JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TTC38_chr22_46263008_46299008	0/1	c0001	1410	145	28	43	39	10	24	copy fasta	TTC38	chr22	46263008	46299008
TTC38_chr22_46263008_46299008	0/0	c0002	1410	43	33	6	0	0	4	copy fasta	TTC38	chr22	46263008	46299008
TTC38_chr22_46263008_46299008	0/0	c0003	1410	11	10	1	0	0	0	copy fasta	TTC38	chr22	46263008	46299008
TTC38_chr22_46263008_46299008	0/0	c0004	1410	8	1	3	0	2	2	copy fasta	TTC38	chr22	46263008	46299008
TTC38_chr22_46263008_46299008	0/0	c0005	1410	5	5	0	0	0	0	copy fasta	TTC38	chr22	46263008	46299008
TTC38_chr22_46263008_46299008	0/0	c0006	1410	3	3	0	0	0	0	copy fasta	TTC38	chr22	46263008	46299008
TTC38_chr22_46263008_46299008	0/0	c0007	1410	2	2	0	0	0	0	copy fasta	TTC38	chr22	46263008	46299008
TTC38_chr22_46263008_46299008	0/0	c0008	1410	1	1	0	0	0	0	copy fasta	TTC38	chr22	46263008	46299008
TTC38_chr22_46263008_46299008	0/0	c0009	1410	1	1	0	0	0	0	copy fasta	TTC38	chr22	46263008	46299008
TTC38_chr22_46263008_46299008	0/0	c0010	1410	1	0	1	0	0	0	copy fasta	TTC38	chr22	46263008	46299008
TTC38_chr22_46263008_46299008	0/0	c0011	1410	1	0	0	1	0	0	copy fasta	TTC38	chr22	46263008	46299008
TTC38_chr22_46263008_46299008	0/0	c0012	1410	1	1	0	0	0	0	copy fasta	TTC38	chr22	46263008	46299008
TTC38_chr22_46263008_46299008	0/0	c0013	1410	1	0	0	0	0	1	copy fasta	TTC38	chr22	46263008	46299008
TTC38_chr22_46263008_46299008	0/0	c0014	1410	1	0	0	0	0	1	copy fasta	TTC38	chr22	46263008	46299008
TTC38_chr22_46263008_46299008	0/0	c0015	1410	1	1	0	0	0	0	copy fasta	TTC38	chr22	46263008	46299008
TTC38_chr22_46263008_46299008	0/0	c0016	1410	1	0	0	1	0	0	copy fasta	TTC38	chr22	46263008	46299008
TTC38_chr22_46263008_46299008	0/0	c0017	1410	1	0	0	1	0	0	copy fasta	TTC38	chr22	46263008	46299008
TTC38_chr22_46263008_46299008	1/0	c0018	1410	1	0	0	0	0	0	copy fasta	TTC38	chr22	46263008	46299008
TTC38_chr22_46263008_46299008	0/0	c0019	1410	1	1	0	0	0	0	copy fasta	TTC38	chr22	46263008	46299008
TTC38_chr22_46263008_46299008	0/0	c0020	1410	1	1	0	0	0	0	copy fasta	TTC38	chr22	46263008	46299008
TTC38_chr22_46263008_46299008	0/0	c0021	1410	1	1	0	0	0	0	copy fasta	TTC38	chr22	46263008	46299008
TTC38_chr22_46263008_46299008	0/0	c0022	1410	1	1	0	0	0	0	copy fasta	TTC38	chr22	46263008	46299008
TTC39A_chr1_51282258_51335562	1/1	c0001	1734	286	80	55	111	12	26	copy fasta	TTC39A	chr1	51282258	51335562
TTC39A_chr1_51282258_51335562	0/0	c0002	1734	10	2	5	0	1	2	copy fasta	TTC39A	chr1	51282258	51335562
TTC39A_chr1_51282258_51335562	0/0	c0003	1734	6	0	3	0	1	2	copy fasta	TTC39A	chr1	51282258	51335562
TTC39A_chr1_51282258_51335562	0/0	c0004	1734	3	0	1	0	2	0	copy fasta	TTC39A	chr1	51282258	51335562
TTC39A_chr1_51282258_51335562	0/0	c0005	1734	2	0	0	0	0	2	copy fasta	TTC39A	chr1	51282258	51335562
TTC39A_chr1_51282258_51335562	0/0	c0006	1734	2	0	0	2	0	0	copy fasta	TTC39A	chr1	51282258	51335562
TTC39A_chr1_51282258_51335562	0/0	c0007	1734	1	0	0	1	0	0	copy fasta	TTC39A	chr1	51282258	51335562
TTC39B_chr9_15158622_15312216	0/1	c0001	1851	173	49	27	67	8	21	copy fasta	TTC39B	chr9	15158622	15312216
TTC39B_chr9_15158622_15312216	1/0	c0002	1851	60	10	15	14	5	15	copy fasta	TTC39B	chr9	15158622	15312216
TTC39B_chr9_15158622_15312216	0/0	c0003	1851	8	7	1	0	0	0	copy fasta	TTC39B	chr9	15158622	15312216
TTC39B_chr9_15158622_15312216	0/0	c0004	1851	7	7	0	0	0	0	copy fasta	TTC39B	chr9	15158622	15312216
TTC39B_chr9_15158622_15312216	0/0	c0005	1851	5	5	0	0	0	0	copy fasta	TTC39B	chr9	15158622	15312216
TTC39B_chr9_15158622_15312216	0/0	c0006	1851	3	3	0	0	0	0	copy fasta	TTC39B	chr9	15158622	15312216
TTC39B_chr9_15158622_15312216	0/0	c0007	1851	2	0	2	0	0	0	copy fasta	TTC39B	chr9	15158622	15312216
TTC39B_chr9_15158622_15312216	0/0	c0008	1851	1	0	0	1	0	0	copy fasta	TTC39B	chr9	15158622	15312216
TTC39B_chr9_15158622_15312216	0/0	c0009	1851	1	0	1	0	0	0	copy fasta	TTC39B	chr9	15158622	15312216
TTC39B_chr9_15158622_15312216	0/0	c0010	1851	1	1	0	0	0	0	copy fasta	TTC39B	chr9	15158622	15312216
TTC39B_chr9_15158622_15312216	0/0	c0011	1851	1	0	0	0	1	0	copy fasta	TTC39B	chr9	15158622	15312216
TTC39C_chr18_24009754_24140600	0/1	c0001	1752	316	82	57	132	10	34	copy fasta	TTC39C	chr18	24009754	24140600
TTC39C_chr18_24009754_24140600	0/0	c0002	1752	6	6	0	0	0	0	copy fasta	TTC39C	chr18	24009754	24140600
TTC39C_chr18_24009754_24140600	1/0	c0003	1752	3	2	0	0	0	0	copy fasta	TTC39C	chr18	24009754	24140600
TTC39C_chr18_24009754_24140600	0/0	c0004	1752	1	0	1	0	0	0	copy fasta	TTC39C	chr18	24009754	24140600
TTC39C_chr18_24009754_24140600	0/0	c0005	1752	1	1	0	0	0	0	copy fasta	TTC39C	chr18	24009754	24140600
TTC39C_chr18_24009754_24140600	0/0	c0006	1752	1	1	0	0	0	0	copy fasta	TTC39C	chr18	24009754	24140600
TTC3_chr21_37068254_37208107	0/0	c0001	6078	99	20	12	59	1	7	copy fasta	TTC3	chr21	37068254	37208107
TTC3_chr21_37068254_37208107	1/1	c0002	6078	72	3	22	30	5	10	copy fasta	TTC3	chr21	37068254	37208107
TTC3_chr21_37068254_37208107	0/0	c0003	6078	54	16	6	32	0	0	copy fasta	TTC3	chr21	37068254	37208107
TTC3_chr21_37068254_37208107	0/0	c0004	6078	39	14	15	10	0	0	copy fasta	TTC3	chr21	37068254	37208107