JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TSPAN33_chr7_129139707_129174699	0/0	c0004	852	1	0	1	0	0	0	copy fasta	TSPAN33	chr7	129139707	129174699
TSPAN3_chr15_77036404_77076109	1/0	c0001	762	2	0	0	1	0	0	copy fasta	TSPAN3	chr15	77036404	77076109
TSPAN3_chr15_77036404_77076109	0/0	c0002	762	1	0	0	1	0	0	copy fasta	TSPAN3	chr15	77036404	77076109
TSPAN4_chr11_837852_872111	0/1	c0001	717	365	75	63	169	15	42	copy fasta	TSPAN4	chr11	837852	872111
TSPAN4_chr11_837852_872111	0/0	c0002	717	13	8	5	0	0	0	copy fasta	TSPAN4	chr11	837852	872111
TSPAN4_chr11_837852_872111	0/0	c0003	717	3	1	1	0	1	0	copy fasta	TSPAN4	chr11	837852	872111
TSPAN4_chr11_837852_872111	0/0	c0004	717	2	0	0	2	0	0	copy fasta	TSPAN4	chr11	837852	872111
TSPAN4_chr11_837852_872111	1/0	c0005	717	2	1	0	0	0	0	copy fasta	TSPAN4	chr11	837852	872111
TSPAN4_chr11_837852_872111	0/0	c0006	717	2	2	0	0	0	0	copy fasta	TSPAN4	chr11	837852	872111
TSPAN4_chr11_837852_872111	0/0	c0007	717	1	1	0	0	0	0	copy fasta	TSPAN4	chr11	837852	872111
TSPAN4_chr11_837852_872111	0/0	c0008	717	1	0	1	0	0	0	copy fasta	TSPAN4	chr11	837852	872111
TSPAN4_chr11_837852_872111	0/0	c0009	717	1	0	1	0	0	0	copy fasta	TSPAN4	chr11	837852	872111
TSPAN4_chr11_837852_872111	0/0	c0010	717	1	0	1	0	0	0	copy fasta	TSPAN4	chr11	837852	872111
TSPAN4_chr11_837852_872111	0/0	c0011	717	1	0	0	1	0	0	copy fasta	TSPAN4	chr11	837852	872111
TSPAN4_chr11_837852_872111	0/0	c0012	717	1	0	0	1	0	0	copy fasta	TSPAN4	chr11	837852	872111
TSPAN4_chr11_837852_872111	0/0	c0013	717	1	0	0	1	0	0	copy fasta	TSPAN4	chr11	837852	872111
TSPAN5_chr4_98465367_98663611	1/1	c0001	807	204	56	46	68	8	24	copy fasta	TSPAN5	chr4	98465367	98663611
TSPAN5_chr4_98465367_98663611	0/0	c0002	807	30	28	2	0	0	0	copy fasta	TSPAN5	chr4	98465367	98663611
TSPAN5_chr4_98465367_98663611	0/0	c0003	807	2	2	0	0	0	0	copy fasta	TSPAN5	chr4	98465367	98663611
TSPAN6_chrX_100622108_100641806	1/0	c0001	738	303	74	57	133	7	31	copy fasta	TSPAN6	chrX	100622108	100641806
TSPAN6_chrX_100622108_100641806	0/1	c0002	738	11	1	6	0	2	1	copy fasta	TSPAN6	chrX	100622108	100641806
TSPAN6_chrX_100622108_100641806	0/0	c0003	738	4	3	0	1	0	0	copy fasta	TSPAN6	chrX	100622108	100641806
TSPAN7_chrX_38556542_38693918	1/1	c0001	750	207	49	36	87	9	24	copy fasta	TSPAN7	chrX	38556542	38693918
TSPAN7_chrX_38556542_38693918	0/0	c0002	750	9	9	0	0	0	0	copy fasta	TSPAN7	chrX	38556542	38693918
TSPAN7_chrX_38556542_38693918	0/0	c0003	750	6	6	0	0	0	0	copy fasta	TSPAN7	chrX	38556542	38693918
TSPAN7_chrX_38556542_38693918	0/0	c0004	751	1	0	0	1	0	0	copy fasta	TSPAN7	chrX	38556542	38693918
TSPAN8_chr12_71120096_71162999	1/1	c0001	714	178	80	27	41	11	17	copy fasta	TSPAN8	chr12	71120096	71162999
TSPAN8_chr12_71120096_71162999	0/0	c0002	714	89	3	15	53	5	13	copy fasta	TSPAN8	chr12	71120096	71162999
TSPAN8_chr12_71120096_71162999	0/0	c0003	714	87	5	17	54	0	11	copy fasta	TSPAN8	chr12	71120096	71162999
TSPAN8_chr12_71120096_71162999	0/0	c0004	714	36	1	5	28	0	2	copy fasta	TSPAN8	chr12	71120096	71162999
TSPAN8_chr12_71120096_71162999	0/0	c0005	714	9	9	0	0	0	0	copy fasta	TSPAN8	chr12	71120096	71162999
TSPAN8_chr12_71120096_71162999	0/0	c0006	714	9	0	0	9	0	0	copy fasta	TSPAN8	chr12	71120096	71162999
TSPAN8_chr12_71120096_71162999	0/0	c0007	714	2	0	0	0	0	2	copy fasta	TSPAN8	chr12	71120096	71162999
TSPAN8_chr12_71120096_71162999	0/0	c0008	714	2	2	0	0	0	0	copy fasta	TSPAN8	chr12	71120096	71162999
TSPAN8_chr12_71120096_71162999	0/0	c0009	714	1	0	0	0	0	1	copy fasta	TSPAN8	chr12	71120096	71162999
TSPAN8_chr12_71120096_71162999	0/0	c0010	714	1	0	0	1	0	0	copy fasta	TSPAN8	chr12	71120096	71162999
TSPAN9_chr12_3072379_3291559	1/1	c0001	720	237	68	47	83	10	27	copy fasta	TSPAN9	chr12	3072379	3291559
TSPAN9_chr12_3072379_3291559	0/0	c0002	720	34	14	3	12	3	2	copy fasta	TSPAN9	chr12	3072379	3291559
TSPAN9_chr12_3072379_3291559	0/0	c0003	720	7	1	3	0	1	2	copy fasta	TSPAN9	chr12	3072379	3291559
TSPAN9_chr12_3072379_3291559	0/0	c0004	720	4	3	1	0	0	0	copy fasta	TSPAN9	chr12	3072379	3291559
TSPAN9_chr12_3072379_3291559	0/0	c0005	720	3	3	0	0	0	0	copy fasta	TSPAN9	chr12	3072379	3291559
TSPAN9_chr12_3072379_3291559	0/0	c0006	720	1	1	0	0	0	0	copy fasta	TSPAN9	chr12	3072379	3291559
TSPAN9_chr12_3072379_3291559	0/0	c0007	720	1	0	0	1	0	0	copy fasta	TSPAN9	chr12	3072379	3291559
TSPAN9_chr12_3072379_3291559	0/0	c0008	720	1	0	0	0	0	1	copy fasta	TSPAN9	chr12	3072379	3291559
TSPEAR_chr21_44492893_44716572	1/0	c0001	2010	272	77	59	96	9	30	copy fasta	TSPEAR	chr21	44492893	44716572
TSPEAR_chr21_44492893_44716572	0/0	c0002	2010	3	3	0	0	0	0	copy fasta	TSPEAR	chr21	44492893	44716572
TSPEAR_chr21_44492893_44716572	0/0	c0003	2010	3	0	1	0	1	1	copy fasta	TSPEAR	chr21	44492893	44716572
TSPEAR_chr21_44492893_44716572	0/0	c0004	2010	2	2	0	0	0	0	copy fasta	TSPEAR	chr21	44492893	44716572
TSPEAR_chr21_44492893_44716572	0/1	c0005	2010	1	0	0	0	0	0	copy fasta	TSPEAR	chr21	44492893	44716572
TSPEAR_chr21_44492893_44716572	0/0	c0006	2010	1	1	0	0	0	0	copy fasta	TSPEAR	chr21	44492893	44716572