JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TTC21A_chr3_39102680_39143900	0/0	c0002	3942	108	32	21	43	4	8	copy fasta	TTC21A	chr3	39102680	39143900
TTC21A_chr3_39102680_39143900	0/0	c0003	3942	42	11	2	28	0	1	copy fasta	TTC21A	chr3	39102680	39143900
TTC21A_chr3_39102680_39143900	0/0	c0004	3942	37	14	6	14	0	3	copy fasta	TTC21A	chr3	39102680	39143900
TTC21A_chr3_39102680_39143900	0/0	c0005	3942	24	15	1	5	2	1	copy fasta	TTC21A	chr3	39102680	39143900
TTC21A_chr3_39102680_39143900	0/0	c0006	3942	5	1	2	0	0	2	copy fasta	TTC21A	chr3	39102680	39143900
TTC21A_chr3_39102680_39143900	0/0	c0007	3942	4	3	1	0	0	0	copy fasta	TTC21A	chr3	39102680	39143900
TTC21A_chr3_39102680_39143900	0/0	c0008	3942	3	0	3	0	0	0	copy fasta	TTC21A	chr3	39102680	39143900
TTC21A_chr3_39102680_39143900	0/0	c0009	3942	3	0	1	0	1	1	copy fasta	TTC21A	chr3	39102680	39143900
TTC21A_chr3_39102680_39143900	0/0	c0010	3942	3	3	0	0	0	0	copy fasta	TTC21A	chr3	39102680	39143900
TTC21A_chr3_39102680_39143900	0/0	c0011	3942	2	2	0	0	0	0	copy fasta	TTC21A	chr3	39102680	39143900
TTC21A_chr3_39102680_39143900	0/0	c0012	3942	2	2	0	0	0	0	copy fasta	TTC21A	chr3	39102680	39143900
TTC21A_chr3_39102680_39143900	0/0	c0013	3942	2	0	1	0	1	0	copy fasta	TTC21A	chr3	39102680	39143900
TTC21A_chr3_39102680_39143900	0/0	c0014	3942	2	2	0	0	0	0	copy fasta	TTC21A	chr3	39102680	39143900
TTC21A_chr3_39102680_39143900	0/0	c0015	3942	1	1	0	0	0	0	copy fasta	TTC21A	chr3	39102680	39143900
TTC21A_chr3_39102680_39143900	0/0	c0016	3942	1	0	0	1	0	0	copy fasta	TTC21A	chr3	39102680	39143900
TTC21A_chr3_39102680_39143900	0/0	c0017	3942	1	1	0	0	0	0	copy fasta	TTC21A	chr3	39102680	39143900
TTC21A_chr3_39102680_39143900	0/0	c0018	3942	1	0	0	1	0	0	copy fasta	TTC21A	chr3	39102680	39143900
TTC21A_chr3_39102680_39143900	0/0	c0019	3942	1	1	0	0	0	0	copy fasta	TTC21A	chr3	39102680	39143900
TTC21A_chr3_39102680_39143900	0/0	c0020	3942	1	1	0	0	0	0	copy fasta	TTC21A	chr3	39102680	39143900
TTC21A_chr3_39102680_39143900	0/0	c0021	3942	1	0	1	0	0	0	copy fasta	TTC21A	chr3	39102680	39143900
TTC21A_chr3_39102680_39143900	1/0	c0022	3942	1	0	0	0	0	0	copy fasta	TTC21A	chr3	39102680	39143900
TTC21A_chr3_39102680_39143900	0/0	c0023	3942	1	0	0	0	0	1	copy fasta	TTC21A	chr3	39102680	39143900
TTC21A_chr3_39102680_39143900	0/0	c0024	3942	1	0	1	0	0	0	copy fasta	TTC21A	chr3	39102680	39143900
TTC21A_chr3_39102680_39143900	0/0	c0025	3942	1	1	0	0	0	0	copy fasta	TTC21A	chr3	39102680	39143900
TTC21A_chr3_39102680_39143900	0/0	c0026	3942	1	0	0	0	0	1	copy fasta	TTC21A	chr3	39102680	39143900
TTC21B_chr2_165868362_165958776	0/0	c0001	3951	235	37	39	131	4	24	copy fasta	TTC21B	chr2	165868362	165958776
TTC21B_chr2_165868362_165958776	0/1	c0002	3951	74	7	16	36	3	11	copy fasta	TTC21B	chr2	165868362	165958776
TTC21B_chr2_165868362_165958776	0/0	c0003	3951	30	0	10	20	0	0	copy fasta	TTC21B	chr2	165868362	165958776
TTC21B_chr2_165868362_165958776	0/0	c0004	3951	13	13	0	0	0	0	copy fasta	TTC21B	chr2	165868362	165958776
TTC21B_chr2_165868362_165958776	0/0	c0005	3951	11	9	2	0	0	0	copy fasta	TTC21B	chr2	165868362	165958776
TTC21B_chr2_165868362_165958776	0/0	c0006	3951	5	0	4	0	1	0	copy fasta	TTC21B	chr2	165868362	165958776
TTC21B_chr2_165868362_165958776	0/0	c0007	3951	5	4	1	0	0	0	copy fasta	TTC21B	chr2	165868362	165958776
TTC21B_chr2_165868362_165958776	0/0	c0008	3951	4	4	0	0	0	0	copy fasta	TTC21B	chr2	165868362	165958776
TTC21B_chr2_165868362_165958776	0/0	c0009	3951	3	3	0	0	0	0	copy fasta	TTC21B	chr2	165868362	165958776
TTC21B_chr2_165868362_165958776	1/0	c0010	3951	3	2	0	0	0	0	copy fasta	TTC21B	chr2	165868362	165958776
TTC21B_chr2_165868362_165958776	0/0	c0011	3951	2	2	0	0	0	0	copy fasta	TTC21B	chr2	165868362	165958776
TTC21B_chr2_165868362_165958776	0/0	c0012	3951	2	2	0	0	0	0	copy fasta	TTC21B	chr2	165868362	165958776
TTC21B_chr2_165868362_165958776	0/0	c0013	3951	2	2	0	0	0	0	copy fasta	TTC21B	chr2	165868362	165958776
TTC21B_chr2_165868362_165958776	0/0	c0014	3951	2	2	0	0	0	0	copy fasta	TTC21B	chr2	165868362	165958776
TTC21B_chr2_165868362_165958776	0/0	c0015	3951	2	1	1	0	0	0	copy fasta	TTC21B	chr2	165868362	165958776
TTC21B_chr2_165868362_165958776	0/0	c0016	3951	1	1	0	0	0	0	copy fasta	TTC21B	chr2	165868362	165958776
TTC21B_chr2_165868362_165958776	0/0	c0017	3951	1	0	0	1	0	0	copy fasta	TTC21B	chr2	165868362	165958776
TTC21B_chr2_165868362_165958776	0/0	c0018	3951	1	1	0	0	0	0	copy fasta	TTC21B	chr2	165868362	165958776
TTC21B_chr2_165868362_165958776	0/0	c0019	3951	1	0	1	0	0	0	copy fasta	TTC21B	chr2	165868362	165958776
TTC21B_chr2_165868362_165958776	0/0	c0020	3951	1	0	0	1	0	0	copy fasta	TTC21B	chr2	165868362	165958776
TTC21B_chr2_165868362_165958776	0/0	c0021	3951	1	1	0	0	0	0	copy fasta	TTC21B	chr2	165868362	165958776
TTC21B_chr2_165868362_165958776	0/0	c0022	3951	1	0	0	0	0	1	copy fasta	TTC21B	chr2	165868362	165958776
TTC21B_chr2_165868362_165958776	0/0	c0023	3951	1	0	0	0	0	1	copy fasta	TTC21B	chr2	165868362	165958776
TTC21B_chr2_165868362_165958776	0/0	c0024	3951	1	1	0	0	0	0	copy fasta	TTC21B	chr2	165868362	165958776
TTC21B_chr2_165868362_165958776	0/0	c0025	3951	1	0	0	1	0	0	copy fasta	TTC21B	chr2	165868362	165958776