JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TSPOAP1_chr17_58296231_58333795	0/0	c0037	5574	1	1	0	0	0	0	copy fasta	TSPOAP1	chr17	58296231	58333795
TSPOAP1_chr17_58296231_58333795	0/0	c0038	5574	1	1	0	0	0	0	copy fasta	TSPOAP1	chr17	58296231	58333795
TSPOAP1_chr17_58296231_58333795	0/0	c0039	5574	1	1	0	0	0	0	copy fasta	TSPOAP1	chr17	58296231	58333795
TSPOAP1_chr17_58296231_58333795	0/0	c0040	5574	1	0	0	1	0	0	copy fasta	TSPOAP1	chr17	58296231	58333795
TSPOAP1_chr17_58296231_58333795	0/0	c0041	5574	1	0	0	1	0	0	copy fasta	TSPOAP1	chr17	58296231	58333795
TSPOAP1_chr17_58296231_58333795	0/0	c0042	5574	1	0	0	1	0	0	copy fasta	TSPOAP1	chr17	58296231	58333795
TSPOAP1_chr17_58296231_58333795	0/0	c0043	5574	1	0	1	0	0	0	copy fasta	TSPOAP1	chr17	58296231	58333795
TSPOAP1_chr17_58296231_58333795	0/0	c0044	5574	1	1	0	0	0	0	copy fasta	TSPOAP1	chr17	58296231	58333795
TSPOAP1_chr17_58296231_58333795	0/0	c0045	5574	1	1	0	0	0	0	copy fasta	TSPOAP1	chr17	58296231	58333795
TSPOAP1_chr17_58296231_58333795	0/0	c0046	5574	1	1	0	0	0	0	copy fasta	TSPOAP1	chr17	58296231	58333795
TSPOAP1_chr17_58296231_58333795	0/0	c0047	5574	1	0	0	0	0	1	copy fasta	TSPOAP1	chr17	58296231	58333795
TSPOAP1_chr17_58296231_58333795	0/0	c0048	5574	1	1	0	0	0	0	copy fasta	TSPOAP1	chr17	58296231	58333795
TSPOAP1_chr17_58296231_58333795	0/0	c0049	5574	1	1	0	0	0	0	copy fasta	TSPOAP1	chr17	58296231	58333795
TSPOAP1_chr17_58296231_58333795	0/0	c0050	5574	1	1	0	0	0	0	copy fasta	TSPOAP1	chr17	58296231	58333795
TSPOAP1_chr17_58296231_58333795	0/0	c0051	5574	1	0	1	0	0	0	copy fasta	TSPOAP1	chr17	58296231	58333795
TSPOAP1_chr17_58296231_58333795	0/0	c0052	5574	1	0	0	0	0	1	copy fasta	TSPOAP1	chr17	58296231	58333795
TSPOAP1_chr17_58296231_58333795	0/0	c0053	5574	1	0	0	1	0	0	copy fasta	TSPOAP1	chr17	58296231	58333795
TSPOAP1_chr17_58296231_58333795	0/0	c0054	5574	1	0	0	0	0	1	copy fasta	TSPOAP1	chr17	58296231	58333795
TSPOAP1_chr17_58296231_58333795	0/0	c0055	5574	1	1	0	0	0	0	copy fasta	TSPOAP1	chr17	58296231	58333795
TSPOAP1_chr17_58296231_58333795	0/0	c0056	5574	1	1	0	0	0	0	copy fasta	TSPOAP1	chr17	58296231	58333795
TSPOAP1_chr17_58296231_58333795	0/0	c0057	5574	1	1	0	0	0	0	copy fasta	TSPOAP1	chr17	58296231	58333795
TSPOAP1_chr17_58296231_58333795	0/0	c0058	5574	1	0	0	1	0	0	copy fasta	TSPOAP1	chr17	58296231	58333795
TSPOAP1_chr17_58296231_58333795	0/0	c0059	5574	1	1	0	0	0	0	copy fasta	TSPOAP1	chr17	58296231	58333795
TSPOAP1_chr17_58296231_58333795	0/0	c0060	5574	1	0	0	1	0	0	copy fasta	TSPOAP1	chr17	58296231	58333795
TSPOAP1_chr17_58296231_58333795	0/0	c0061	5574	1	1	0	0	0	0	copy fasta	TSPOAP1	chr17	58296231	58333795
TSPOAP1_chr17_58296231_58333795	0/0	c0062	5574	1	1	0	0	0	0	copy fasta	TSPOAP1	chr17	58296231	58333795
TSPOAP1_chr17_58296231_58333795	0/0	c0063	5574	1	0	0	0	0	1	copy fasta	TSPOAP1	chr17	58296231	58333795
TSPOAP1_chr17_58296231_58333795	0/0	c0064	5574	1	0	1	0	0	0	copy fasta	TSPOAP1	chr17	58296231	58333795
TSPOAP1_chr17_58296231_58333795	0/0	c0065	5574	1	1	0	0	0	0	copy fasta	TSPOAP1	chr17	58296231	58333795
TSPOAP1_chr17_58296231_58333795	0/0	c0066	5574	1	0	0	1	0	0	copy fasta	TSPOAP1	chr17	58296231	58333795
TSPOAP1_chr17_58296231_58333795	0/0	c0067	5574	1	0	0	1	0	0	copy fasta	TSPOAP1	chr17	58296231	58333795
TSPOAP1_chr17_58296231_58333795	0/0	c0068	5574	1	0	0	1	0	0	copy fasta	TSPOAP1	chr17	58296231	58333795
TSPOAP1_chr17_58296231_58333795	0/0	c0069	5574	1	1	0	0	0	0	copy fasta	TSPOAP1	chr17	58296231	58333795
TSPOAP1_chr17_58296231_58333795	0/0	c0070	5574	1	1	0	0	0	0	copy fasta	TSPOAP1	chr17	58296231	58333795
TSPOAP1_chr17_58296231_58333795	0/0	c0071	5574	1	1	0	0	0	0	copy fasta	TSPOAP1	chr17	58296231	58333795
TSPOAP1_chr17_58296231_58333795	0/0	c0072	5574	1	0	0	1	0	0	copy fasta	TSPOAP1	chr17	58296231	58333795
TSPOAP1_chr17_58296231_58333795	0/0	c0073	5574	1	1	0	0	0	0	copy fasta	TSPOAP1	chr17	58296231	58333795
TSPOAP1_chr17_58296231_58333795	0/0	c0074	5574	1	0	0	1	0	0	copy fasta	TSPOAP1	chr17	58296231	58333795
TSPOAP1_chr17_58296231_58333795	0/0	c0075	5574	1	0	0	1	0	0	copy fasta	TSPOAP1	chr17	58296231	58333795
TSPOAP1_chr17_58296231_58333795	0/0	c0076	5574	1	0	1	0	0	0	copy fasta	TSPOAP1	chr17	58296231	58333795
TSPOAP1_chr17_58296231_58333795	0/0	c0077	5574	1	0	0	0	0	1	copy fasta	TSPOAP1	chr17	58296231	58333795
TSPO_chr22_43146559_43168242	0/0	c0001	510	259	67	51	110	9	22	copy fasta	TSPO	chr22	43146559	43168242
TSPO_chr22_43146559_43168242	0/1	c0002	510	85	5	13	47	4	15	copy fasta	TSPO	chr22	43146559	43168242
TSPO_chr22_43146559_43168242	1/0	c0003	510	53	20	10	12	3	7	copy fasta	TSPO	chr22	43146559	43168242
TSPO_chr22_43146559_43168242	0/0	c0004	510	1	1	0	0	0	0	copy fasta	TSPO	chr22	43146559	43168242
TSPO_chr22_43146559_43168242	0/0	c0005	510	1	0	0	1	0	0	copy fasta	TSPO	chr22	43146559	43168242
TSPO_chr22_43146559_43168242	0/0	c0006	510	1	1	0	0	0	0	copy fasta	TSPO	chr22	43146559	43168242
TSPY10_chrY_9522880_9535676	0/0	c0001	927	1	0	0	1	0	0	copy fasta	TSPY10	chrY	9522880	9535676
TSPY1_chrY_9461955_9474749	0/0	c0001	927	7	1	1	1	0	4	copy fasta	TSPY1	chrY	9461955	9474749
TSPY1_chrY_9461955_9474749	0/0	c0002	927	4	0	1	0	2	1	copy fasta	TSPY1	chrY	9461955	9474749