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geneid	100289087
ensemblid	ENSG00000236424.7
hgncid	37473
symbol	TSPY10
name	testis specific protein Y-linked 10
refseq_nuc	NM_001282469.3
refseq_prot	NP_001269398.1
ensembl_nuc	ENST00000428845.6
ensembl_prot	ENSP00000406407.2
mane_status	MANE Select
chr	chrY
start	9527880
end	9530676
strand	+
ver	v1.2
region	chrY:9527880-9530676
region5000	chrY:9522880-9535676
regionname0	TSPY10_chrY_9527880_9530676
regionname5000	TSPY10_chrY_9522880_9535676

ahapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	alen	total	AFR	AMR	EAS	EUR	SAS	JPT	regionname	genename	aa	chr	start	end
a0001	0/0	308	1	0	0	1	0	0	1	TSPY10_chrY_9522880_9535676	TSPY10	copy fasta	chrY	9522880	9535676

chapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	clen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	cseq	chr	start	end
c0001	0/0	927	1	0	0	1	0	0	TSPY10_chrY_9522880_9535676	TSPY10	copy fasta	chrY	9522880	9535676

thapid	grch38 chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	tlen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	tseq	chr	start	end
t0001	0/0	236	1	0	0	1	0	0	TSPY10_chrY_9522880_9535676	TSPY10	copy fasta	chrY	9522880	9535676

ghapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	chr	start	end
g0001	0/0	1	0	0	1	0	0	TSPY10_chrY_9522880_9535676	TSPY10	chrY	9522880	9535676

achapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	clen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	cseq	chr	start	end
a0001c0001	0/0	927	1	0	0	1	0	0	TSPY10_chrY_9522880_9535676	TSPY10	copy fasta	chrY	9522880	9535676

acthapid	grch38 chm13v2	tlen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	tseq	chr	start	end
a0001c0001t0001	0/0	1162	1	0	0	1	0	0	TSPY10_chrY_9522880_9535676	TSPY10	copy fasta	chrY	9522880	9535676

actghapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	chr	start	end
a0001c0001t0001g0001	0/0	1	0	0	1	0	0	TSPY10_chrY_9522880_9535676	TSPY10	chrY	9522880	9535676

sampleid	ID haplotypeid	ahapid	chapid	thapid	ghapid	gpopname	popname	regionname	genename	chr	start	end
NA19089	hp2	a0001	c0001	t0001	g0001	EAS	JPT	TSPY10_chrY_9522880_9535676	TSPY10	chrY	9522880	9535676

chr:pos	ref	alt	# # of ahapid:amino-acid(protein) level	ahapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	distance	status	chr	pos

chr:pos	ref	alt	# # of chapid	chapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	distance	status	chr	pos
chrY:9529767	G G	A A	1	a0001c0001 a0001c0001	1	NA19089.hp2 NA19089.hp2	synonymous_variant	LOW	c.900G>A c.900G>A	p.Thr300Thr p.Thr300Thr	TSPY10	ENSG00000236424.7	transcript	ENST00000428845.6	protein_coding	5/6	946/1161	900/927	300/308			chrY	9529767

chr:pos	ref	alt	# # of thapid:transcript level	thapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	distance	status	chr	pos
chrY:9530575	C C	CT CT	1	a0001c0001t0001 a0001c0001t0001	1	NA19089.hp2 NA19089.hp2	3_prime_UTR_variant	MODIFIER	c.89dupT c.89dupT		TSPY10	ENSG00000236424.7	transcript	ENST00000428845.6	protein_coding	6/6				90	INFO_REALIGN_3_PRIME	chrY	9530575
chrY:9530601	C C	G G	1	a0001c0001t0001 a0001c0001t0001	1	NA19089.hp2 NA19089.hp2	3_prime_UTR_variant	MODIFIER	c.113C>G c.113C>G		TSPY10	ENSG00000236424.7	transcript	ENST00000428845.6	protein_coding	6/6				113		chrY	9530601

chr:pos	ref	alt	# # of ghapid:genebody level	ghapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	genebody_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	distance	status	chr	pos
chrY:9530052	G G	C C	1	a0001c0001t0001g0001 a0001c0001t0001g0001	1	NA19089.hp2 NA19089.hp2	intron_variant	MODIFIER	c.904+281G>C c.904+281G>C		TSPY10	ENSG00000236424.7	transcript	ENST00000428845.6	protein_coding	5/5						chrY	9530052
chrY:9530126	G G	A A	1	a0001c0001t0001g0001 a0001c0001t0001g0001	1	NA19089.hp2 NA19089.hp2	intron_variant	MODIFIER	c.905-340G>A c.905-340G>A		TSPY10	ENSG00000236424.7	transcript	ENST00000428845.6	protein_coding	5/5						chrY	9530126