JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TTN_chr2_178739405_178812423	0/0	c0086	16815	1	0	0	1	0	0	copy fasta	TTN	chr2	178739405	178812423
TTN_chr2_178739405_178812423	0/0	c0087	16815	1	0	0	1	0	0	copy fasta	TTN	chr2	178739405	178812423
TTN_chr2_178739405_178812423	0/0	c0088	16815	1	0	0	1	0	0	copy fasta	TTN	chr2	178739405	178812423
TTN_chr2_178739405_178812423	0/0	c0089	16815	1	0	0	1	0	0	copy fasta	TTN	chr2	178739405	178812423
TTN_chr2_178739405_178812423	0/0	c0090	16815	1	0	0	1	0	0	copy fasta	TTN	chr2	178739405	178812423
TTN_chr2_178739405_178812423	0/0	c0091	16815	1	1	0	0	0	0	copy fasta	TTN	chr2	178739405	178812423
TTN_chr2_178739405_178812423	0/0	c0092	16815	1	0	0	1	0	0	copy fasta	TTN	chr2	178739405	178812423
TTN_chr2_178739405_178812423	0/0	c0093	16815	1	0	0	1	0	0	copy fasta	TTN	chr2	178739405	178812423
TTN_chr2_178739405_178812423	0/0	c0094	16815	1	0	0	1	0	0	copy fasta	TTN	chr2	178739405	178812423
TTN_chr2_178739405_178812423	0/0	c0095	16815	1	1	0	0	0	0	copy fasta	TTN	chr2	178739405	178812423
TTN_chr2_178739405_178812423	0/0	c0096	16815	1	0	0	1	0	0	copy fasta	TTN	chr2	178739405	178812423
TTN_chr2_178739405_178812423	0/0	c0097	16815	1	0	0	0	0	1	copy fasta	TTN	chr2	178739405	178812423
TTN_chr2_178739405_178812423	0/0	c0098	16815	1	1	0	0	0	0	copy fasta	TTN	chr2	178739405	178812423
TTN_chr2_178739405_178812423	0/0	c0099	16815	1	1	0	0	0	0	copy fasta	TTN	chr2	178739405	178812423
TTN_chr2_178739405_178812423	0/0	c0100	16815	1	0	0	1	0	0	copy fasta	TTN	chr2	178739405	178812423
TTN_chr2_178739405_178812423	0/0	c0101	16815	1	1	0	0	0	0	copy fasta	TTN	chr2	178739405	178812423
TTN_chr2_178739405_178812423	0/0	c0102	16815	1	1	0	0	0	0	copy fasta	TTN	chr2	178739405	178812423
TTN_chr2_178739405_178812423	0/0	c0103	16815	1	0	1	0	0	0	copy fasta	TTN	chr2	178739405	178812423
TTPAL_chr20_44470874_44499603	1/0	c0001	1029	287	63	57	121	14	31	copy fasta	TTPAL	chr20	44470874	44499603
TTPAL_chr20_44470874_44499603	0/1	c0002	1029	23	5	10	0	2	5	copy fasta	TTPAL	chr20	44470874	44499603
TTPAL_chr20_44470874_44499603	0/0	c0003	1029	8	8	0	0	0	0	copy fasta	TTPAL	chr20	44470874	44499603
TTPAL_chr20_44470874_44499603	0/0	c0004	1029	5	5	0	0	0	0	copy fasta	TTPAL	chr20	44470874	44499603
TTPAL_chr20_44470874_44499603	0/0	c0005	1029	4	4	0	0	0	0	copy fasta	TTPAL	chr20	44470874	44499603
TTPAL_chr20_44470874_44499603	0/0	c0006	1029	1	1	0	0	0	0	copy fasta	TTPAL	chr20	44470874	44499603
TTPAL_chr20_44470874_44499603	0/0	c0007	1029	1	1	0	0	0	0	copy fasta	TTPAL	chr20	44470874	44499603
TTPAL_chr20_44470874_44499603	0/0	c0008	1029	1	0	0	1	0	0	copy fasta	TTPAL	chr20	44470874	44499603
TTPAL_chr20_44470874_44499603	0/0	c0009	1029	1	0	0	1	0	0	copy fasta	TTPAL	chr20	44470874	44499603
TTPAL_chr20_44470874_44499603	0/0	c0010	1029	1	0	1	0	0	0	copy fasta	TTPAL	chr20	44470874	44499603
TTPAL_chr20_44470874_44499603	0/0	c0011	1029	1	0	0	1	0	0	copy fasta	TTPAL	chr20	44470874	44499603
TTPAL_chr20_44470874_44499603	0/0	c0012	1029	1	1	0	0	0	0	copy fasta	TTPAL	chr20	44470874	44499603
TTPA_chr8_63054488_63091053	1/1	c0001	837	416	84	73	197	16	44	copy fasta	TTPA	chr8	63054488	63091053
TTPA_chr8_63054488_63091053	0/0	c0002	837	8	8	0	0	0	0	copy fasta	TTPA	chr8	63054488	63091053
TTPA_chr8_63054488_63091053	0/0	c0003	837	3	0	0	3	0	0	copy fasta	TTPA	chr8	63054488	63091053
TTPA_chr8_63054488_63091053	0/0	c0004	837	3	2	1	0	0	0	copy fasta	TTPA	chr8	63054488	63091053
TTPA_chr8_63054488_63091053	0/0	c0005	837	1	0	0	1	0	0	copy fasta	TTPA	chr8	63054488	63091053
TTPA_chr8_63054488_63091053	0/0	c0006	837	1	0	0	1	0	0	copy fasta	TTPA	chr8	63054488	63091053
TTR_chr18_31586877_31603821	1/1	c0001	444	391	90	69	184	10	36	copy fasta	TTR	chr18	31586877	31603821
TTR_chr18_31586877_31603821	0/0	c0002	444	7	1	4	0	2	0	copy fasta	TTR	chr18	31586877	31603821
TTR_chr18_31586877_31603821	0/0	c0003	444	4	0	1	3	0	0	copy fasta	TTR	chr18	31586877	31603821
TTR_chr18_31586877_31603821	0/0	c0004	444	3	0	0	3	0	0	copy fasta	TTR	chr18	31586877	31603821
TTR_chr18_31586877_31603821	0/0	c0005	444	3	0	0	3	0	0	copy fasta	TTR	chr18	31586877	31603821
TTR_chr18_31586877_31603821	0/0	c0006	444	2	1	0	1	0	0	copy fasta	TTR	chr18	31586877	31603821
TTYH1_chr19_54410464_54441904	0/1	c0001	1353	180	19	42	84	12	22	copy fasta	TTYH1	chr19	54410464	54441904
TTYH1_chr19_54410464_54441904	0/0	c0002	1353	70	41	6	16	0	7	copy fasta	TTYH1	chr19	54410464	54441904
TTYH1_chr19_54410464_54441904	0/0	c0003	1353	50	14	13	14	3	6	copy fasta	TTYH1	chr19	54410464	54441904
TTYH1_chr19_54410464_54441904	0/0	c0004	1353	9	1	5	0	0	3	copy fasta	TTYH1	chr19	54410464	54441904
TTYH1_chr19_54410464_54441904	0/0	c0005	1353	4	4	0	0	0	0	copy fasta	TTYH1	chr19	54410464	54441904
TTYH1_chr19_54410464_54441904	0/0	c0006	1353	4	0	1	3	0	0	copy fasta	TTYH1	chr19	54410464	54441904
TTYH1_chr19_54410464_54441904	0/0	c0007	1353	2	0	0	0	0	2	copy fasta	TTYH1	chr19	54410464	54441904
TTYH1_chr19_54410464_54441904	0/0	c0008	1353	1	0	0	1	0	0	copy fasta	TTYH1	chr19	54410464	54441904