	protein_coding	2/7		chr11	90033460
chr11:90033488	A A	G G	1	a0001c0001t0001g0028 a0001c0001t0001g0028	1	NA19088.hp2 NA19088.hp2	intron_variant	MODIFIER	c.-5+906A>G c.-5+906A>G	TRIM49C	ENSG00000204449.3	transcript	ENST00000448984.1	protein_coding	2/7		chr11	90033488
chr11:90033661	T T	G G	3	a0001c0001t0001g0017 a0002c0002t0002g0014 a0004c0006t0003g0013 a0001c0001t0001g0017 a0002c0002t0002g0014 a0004c0006t0003g0013	3	HG00639.hp2 HG02056.hp1 HG02056.hp2 HG00639.hp2 HG02056.hp1 HG02056.hp2	intron_variant	MODIFIER	c.-5+1079T>G c.-5+1079T>G	TRIM49C	ENSG00000204449.3	transcript	ENST00000448984.1	protein_coding	2/7		chr11	90033661
chr11:90033687	T T	G G	2	a0001c0001t0001g0018 a0004c0006t0003g0013 a0001c0001t0001g0018 a0004c0006t0003g0013	2	HG00639.hp2 HG02004.hp2 HG00639.hp2 HG02004.hp2	intron_variant	MODIFIER	c.-5+1105T>G c.-5+1105T>G	TRIM49C	ENSG00000204449.3	transcript	ENST00000448984.1	protein_coding	2/7		chr11	90033687
chr11:90033957	C C	A A	1	a0002c0002t0002g0015 a0002c0002t0002g0015	1	HG02145.hp1 HG02145.hp1	intron_variant	MODIFIER	c.-4-1251C>A c.-4-1251C>A	TRIM49C	ENSG00000204449.3	transcript	ENST00000448984.1	protein_coding	2/7		chr11	90033957
chr11:90033957	CA CA	C C	5	a0002c0002t0002g0004 a0002c0002t0002g0009 a0002c0002t0002g0014 others(2): Show a0002c0002t0002g0004 a0002c0002t0002g0009 a0002c0002t0002g0014 a0002c0002t0002g0016 a0002c0002t0007g0004	9	HG01099.hp2 HG01192.hp2 HG02056.hp2 others(6): Show HG01099.hp2 HG01192.hp2 HG02056.hp2 HG02074.hp2 HG02683.hp2 HG03209.hp2 HG03704.hp1 HG03710.hp1 NA19087.hp1	intron_variant	MODIFIER	c.-4-1240delA c.-4-1240delA	TRIM49C	ENSG00000204449.3	transcript	ENST00000448984.1	protein_coding	2/7	INFO_REALIGN_3_PRIME	chr11	90033957
chr11:90033958	A A	C C	1	a0002c0002t0002g0015 a0002c0002t0002g0015	1	HG02145.hp1 HG02145.hp1	intron_variant	MODIFIER	c.-4-1250A>C c.-4-1250A>C	TRIM49C	ENSG00000204449.3	transcript	ENST00000448984.1	protein_coding	2/7		chr11	90033958
chr11:90033985	T T	C C	1	a0004c0006t0003g0013 a0004c0006t0003g0013	1	HG00639.hp2 HG00639.hp2	intron_variant	MODIFIER	c.-4-1223T>C c.-4-1223T>C	TRIM49C	ENSG00000204449.3	transcript	ENST00000448984.1	protein_coding	2/7		chr11	90033985
chr11:90034156	C C	G G	7	a0002c0002t0002g0004 a0002c0002t0002g0009 a0002c0002t0002g0014 others(4): Show a0002c0002t0002g0004 a0002c0002t0002g0009 a0002c0002t0002g0014 a0002c0002t0002g0015 a0002c0002t0002g0016 a0002c0002t0007g0004 a0004c0006t0003g0013	11	HG00639.hp2 HG01099.hp2 HG01192.hp2 others(8): Show HG00639.hp2 HG01099.hp2 HG01192.hp2 HG02056.hp2 HG02074.hp2 HG02145.hp1 HG02683.hp2 HG03209.hp2 HG03704.hp1 HG03710.hp1 NA19087.hp1	intron_variant	MODIFIER	c.-4-1052C>G c.-4-1052C>G	TRIM49C	ENSG00000204449.3	transcript	ENST00000448984.1	protein_coding	2/7		chr11	90034156
chr11:90034165	A A	G G	6	a0002c0002t0002g0004 a0002c0002t0002g0009 a0002c0002t0002g0014 others(3): Show a0002c0002t0002g0004 a0002c0002t0002g0009 a0002c0002t0002g0014 a0002c0002t0002g0015 a0002c0002t0002g0016 a0002c0002t0007g0004	10	HG01099.hp2 HG01192.hp2 HG02056.hp2 others(7): Show HG01099.hp2 HG01192.hp2 HG02056.hp2 HG02074.hp2 HG02145.hp1 HG02683.hp2 HG03209.hp2 HG03704.hp1 HG03710.hp1 NA19087.hp1	intron_variant	MODIFIER	c.-4-1043A>G c.-4-1043A>G	TRIM49C	ENSG00000204449.3	transcript	ENST00000448984.1	protein_coding	2/7		chr11	90034165
chr11:90034178	G G	C C	1	a0001c0001t0001g0030 a0001c0001t0001g0030	1	HG03704.hp2 HG03704.hp2	intron_variant	MODIFIER	c.-4-1030G>C c.-4-1030G>C	TRIM49C	ENSG00000204449.3	transcript	ENST00000448984.1	protein_coding	2/7		chr11	90034178
chr11:90034287	G G	A A	6	a0002c0002t0002g0004 a0002c0002t0002g0009 a0002c0002t0002g0014 others(3): Show a0002c0002t0002g0004 a0002c0002t0002g0009 a0002c0002t0002g0014 a0002c0002t0002g0015 a0002c0002t0002g0016 a0002c0002t0007g0004	10	HG01099.hp2 HG01192.hp2 HG02056.hp2 others(7): Show HG01099.hp2 HG01192.hp2 HG02056.hp2 HG02074.hp2 HG02145.hp1 HG02683.hp2 HG03209.hp2 HG03704.hp1 HG03710.hp1 NA19087.hp1	intron_variant	MODIFIER	c.-4-921G>A c.-4-921G>A	TRIM49C	ENSG00000204449.3	transcript	ENST00000448984.1	protein_coding	2/7		chr11	90034287
chr11:90034565	G G	A A	2	a0002c0002t0002g0016 a0004c0006t0003g0013 a0002c0002t0002g0016 a0004c0006t0003g0013	2	HG00639.hp2 HG01192.hp2 HG00639.hp2 HG01192.hp2	intron_variant	MODIFIER	c.-4-643G>A c.-4-643G>A	TRIM49C	ENSG00000204449.3	transcript	ENST00000448984.1	protein_coding	2/7		chr11	90034565
chr11:90034607	C C	CT CT	7	a0002c0002t0002g0004 a0002c0002t0002g0009 a0002c0002t0002g0014 others(4): Show a0002c0002t0002g0004 a0002c0002t0002g0009 a0002c0002t0002g0014 a0002c0002t0002g0015 a0002c0002t0002g0016 a0002c0002t0007g0004 a0004c0006t0003g0013	11	HG00639.hp2 HG01099.hp2 HG01192.hp2 others(8): Show HG00639.hp2 HG01099.hp2 HG01192.hp2 HG02056.hp2 HG02074.hp2 HG02145.hp1 HG02683.hp2 HG03209.hp2 HG03704.hp1 HG03710.hp1 NA19087.hp1	intron_variant	MODIFIER	c.-4-594dupT c.-4-594dupT	TRIM49C	ENSG00000204449.3	transcript	ENST00000448984.1	protein_coding	2/7	INFO_REALIGN_3_PRIME	chr11	90034607
chr11:90034615	A A	T T	1	a0004c0006t0003g0013 a0004c0006t0003g0013	1	HG00639.hp2 HG00639.hp2	intron_variant	MODIFIER	c.-4-593A>T c.-4-593A>T	TRIM49C	ENSG00000204449.3	transcript	ENST00000448984.1	protein_coding	2/7		chr11	90034615
chr11:90034704	A A	G G	1	a0004c0006t0003g0013 a0004c0006t0003g0013	1	HG00639.hp2 HG00639.hp2	intron_variant	MODIFIER	c.-4-504A>G c.-4-504A>G	TRIM49C	ENSG00000204449.3	transcript	ENST00000448984.1	protein_coding	2/7		chr11	90034704
chr11:90034714	G G	A A	6	a0002c0002t0002g0004 a0002c0002t0002g0009 a0002c0002t0002g0014 others(3): Show a0002c0002t0002g0004 a0002c0002t0002g0009 a0002c0002t0002g0014 a0002c0002t0002g0015 a0002c0002t0002g0016 a0002c0002t0007g0004	10	HG01099.hp2 HG01192.hp2 HG02056.hp2 others(7): Show HG01099.hp2 HG01192.hp2 HG02056.hp2 HG02074.hp2 HG02145.hp1 HG02683.hp2 HG03209.hp2 HG03704.hp1 HG03710.hp1 NA19087.hp1	intron_variant	MODIFIER	c.-4-494G>A c.-4-494G>A	TRIM49C	ENSG00000204449.3	transcript	ENST00000448984.1	protein_coding	2/7		chr11	90034714
chr11:90034816	T T	C C	1	a0004c0006t0003g0013 a0004c0006t0003g0013	1	HG00639.hp2 HG00639.hp2	intron_variant	MODIFIER	c.-4-392T>C c.-4-392T>C	TRIM49C	ENSG00000204449.3	transcript	ENST00000448984.1	protein_coding	2/7		chr11	90034816
chr11:90034819	A A	G G	1	a0004c0006t0003g0013 a0004c0006t0003g0013	1	HG00639.hp2 HG00639.hp2	intron_variant	MODIFIER	c.-4-389A>G c.-4-389A>G	TRIM49C	ENSG00000204449.3	transcript	ENST00000448984.1	protein_coding	2/7		chr11	90034819
chr11:90035012	G G	A A	6	a0002c0002t0002g0004 a0002c0002t0002g0009 a0002c0002t0002g0014 others(3): Show a0002c0002t0002g0004 a0002c0002t0002g0009 a0002c0002t0002g0014 a0002c0002t0002g0015 a0002c0002t0002g0016 a0002c0002t0007g0004	10	HG01099.hp2 HG01192.hp2 HG02056.hp2 others(7): Show HG01099.hp2 HG01192.hp2 HG02056.hp2 HG02074.hp2 HG02145.hp1 HG02683.hp2 HG03209.hp2 HG03704.hp1 HG03710.hp1 NA19087.hp1	intron_variant	MODIFIER	c.-4-196G>A c.-4-196G>A	TRIM49C	ENSG00000204449.3	transcript	ENST00000448984.1	protein_coding	2/7		chr11	90035012
chr11:90035030	T T	G G	8	a0001c0001t0001g0019 a0002c0002t0002g0004 a0002c0002t0002g0009 others(5): Show a0001c0001t0001g0019 a0002c0002t0002g0004 a0002c0002t0002g0009 a0002c0002t0002g0014 a0002c0002t0002g0015 a0002c0002t0002g0016 a0002c0002t0007g0004 a0004c0006t0003g0013	12	HG00639.hp2 HG01099.hp2 HG01192.hp2 others(9): Show HG00639.hp2 HG01099.hp2 HG01192.hp2 HG02056.hp2 HG02074.hp2 HG02145.hp1 HG02683.hp2 HG03209.hp2 HG03704.hp1 HG03710.hp1 NA18944.hp2 NA19087.hp1	intron_variant	MODIFIER	c.-4-178T>G c.-4-178T>G	TRIM49C	ENSG00000204449.3	transcript	ENST00000448984.1	protein_coding	2/7		chr11	90035030
chr11:90035137	A A	T T	1	a0001c0001t0001g0017 a0001c0001t0001g0017	1	HG02056.hp1 HG02056.hp1	intron_variant	MODIFIER	c.-4-71A>T c.-4-71A>T	TRIM49C	ENSG00000204449.3	transcript	ENST00000448984.1	protein_coding	2/7		chr11	90035137
chr11:90035143	C C	G G	6	a0002c0002t0002g0004 a0002c0002t0002g0009 a0002c0002t0002g0014 others(3): Show a0002c0002t0002g0004 a0002c0002t0002g0009 a0002c0002t0002g0014 a0002c0002t0002g0015 a0002c0002t0002g0016 a0002c0002t0007g0004	10	HG01099.hp2 HG01192.hp2 HG02056.hp2 others(7): Show HG01099.hp2 HG01192.hp2 HG02056.hp2 HG02074.hp2 HG02145.hp1 HG02683.hp2 HG03209.hp2 HG03704.hp1 HG03710.hp1 NA19087.hp1	intron_variant	MODIFIER	c.-4-65C>G c.-4-65C>G	TRIM49C	ENSG00000204449.3	transcript	ENST00000448984.1	protein_coding	2/7		chr11	90035143
chr11:90035158	C C	G G	1	a0004c0006t0003g0013 a0004c0006t0003g0013	1	HG00639.hp2 HG00639.hp2	intron_variant	MODIFIER	c.-4-50C>G c.-4-50C>G	TRIM49C	ENSG00000204449.3	transcript	ENST00000448984.1	protein_coding	2/7		chr11	90035158
chr11:90035173	G G	A A	1	a0001c0001t0001g0031 a0001c0001t0001g0031	1	HG02071.hp2 HG02071.hp2	intron_variant	MODIFIER	c.-4-35G>A c.-4-35G>A	TRIM49C	ENSG00000204449.3	transcript	ENST00000448984.1	protein_coding	2/7		chr11	90035173
chr11:90035174	G G	T T	1	a0001c0001t0001g0031 a0001c0001t0001g0031	1	HG02071.hp2 HG02071.hp2	intron_variant	MODIFIER	c.-4-34G>T c.-4-34G>T	TRIM49C	ENSG00000204449.3	transcript	ENST00000448984.1	protein_coding	2/7		chr11	90035174
chr11:90035192	T T	G G	6	a0002c0002t0002g0004 a0002c0002t0002g0009 a0002c0002t0002g0014 others(3): Show a0002c0002t0002g0004 a0002c0002t0002g0009 a0002c0002t0002g0014 a0002c0002t0002g0015 a0002c0002t0002g0016 a0002c0002t0007g0004	10	HG01099.hp2 HG01192.hp2 HG02056.hp2 others(7): Show HG01099.hp2 HG01192.hp2 HG02056.hp2 HG02074.hp2 HG02145.hp1 HG02683.hp2 HG03209.hp2 HG03704.hp1 HG03710.hp1 NA19087.hp1	intron_variant	MODIFIER	c.-4-16T>G c.-4-16T>G	TRIM49C	ENSG00000204449.3	transcript	ENST00000448984.1	protein_coding	2/7		chr11	90035192
chr11:90035645	G G	T T	25	a0001c0001t0001g0001 a0001c0001t0001g0002 a0001c0001t0001g0005 others(22): Show a0001c0001t0001g0001 a0001c0001t0001g0002 a0001c0001t0001g0005 a0001c0001t0001g0006 a0001c0001t0001g0007 a0001c0001t0001g0008 a0001c0001t0001g0010 a0001c0001t0001g0011 a0001c0001t0001g0012 a0001c0001t0001g0017 a0001c0001t0001g0018 a0001c0001t0001g0025 a0001c0001t0001g0026 a0001c0001t0001g0027 a0001c0001t0001g0028 a0001c0001t0001g0030 a0001c0001t0001g0031 a0001c0001t0001g0032 a0001c0001t0001g0033 a0001c0001t0001g0034 a0001c0001t0001g0035 a0001c0001t0005g0002 a0001c0001t0006g0002 a0003c0004t0001g0005 a0006c0007t0001g0007	87	HG00099.hp1 HG00280.hp1 HG00280.hp2 others(84): Show HG00099.hp1 HG00280.hp1 HG00280.hp2 HG00408.hp1 HG00408.hp2 HG00544.hp1 HG00544.hp2 HG00639.hp1 HG00735.hp2 HG00738.hp1 HG00741.hp1 HG01099.hp1 HG01123.hp1 HG01123.hp2 HG01167.hp1 HG01167.hp2 HG01192.hp1 HG01258.hp1 HG01515.hp1 HG01515.hp2 HG02004.hp1 HG02004.hp2 HG02056.hp1 HG02071.hp1 HG02071.hp2 HG02074.hp1 HG02080.hp1 HG02080.hp2 HG02132.hp1 HG02132.hp2 HG02135.hp1 HG02135.hp2 HG02145.hp2 HG02683.hp1 HG03490.hp1 HG03492.hp2 HG03704.hp2 HG03710.hp2 HG03927.hp1 HG03927.hp2 HG04199.hp1 HG04199.hp2 NA18612.hp1 NA18612.hp2 NA18939.hp1 NA18939.hp2 NA18944.hp1 NA18947.hp1 NA18947.hp2 NA18949.hp1 NA18949.hp2 NA18955.hp1 NA18955.hp2 NA18959.hp1 NA18959.hp2 NA18961.hp1 NA18961.hp2 NA18963.hp1 NA18963.hp2 NA18965.hp1 NA18965.hp2 NA18971.hp1 NA18971.hp2 NA18980.hp1 NA18980.hp2 NA18981.hp1 NA18981.hp2 NA18993.hp1 NA18994.hp1 NA18994.hp2 NA18997.hp2 NA19030.hp1 NA19054.hp1 NA19054.hp2 NA19059.hp1 NA19059.hp2 NA19065.hp2 NA19066.hp1 NA19066.hp2 NA19070.hp2 NA19078.hp2 NA19088.hp2 NA20129.hp1 NA20129.hp2 NA20752.hp1 NA20752.hp2 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.411+23G>T c.411+23G>T	TRIM49C	ENSG00000204449.3	transcript	ENST00000448984.1	protein_coding	3/7		chr11	90035645
chr11:90035697	A A	G G	8	a0001c0001t0001g0027 a0002c0002t0002g0004 a0002c0002t0002g0009 others(5): Show a0001c0001t0001g0027 a0002c0002t0002g0004 a0002c0002t0002g0009 a0002c0002t0002g0014 a0002c0002t0002g0015 a0002c0002t0002g0016 a0002c0002t0007g0004 a0004c0006t0003g0013	12	HG00408.hp1 HG00639.hp2 HG01099.hp2 others(9): Show HG00408.hp1 HG00639.hp2 HG01099.hp2 HG01192.hp2 HG02056.hp2 HG02074.hp2 HG02145.hp1 HG02683.hp2 HG03209.hp2 HG03704.hp1 HG03710.hp1 NA19087.hp1	intron_variant	MODIFIER	c.411+75A>G c.411+75A>G	TRIM49C	ENSG00000204449.3	transcript	ENST00000448984.1	protein_coding	3/7		chr11	90035697
chr11:90035699	G G	A A	8	a0001c0001t0001g0027 a0002c0002t0002g0004 a0002c0002t0002g0009 others(5): Show a0001c0001t0001g0027 a0002c0002t0002g0004 a0002c0002t0002g0009 a0002c0002t0002g0014 a0002c0002t0002g0015 a0002c0002t0002g0016 a0002c0002t0007g0004 a0004c0006t0003g0013	12	HG00408.hp1 HG00639.hp2 HG01099.hp2 others(9): Show HG00408.hp1 HG00639.hp2 HG01099.hp2 HG01192.hp2 HG02056.hp2 HG02074.hp2 HG02145.hp1 HG02683.hp2 HG03209.hp2 HG03704.hp1 HG03710.hp1 NA19087.hp1	intron_variant	MODIFIER	c.411+77G>A c.411+77G>A	TRIM49C	ENSG00000204449.3	transcript	ENST00000448984.1	protein_coding	3/7		chr11	90035699
chr11:90036014	G G	C C	1	a0001c0001t0001g0010 a0001c0001t0001g0010	2	HG02135.hp1 NA18981.hp2 HG02135.hp1 NA18981.hp2	intron_variant	MODIFIER	c.507+31G>C c.507+31G>C	TRIM49C	ENSG00000204449.3	transcript	ENST00000448984.1	protein_coding	4/7		chr11	90036014
chr11:90036114	T T	C C	8	a0001c0001t0001g0027 a0002c0002t0002g0004 a0002c0002t0002g0009 others(5): Show a0001c0001t0001g0027 a0002c0002t0002g0004 a0002c0002t0002g0009 a0002c0002t0002g0014 a0002c0002t0002g0015 a0002c0002t0002g0016 a0002c0002t0007g0004 a0004c0006t0003g0013	12	HG00408.hp1 HG00639.hp2 HG01099.hp2 others(9): Show HG00408.hp1 HG00639.hp2 HG01099.hp2 HG01192.hp2 HG02056.hp2 HG02074.hp2 HG02145.hp1 HG02683.hp2 HG03209.hp2 HG03704.hp1 HG03710.hp1 NA19087.hp1	intron_variant	MODIFIER	c.507+131T>C c.507+131T>C	TRIM49C	ENSG00000204449.3	transcript	ENST00000448984.1	protein_coding	4/7		chr11	90036114
chr11:90036141	C C	T T	8	a0001c0001t0001g0027 a0002c0002t0002g0004 a0002c0002t0002g0009 others(5): Show a0001c0001t0001g0027 a0002c0002t0002g0004 a0002c0002t0002g0009 a0002c0002t0002g0014 a0002c0002t0002g0015 a0002c0002t0002g0016 a0002c0002t0007g0004 a0004c0006t0003g0013	12	HG00408.hp1 HG00639.hp2 HG01099.hp2 others(9): Show HG00408.hp1 HG00639.hp2 HG01099.hp2 HG01192.hp2 HG02056.hp2 HG02074.hp2 HG02145.hp1 HG02683.hp2 HG03209.hp2 HG03704.hp1 HG03710.hp1 NA19087.hp1	intron_variant	MODIFIER	c.507+158C>T c.507+158C>T	TRIM49C	ENSG00000204449.3	transcript	ENST00000448984.1	protein_coding	4/7		chr11	90036141
chr11:90036400	C C	T T	2	a0001c0001t0001g0012 a0001c0001t0001g0035 a0001c0001t0001g0012 a0001c0001t0001g0035	3	NA18939.hp1 NA18961.hp1 NA19070.hp2 NA18939.hp1 NA18961.hp1 NA19070.hp2	intron_variant	MODIFIER	c.507+417C>T c.507+417C>T	TRIM49C	ENSG00000204449.3	transcript	ENST00000448984.1	protein_coding	4/7		chr11	90036400
chr11:90036633	T T	C C	1	a0004c0006t0003g0013 a0004c0006t0003g0013	1	HG00639.hp2 HG00639.hp2	intron_variant	MODIFIER	c.507+650T>C c.507+650T>C	TRIM49C	ENSG00000204449.3	transcript	ENST00000448984.1	protein_coding	4/7		chr11	90036633
chr11:90036798	G G	T T	1	a0004c0006t0003g0013 a0004c0006t0003g0013	1	HG00639.hp2 HG00639.hp2	intron_variant	MODIFIER	c.507+815G>T c.507+815G>T	TRIM49C	ENSG00000204449.3	transcript	ENST00000448984.1	protein_coding	4/7		chr11	90036798
chr11:90036846	G G	A A	1	a0001c0001t0001g0035 a0001c0001t0001g0035	1	NA18939.hp1 NA18939.hp1	intron_variant	MODIFIER	c.507+863G>A c.507+863G>A	TRIM49C	ENSG00000204449.3	transcript	ENST00000448984.1	protein_coding	4/7		chr11	90036846
chr11:90036982	C C	G G	1	a0004c0006t0003g0013 a0004c0006t0003g0013	1	HG00639.hp2 HG00639.hp2	intron_variant	MODIFIER	c.508-767C>G c.508-767C>G	TRIM49C	ENSG00000204449.3	transcript	ENST00000448984.1	protein_coding	4/7		chr11	90036982
chr11:90037071	ATATGTAT others(1): Show ATATGTATG	A A	39	a0001c0001t0001g0001 a0001c0001t0001g0002 a0001c0001t0001g0003 others(36): Show a0001c0001t0001g0001 a0001c0001t0001g0002 a0001c0001t0001g0003 a0001c0001t0001g0005 a0001c0001t0001g0006 a0001c0001t0001g0007 a0001c0001t0001g0008 a0001c0001t0001g0010 a0001c0001t0001g0011 a0001c0001t0001g0012 a0001c0001t0001g0017 a0001c0001t0001g0018 a0001c0001t0001g0019 a0001c0001t0001g0023 a0001c0001t0001g0024 a0001c0001t0001g0025 a0001c0001t0001g0026 a0001c0001t0001g0027 a0001c0001t0001g0028 a0001c0001t0001g0029 a0001c0001t0001g0030 a0001c0001t0001g0031 a0001c0001t0001g0033 a0001c0001t0001g0034 a0001c0001t0001g0035 a0001c0001t0005g0002 a0001c0001t0006g0002 a0001c0003t0001g0003 a0001c0003t0001g0021 a0001c0003t0004g0003 a0002c0002t0002g0004 a0002c0002t0002g0009 a0002c0002t0002g0014 a0002c0002t0002g0015 a0002c0002t0002g0016 a0002c0002t0007g0004 a0003c0004t0001g0005 a0005c0005t0001g0022 a0006c0007t0001g0007	117	HG00099.hp1 HG00099.hp2 HG00280.hp1 others(114): Show HG00099.hp1 HG00099.hp2 HG00280.hp1 HG00280.hp2 HG00408.hp1 HG00408.hp2 HG00544.hp1 HG00544.hp2 HG00639.hp1 HG00733.hp1 HG00733.hp2 HG00735.hp1 HG00735.hp2 HG00738.hp1 HG00738.hp2 HG00741.hp1 HG00741.hp2 HG01071.hp1 HG01071.hp2 HG01099.hp1 HG01099.hp2 HG01123.hp1 HG01123.hp2 HG01167.hp1 HG01167.hp2 HG01192.hp1 HG01192.hp2 HG01258.hp1 HG01258.hp2 HG01515.hp1 HG01515.hp2 HG02004.hp1 HG02004.hp2 HG02056.hp1 HG02056.hp2 HG02071.hp1 HG02071.hp2 HG02074.hp1 HG02074.hp2 HG02080.hp1 HG02080.hp2 HG02132.hp2 HG02135.hp1 HG02135.hp2 HG02145.hp1 HG02145.hp2 HG02683.hp1 HG02683.hp2 HG03209.hp1 HG03209.hp2 HG03490.hp1 HG03490.hp2 HG03492.hp1 HG03492.hp2 HG03704.hp1 HG03704.hp2 HG03710.hp1 HG03710.hp2 HG03927.hp1 HG03927.hp2 HG04199.hp1 HG04199.hp2 NA18612.hp1 NA18612.hp2 NA18939.hp1 NA18939.hp2 NA18944.hp1 NA18944.hp2 NA18947.hp1 NA18947.hp2 NA18949.hp1 NA18949.hp2 NA18955.hp1 NA18955.hp2 NA18959.hp1 NA18959.hp2 NA18961.hp1 NA18961.hp2 NA18963.hp1 NA18963.hp2 NA18965.hp1 NA18965.hp2 NA18971.hp1 NA18971.hp2 NA18980.hp1 NA18980.hp2 NA18981.hp1 NA18981.hp2 NA18993.hp1 NA18993.hp2 NA18994.hp1 NA18994.hp2 NA18997.hp1 NA18997.hp2 NA19030.hp1 NA19030.hp2 NA19054.hp1 NA19054.hp2 NA19059.hp1 NA19059.hp2 NA19065.hp1 NA19065.hp2 NA19066.hp1 NA19066.hp2 NA19070.hp1 NA19070.hp2 NA19078.hp1 NA19078.hp2 NA19087.hp1 NA19087.hp2 NA19088.hp1 NA19088.hp2 NA20129.hp1 NA20129.hp2 NA20752.hp1 NA20752.hp2 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.508-656_508-649del others(8): Show c.508-656_508-649delATGTATGT	TRIM49C	ENSG00000204449.3	transcript	ENST00000448984.1	protein_coding	4/7	INFO_REALIGN_3_PRIME	chr11	90037071
chr11:90037145	T T	C C	1	a0004c0006t0003g0013 a0004c0006t0003g0013	1	HG00639.hp2 HG00639.hp2	intron_variant	MODIFIER	c.508-604T>C c.508-604T>C	TRIM49C	ENSG00000204449.3	transcript	ENST00000448984.1	protein_coding	4/7		chr11	90037145
chr11:90037163	T T	C C	6	a0002c0002t0002g0004 a0002c0002t0002g0009 a0002c0002t0002g0014 others(3): Show a0002c0002t0002g0004 a0002c0002t0002g0009 a0002c0002t0002g0014 a0002c0002t0002g0015 a0002c0002t0002g0016 a0002c0002t0007g0004	10	HG01099.hp2 HG01192.hp2 HG02056.hp2 others(7): Show HG01099.hp2 HG01192.hp2 HG02056.hp2 HG02074.hp2 HG02145.hp1 HG02683.hp2 HG03209.hp2 HG03704.hp1 HG03710.hp1 NA19087.hp1	intron_variant	MODIFIER	c.508-586T>C c.508-586T>C	TRIM49C	ENSG00000204449.3	transcript	ENST00000448984.1	protein_coding	4/7		chr11	90037163
chr11:90037190	G G	A A	1	a0004c0006t0003g0013 a0004c0006t0003g0013	1	HG00639.hp2 HG00639.hp2	intron_variant	MODIFIER	c.508-559G>A c.508-559G>A	TRIM49C	ENSG00000204449.3	transcript	ENST00000448984.1	protein_coding	4/7		chr11	90037190
chr11:90037276	A A	C C	6	a0002c0002t0002g0004 a0002c0002t0002g0009 a0002c0002t0002g0014 others(3): Show a0002c0002t0002g0004 a0002c0002t0002g0009 a0002c0002t0002g0014 a0002c0002t0002g0015 a0002c0002t0002g0016 a0002c0002t0007g0004	10	HG01099.hp2 HG01192.hp2 HG02056.hp2 others(7): Show HG01099.hp2 HG01192.hp2 HG02056.hp2 HG02074.hp2 HG02145.hp1 HG02683.hp2 HG03209.hp2 HG03704.hp1 HG03710.hp1 NA19087.hp1	intron_variant	MODIFIER	c.508-473A>C c.508-473A>C	TRIM49C	ENSG00000204449.3	transcript	ENST00000448984.1	protein_coding	4/7		chr11	90037276
chr11:90037380	T T	G G	2	a0001c0003t0001g0021 a0004c0006t0003g0013 a0001c0003t0001g0021 a0004c0006t0003g0013	2	HG00639.hp2 HG03490.hp2 HG00639.hp2 HG03490.hp2	intron_variant	MODIFIER	c.508-369T>G c.508-369T>G	TRIM49C	ENSG00000204449.3	transcript	ENST00000448984.1	protein_coding	4/7		chr11	90037380
chr11:90038135	C C	G G	1	a0001c0001t0001g0024 a0001c0001t0001g0024	1	HG01071.hp1 HG01071.hp1	intron_variant	MODIFIER	c.738+156C>G c.738+156C>G	TRIM49C	ENSG00000204449.3	transcript	ENST00000448984.1	protein_coding	5/7		chr11	90038135
chr11:90038155	G G	C C	7	a0002c0002t0002g0004 a0002c0002t0002g0009 a0002c0002t0002g0014 others(4): Show a0002c0002t0002g0004 a0002c0002t0002g0009 a0002c0002t0002g0014 a0002c0002t0002g0015 a0002c0002t0002g0016 a0002c0002t0007g0004 a0004c0006t0003g0013	11	HG00639.hp2 HG01099.hp2 HG01192.hp2 others(8): Show HG00639.hp2 HG01099.hp2 HG01192.hp2 HG02056.hp2 HG02074.hp2 HG02145.hp1 HG02683.hp2 HG03209.hp2 HG03704.hp1 HG03710.hp1 NA19087.hp1	intron_variant	MODIFIER	c.738+176G>C c.738+176G>C	TRIM49C	ENSG00000204449.3	transcript	ENST00000448984.1	protein_coding	5/7		chr11	90038155
chr11:90038222	A A	G G	7	a0002c0002t0002g0004 a0002c0002t0002g0009 a0002c0002t0002g0014 others(4): Show a0002c0002t0002g0004 a0002c0002t0002g0009 a0002c0002t0002g0014 a0002c0002t0002g0015 a0002c0002t0002g0016 a0002c0002t0007g0004 a0004c0006t0003g0013	11	HG00639.hp2 HG01099.hp2 HG01192.hp2 others(8): Show HG00639.hp2 HG01099.hp2 HG01192.hp2 HG02056.hp2 HG02074.hp2 HG02145.hp1 HG02683.hp2 HG03209.hp2 HG03704.hp1 HG03710.hp1 NA19087.hp1	intron_variant	MODIFIER	c.738+243A>G c.738+243A>G	TRIM49C	ENSG00000204449.3	transcript	ENST00000448984.1	protein_coding	5/7		chr11	90038222
chr11:90038545	A A	T T	1	a0004c0006t0003g0013 a0004c0006t0003g0013	1	HG00639.hp2 HG00639.hp2	intron_variant	MODIFIER	c.739-148A>T c.739-148A>T	TRIM49C	ENSG00000204449.3	transcript	ENST00000448984.1	protein_coding	5/7		chr11	90038545
chr11:90038558	T T	C C	1	a0004c0006t0003g0013 a0004c0006t0003g0013	1	HG00639.hp2 HG00639.hp2	intron_variant	MODIFIER	c.739-135T>C c.739-135T>C	TRIM49C	ENSG00000204449.3	transcript	ENST00000448984.1	protein_coding	5/7		chr11	90038558
chr11:90038658	A A	C C	6	a0002c0002t0002g0004 a0002c0002t0002g0009 a0002c0002t0002g0014 others(3): Show a0002c0002t0002g0004 a0002c0002t0002g0009 a0002c0002t0002g0014 a0002c0002t0002g0015 a0002c0002t0002g0016 a0002c0002t0007g0004	10	HG01099.hp2 HG01192.hp2 HG02056.hp2 others(7): Show HG01099.hp2 HG01192.hp2 HG02056.hp2 HG02074.hp2 HG02145.hp1 HG02683.hp2 HG03209.hp2 HG03704.hp1 HG03710.hp1 NA19087.hp1	intron_variant	MODIFIER	c.739-35A>C c.739-35A>C	TRIM49C	ENSG00000204449.3	transcript	ENST00000448984.1	protein_coding	5/7		chr11	90038658
chr11:90038676	CT CT	C C	7	a0001c0001t0001g0033 a0002c0002t0002g0004 a0002c0002t0002g0009 others(4): Show a0001c0001t0001g0033 a0002c0002t0002g0004 a0002c0002t0002g0009 a0002c0002t0002g0014 a0002c0002t0002g0015 a0002c0002t0002g0016 a0002c0002t0007g0004	11	HG01099.hp2 HG01192.hp2 HG02056.hp2 others(8): Show HG01099.hp2 HG01192.hp2 HG02056.hp2 HG02074.hp2 HG02145.hp1 HG02683.hp2 HG03209.hp2 HG03704.hp1 HG03710.hp1 NA19059.hp1 NA19087.hp1	splice_region_variant&intron_variant	LOW	c.739-4delT c.739-4delT	TRIM49C	ENSG00000204449.3	transcript	ENST00000448984.1	protein_coding	5/7	INFO_REALIGN_3_PRIME	chr11	90038676
chr11:90038923	G G	C C	1	a0004c0006t0003g0013 a0004c0006t0003g0013	1	HG00639.hp2 HG00639.hp2	intron_variant	MODIFIER	c.761+208G>C c.761+208G>C	TRIM49C	ENSG00000204449.3	transcript	ENST00000448984.1	protein_coding	6/7		chr11	90038923
chr11:90038944	C C	G G	7	a0002c0002t0002g0004 a0002c0002t0002g0009 a0002c0002t0002g0014 others(4): Show a0002c0002t0002g0004 a0002c0002t0002g0009 a0002c0002t0002g0014 a0002c0002t0002g0015 a0002c0002t0002g0016 a0002c0002t0007g0004 a0004c0006t0003g0013	11	HG00639.hp2 HG01099.hp2 HG01192.hp2 others(8): Show HG00639.hp2 HG01099.hp2 HG01192.hp2 HG02056.hp2 HG02074.hp2 HG02145.hp1 HG02683.hp2 HG03209.hp2 HG03704.hp1 HG03710.hp1 NA19087.hp1	intron_variant	MODIFIER	c.761+229C>G c.761+229C>G	TRIM49C	ENSG00000204449.3	transcript	ENST00000448984.1	protein_coding	6/7		chr11	90038944
chr11:90038998	C C	A A	1	a0004c0006t0003g0013 a0004c0006t0003g0013	1	HG00639.hp2 HG00639.hp2	intron_variant	MODIFIER	c.761+283C>A c.761+283C>A	TRIM49C	ENSG00000204449.3	transcript	ENST00000448984.1	protein_coding	6/7		chr11	90038998
chr11:90039210	T T	C C	1	a0004c0006t0003g0013 a0004c0006t0003g0013	1	HG00639.hp2 HG00639.hp2	intron_variant	MODIFIER	c.761+495T>C c.761+495T>C	TRIM49C	ENSG00000204449.3	transcript	ENST00000448984.1	protein_coding	6/7		chr11	90039210
chr11:90039263	AAG AAG	A A	7	a0002c0002t0002g0004 a0002c0002t0002g0009 a0002c0002t0002g0014 others(4): Show a0002c0002t0002g0004 a0002c0002t0002g0009 a0002c0002t0002g0014 a0002c0002t0002g0015 a0002c0002t0002g0016 a0002c0002t0007g0004 a0004c0006t0003g0013	11	HG00639.hp2 HG01099.hp2 HG01192.hp2 others(8): Show HG00639.hp2 HG01099.hp2 HG01192.hp2 HG02056.hp2 HG02074.hp2 HG02145.hp1 HG02683.hp2 HG03209.hp2 HG03704.hp1 HG03710.hp1 NA19087.hp1	intron_variant	MODIFIER	c.761+551_761+552del others(2): Show c.761+551_761+552delAG	TRIM49C	ENSG00000204449.3	transcript	ENST00000448984.1	protein_coding	6/7	INFO_REALIGN_3_PRIME	chr11	90039263
chr11:90039272	G G	T T	7	a0002c0002t0002g0004 a0002c0002t0002g0009 a0002c0002t0002g0014 others(4): Show a0002c0002t0002g0004 a0002c0002t0002g0009 a0002c0002t0002g0014 a0002c0002t0002g0015 a0002c0002t0002g0016 a0002c0002t0007g0004 a0004c0006t0003g0013	11	HG00639.hp2 HG01099.hp2 HG01192.hp2 others(8): Show HG00639.hp2 HG01099.hp2 HG01192.hp2 HG02056.hp2 HG02074.hp2 HG02145.hp1 HG02683.hp2 HG03209.hp2 HG03704.hp1 HG03710.hp1 NA19087.hp1	intron_variant	MODIFIER	c.761+557G>T c.761+557G>T	TRIM49C	ENSG00000204449.3	transcript	ENST00000448984.1	protein_coding	6/7		chr11	90039272
chr11:90039337	C C	T T	1	a0004c0006t0003g0013 a0004c0006t0003g0013	1	HG00639.hp2 HG00639.hp2	intron_variant	MODIFIER	c.762-528C>T c.762-528C>T	TRIM49C	ENSG00000204449.3	transcript	ENST00000448984.1	protein_coding	6/7		chr11	90039337
chr11:90039434	A A	G G	9	a0001c0001t0001g0005 a0002c0002t0002g0004 a0002c0002t0002g0009 others(6): Show a0001c0001t0001g0005 a0002c0002t0002g0004 a0002c0002t0002g0009 a0002c0002t0002g0014 a0002c0002t0002g0015 a0002c0002t0002g0016 a0002c0002t0007g0004 a0003c0004t0001g0005 a0004c0006t0003g0013	15	HG00639.hp2 HG01099.hp2 HG01123.hp1 others(12): Show HG00639.hp2 HG01099.hp2 HG01123.hp1 HG01192.hp1 HG01192.hp2 HG02004.hp1 HG02056.hp2 HG02074.hp2 HG02145.hp1 HG02683.hp2 HG03209.hp2 HG03704.hp1 HG03710.hp1 NA18963.hp2 NA19087.hp1	intron_variant	MODIFIER	c.762-431A>G c.762-431A>G	TRIM49C	ENSG00000204449.3	transcript	ENST00000448984.1	protein_coding	6/7		chr11	90039434
chr11:90039528	A A	G G	2	a0001c0001t0001g0034 a0004c0006t0003g0013 a0001c0001t0001g0034 a0004c0006t0003g0013	2	HG00639.hp2 HG04199.hp2 HG00639.hp2 HG04199.hp2	intron_variant	MODIFIER	c.762-337A>G c.762-337A>G	TRIM49C	ENSG00000204449.3	transcript	ENST00000448984.1	protein_coding	6/7		chr11	90039528
chr11:90039534	C C	T T	1	a0001c0001t0001g0006 a0001c0001t0001g0006	3	HG00280.hp1 HG03490.hp1 HG03492.hp2 HG00280.hp1 HG03490.hp1 HG03492.hp2	intron_variant	MODIFIER	c.762-331C>T c.762-331C>T	TRIM49C	ENSG00000204449.3	transcript	ENST00000448984.1	protein_coding	6/7		chr11	90039534
chr11:90039643	C C	CA CA	6	a0002c0002t0002g0004 a0002c0002t0002g0009 a0002c0002t0002g0014 others(3): Show a0002c0002t0002g0004 a0002c0002t0002g0009 a0002c0002t0002g0014 a0002c0002t0002g0015 a0002c0002t0002g0016 a0002c0002t0007g0004	10	HG01099.hp2 HG01192.hp2 HG02056.hp2 others(7): Show HG01099.hp2 HG01192.hp2 HG02056.hp2 HG02074.hp2 HG02145.hp1 HG02683.hp2 HG03209.hp2 HG03704.hp1 HG03710.hp1 NA19087.hp1	intron_variant	MODIFIER	c.762-212dupA c.762-212dupA	TRIM49C	ENSG00000204449.3	transcript	ENST00000448984.1	protein_coding	6/7	INFO_REALIGN_3_PRIME	chr11	90039643
chr11:90039741	T T	A A	6	a0002c0002t0002g0004 a0002c0002t0002g0009 a0002c0002t0002g0014 others(3): Show a0002c0002t0002g0004 a0002c0002t0002g0009 a0002c0002t0002g0014 a0002c0002t0002g0015 a0002c0002t0002g0016 a0002c0002t0007g0004	10	HG01099.hp2 HG01192.hp2 HG02056.hp2 others(7): Show HG01099.hp2 HG01192.hp2 HG02056.hp2 HG02074.hp2 HG02145.hp1 HG02683.hp2 HG03209.hp2 HG03704.hp1 HG03710.hp1 NA19087.hp1	intron_variant	MODIFIER	c.762-124T>A c.762-124T>A	TRIM49C	ENSG00000204449.3	transcript	ENST00000448984.1	protein_coding	6/7		chr11	90039741
chr11:90039783	A A	T T	1	a0004c0006t0003g0013 a0004c0006t0003g0013	1	HG00639.hp2 HG00639.hp2	intron_variant	MODIFIER	c.762-82A>T c.762-82A>T	TRIM49C	ENSG00000204449.3	transcript	ENST00000448984.1	protein_coding	6/7		chr11	90039783
chr11:90040065	A A	G G	1	a0002c0002t0002g0015 a0002c0002t0002g0015	1	HG02145.hp1 HG02145.hp1	intron_variant	MODIFIER	c.859+103A>G c.859+103A>G	TRIM49C	ENSG00000204449.3	transcript	ENST00000448984.1	protein_coding	7/7		chr11	90040065
chr11:90040444	A A	G G	1	a0004c0006t0003g0013 a0004c0006t0003g0013	1	HG00639.hp2 HG00639.hp2	intron_variant	MODIFIER	c.859+482A>G c.859+482A>G	TRIM49C	ENSG00000204449.3	transcript	ENST00000448984.1	protein_coding	7/7		chr11	90040444
chr11:90040639	T T	C C	1	a0004c0006t0003g0013 a0004c0006t0003g0013	1	HG00639.hp2 HG00639.hp2	intron_variant	MODIFIER	c.860-412T>C c.860-412T>C	TRIM49C	ENSG00000204449.3	transcript	ENST00000448984.1	protein_coding	7/7		chr11	90040639
chr11:90040943	T T	A A	3	a0001c0001t0001g0011 a0001c0001t0001g0025 a0005c0005t0001g0022 a0001c0001t0001g0011 a0001c0001t0001g0025 a0005c0005t0001g0022	4	HG00738.hp2 HG02132.hp2 NA18947.hp2 others(1): Show HG00738.hp2 HG02132.hp2 NA18947.hp2 NA18994.hp1	intron_variant	MODIFIER	c.860-108T>A c.860-108T>A	TRIM49C	ENSG00000204449.3	transcript	ENST00000448984.1	protein_coding	7/7		chr11	90040943
chr11:90041029	CT CT	C C	24	a0001c0001t0001g0001 a0001c0001t0001g0002 a0001c0001t0001g0005 others(21): Show a0001c0001t0001g0001 a0001c0001t0001g0002 a0001c0001t0001g0005 a0001c0001t0001g0006 a0001c0001t0001g0008 a0001c0001t0001g0010 a0001c0001t0001g0011 a0001c0001t0001g0012 a0001c0001t0001g0017 a0001c0001t0001g0018 a0001c0001t0001g0023 a0001c0001t0001g0025 a0001c0001t0001g0027 a0001c0001t0001g0028 a0001c0001t0001g0030 a0001c0001t0001g0031 a0001c0001t0001g0032 a0001c0001t0001g0033 a0001c0001t0001g0034 a0001c0001t0001g0035 a0001c0001t0005g0002 a0001c0001t0006g0002 a0002c0002t0002g0009 a0003c0004t0001g0005	86	HG00099.hp1 HG00280.hp1 HG00280.hp2 others(83): Show HG00099.hp1 HG00280.hp1 HG00280.hp2 HG00408.hp1 HG00408.hp2 HG00544.hp1 HG00544.hp2 HG00639.hp1 HG00735.hp2 HG00741.hp1 HG01099.hp1 HG01123.hp1 HG01123.hp2 HG01167.hp1 HG01167.hp2 HG01192.hp1 HG01258.hp1 HG01515.hp1 HG01515.hp2 HG02004.hp1 HG02004.hp2 HG02056.hp1 HG02071.hp1 HG02071.hp2 HG02074.hp1 HG02074.hp2 HG02080.hp1 HG02080.hp2 HG02132.hp1 HG02132.hp2 HG02135.hp1 HG02135.hp2 HG02145.hp2 HG02683.hp1 HG03490.hp1 HG03492.hp2 HG03704.hp1 HG03704.hp2 HG03710.hp2 HG03927.hp1 HG03927.hp2 HG04199.hp1 HG04199.hp2 NA18612.hp2 NA18939.hp1 NA18939.hp2 NA18947.hp1 NA18947.hp2 NA18949.hp1 NA18949.hp2 NA18955.hp1 NA18955.hp2 NA18959.hp1 NA18959.hp2 NA18961.hp1 NA18961.hp2 NA18963.hp1 NA18963.hp2 NA18965.hp1 NA18965.hp2 NA18971.hp1 NA18971.hp2 NA18980.hp1 NA18980.hp2 NA18981.hp1 NA18981.hp2 NA18993.hp1 NA18994.hp1 NA18994.hp2 NA19030.hp1 NA19054.hp1 NA19054.hp2 NA19059.hp1 NA19059.hp2 NA19065.hp2 NA19066.hp1 NA19066.hp2 NA19070.hp2 NA19078.hp2 NA19087.hp2 NA19088.hp2 NA20129.hp1 NA20129.hp2 NA20752.hp1 NA20752.hp2 homoSapiens_chm13v2.hp1	splice_region_variant&intron_variant	LOW	c.860-5delT c.860-5delT	TRIM49C	ENSG00000204449.3	transcript	ENST00000448984.1	protein_coding	7/7	INFO_REALIGN_3_PRIME	chr11	90041029
chr11:90041029	CTT CTT	C C	7	a0002c0002t0002g0004 a0002c0002t0002g0014 a0002c0002t0002g0015 others(4): Show a0002c0002t0002g0004 a0002c0002t0002g0014 a0002c0002t0002g0015 a0002c0002t0002g0016 a0002c0002t0007g0004 a0004c0006t0003g0013 a0005c0005t0001g0022	10	HG00639.hp2 HG00738.hp2 HG01099.hp2 others(7): Show HG00639.hp2 HG00738.hp2 HG01099.hp2 HG01192.hp2 HG02056.hp2 HG02145.hp1 HG02683.hp2 HG03209.hp2 HG03710.hp1 NA19087.hp1	splice_region_variant&intron_variant	LOW	c.860-6_860-5delTT c.860-6_860-5delTT	TRIM49C	ENSG00000204449.3	transcript	ENST00000448984.1	protein_coding	7/7	INFO_REALIGN_3_PRIME	chr11	90041029

Search by Genic region

Search

🧬 JoGo Online Haplotype Explorer TRIM49C_chr11_90026106_90047025

JoGo Local Haplotype Explorer (on iGV) TRIM49C_chr11_90026106_90047025

Translation Multiple Alignment View

ACTG-Haplotype Mutation Positions 3D Viewer

🧬 Gene Summary

AAmino acid(protein) Level Haplotype Info (Total: 6)

CCoding Level Haplotype Info (Total: 7)

TTranscript Level Haplotype Info (Total: 7)

GGenebody Level Haplotype Info (Total: 35)

A C AC Level (Amino Acid + Coding) Haplotype Info (Total: 7)

A C T ACT Level (Amino Acid + Coding + Transcript) Haplotype Info (Total: 11)

A C T G ACTG Level (Amino Acid + Coding + Transcript + Genebody) Haplotype Info (Total: 42)

Haplotype Details by Sample (Haploid Level) (Total: 120)

AAmino acid(protein) Level Haplotype Related Variants (Effect to Protein Coding Variants) (Total: 6)

CCoding Level Variants (Synonymous Mutations) (Total: 4)

TTranscript Level Haplotype Variants (5'UTR+3'UTR) (Total: 10)

GGenebody Level Haplotype Variants (Intron) (Total: 81)

External Link

Annotation (Repeats)

Annotation (SNP Array)