JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TTC21B_chr2_165868362_165958776	0/0	c0026	3951	1	0	0	1	0	0	copy fasta	TTC21B	chr2	165868362	165958776
TTC21B_chr2_165868362_165958776	0/0	c0027	3951	1	0	0	0	0	1	copy fasta	TTC21B	chr2	165868362	165958776
TTC21B_chr2_165868362_165958776	0/0	c0028	3951	1	1	0	0	0	0	copy fasta	TTC21B	chr2	165868362	165958776
TTC21B_chr2_165868362_165958776	0/0	c0029	3951	1	0	0	1	0	0	copy fasta	TTC21B	chr2	165868362	165958776
TTC21B_chr2_165868362_165958776	0/0	c0030	3951	1	1	0	0	0	0	copy fasta	TTC21B	chr2	165868362	165958776
TTC22_chr1_54774712_54806323	0/1	c0001	1710	245	61	38	105	8	32	copy fasta	TTC22	chr1	54774712	54806323
TTC22_chr1_54774712_54806323	0/0	c0002	1710	72	3	17	43	5	4	copy fasta	TTC22	chr1	54774712	54806323
TTC22_chr1_54774712_54806323	0/0	c0003	1710	30	7	5	12	2	4	copy fasta	TTC22	chr1	54774712	54806323
TTC22_chr1_54774712_54806323	0/0	c0004	1710	20	0	2	18	0	0	copy fasta	TTC22	chr1	54774712	54806323
TTC22_chr1_54774712_54806323	0/0	c0005	1710	15	1	7	2	2	3	copy fasta	TTC22	chr1	54774712	54806323
TTC22_chr1_54774712_54806323	0/0	c0006	1710	9	0	0	9	0	0	copy fasta	TTC22	chr1	54774712	54806323
TTC22_chr1_54774712_54806323	0/0	c0007	1710	9	0	0	9	0	0	copy fasta	TTC22	chr1	54774712	54806323
TTC22_chr1_54774712_54806323	0/0	c0008	1710	7	0	1	6	0	0	copy fasta	TTC22	chr1	54774712	54806323
TTC22_chr1_54774712_54806323	0/0	c0009	1710	3	3	0	0	0	0	copy fasta	TTC22	chr1	54774712	54806323
TTC22_chr1_54774712_54806323	0/0	c0010	1710	3	0	0	3	0	0	copy fasta	TTC22	chr1	54774712	54806323
TTC22_chr1_54774712_54806323	0/0	c0011	1710	3	0	0	3	0	0	copy fasta	TTC22	chr1	54774712	54806323
TTC22_chr1_54774712_54806323	0/0	c0012	1710	3	3	0	0	0	0	copy fasta	TTC22	chr1	54774712	54806323
TTC22_chr1_54774712_54806323	0/0	c0013	1710	2	2	0	0	0	0	copy fasta	TTC22	chr1	54774712	54806323
TTC22_chr1_54774712_54806323	0/0	c0014	1710	2	0	0	1	0	1	copy fasta	TTC22	chr1	54774712	54806323
TTC22_chr1_54774712_54806323	0/0	c0015	1710	2	2	0	0	0	0	copy fasta	TTC22	chr1	54774712	54806323
TTC22_chr1_54774712_54806323	0/0	c0016	1710	2	1	1	0	0	0	copy fasta	TTC22	chr1	54774712	54806323
TTC22_chr1_54774712_54806323	0/0	c0017	1710	2	1	1	0	0	0	copy fasta	TTC22	chr1	54774712	54806323
TTC22_chr1_54774712_54806323	0/0	c0018	1710	2	0	1	0	1	0	copy fasta	TTC22	chr1	54774712	54806323
TTC22_chr1_54774712_54806323	0/0	c0019	1710	1	0	0	1	0	0	copy fasta	TTC22	chr1	54774712	54806323
TTC22_chr1_54774712_54806323	0/0	c0020	1710	1	0	0	1	0	0	copy fasta	TTC22	chr1	54774712	54806323
TTC22_chr1_54774712_54806323	0/0	c0021	1710	1	0	0	1	0	0	copy fasta	TTC22	chr1	54774712	54806323
TTC22_chr1_54774712_54806323	0/0	c0022	1710	1	0	1	0	0	0	copy fasta	TTC22	chr1	54774712	54806323
TTC22_chr1_54774712_54806323	0/0	c0023	1710	1	1	0	0	0	0	copy fasta	TTC22	chr1	54774712	54806323
TTC22_chr1_54774712_54806323	0/0	c0024	1710	1	1	0	0	0	0	copy fasta	TTC22	chr1	54774712	54806323
TTC22_chr1_54774712_54806323	1/0	c0025	1710	1	0	0	0	0	0	copy fasta	TTC22	chr1	54774712	54806323
TTC22_chr1_54774712_54806323	0/0	c0026	1710	1	1	0	0	0	0	copy fasta	TTC22	chr1	54774712	54806323
TTC22_chr1_54774712_54806323	0/0	c0027	1710	1	0	0	1	0	0	copy fasta	TTC22	chr1	54774712	54806323
TTC22_chr1_54774712_54806323	0/0	c0028	1710	1	0	1	0	0	0	copy fasta	TTC22	chr1	54774712	54806323
TTC22_chr1_54774712_54806323	0/0	c0029	1710	1	1	0	0	0	0	copy fasta	TTC22	chr1	54774712	54806323
TTC22_chr1_54774712_54806323	0/0	c0030	1710	1	0	0	1	0	0	copy fasta	TTC22	chr1	54774712	54806323
TTC22_chr1_54774712_54806323	0/0	c0031	1710	1	0	1	0	0	0	copy fasta	TTC22	chr1	54774712	54806323
TTC22_chr1_54774712_54806323	0/0	c0032	1710	1	0	1	0	0	0	copy fasta	TTC22	chr1	54774712	54806323
TTC22_chr1_54774712_54806323	0/0	c0033	1710	1	1	0	0	0	0	copy fasta	TTC22	chr1	54774712	54806323
TTC22_chr1_54774712_54806323	0/0	c0034	1710	1	1	0	0	0	0	copy fasta	TTC22	chr1	54774712	54806323
TTC22_chr1_54774712_54806323	0/0	c0035	1710	1	0	0	1	0	0	copy fasta	TTC22	chr1	54774712	54806323
TTC22_chr1_54774712_54806323	0/0	c0036	1710	1	0	1	0	0	0	copy fasta	TTC22	chr1	54774712	54806323
TTC22_chr1_54774712_54806323	0/0	c0037	1710	1	0	0	1	0	0	copy fasta	TTC22	chr1	54774712	54806323
TTC23L_chr5_34834164_34905511	1/0	c0001	1086	188	2	35	119	8	23	copy fasta	TTC23L	chr5	34834164	34905511
TTC23L_chr5_34834164_34905511	0/1	c0002	1086	154	63	36	29	7	18	copy fasta	TTC23L	chr5	34834164	34905511
TTC23L_chr5_34834164_34905511	0/0	c0003	1086	7	0	1	5	0	1	copy fasta	TTC23L	chr5	34834164	34905511
TTC23L_chr5_34834164_34905511	0/0	c0004	1086	5	5	0	0	0	0	copy fasta	TTC23L	chr5	34834164	34905511
TTC23L_chr5_34834164_34905511	0/0	c0005	1086	5	1	2	2	0	0	copy fasta	TTC23L	chr5	34834164	34905511
TTC23L_chr5_34834164_34905511	0/0	c0006	1086	5	4	1	0	0	0	copy fasta	TTC23L	chr5	34834164	34905511
TTC23L_chr5_34834164_34905511	0/0	c0007	1086	5	0	1	2	0	2	copy fasta	TTC23L	chr5	34834164	34905511
TTC23L_chr5_34834164_34905511	0/0	c0008	1086	4	4	0	0	0	0	copy fasta	TTC23L	chr5	34834164	34905511