JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
USB1_chr16_57996407_58026618	0/0	c0006	798	1	1	0	0	0	0	copy fasta	USB1	chr16	57996407	58026618
USE1_chr19_17210357_17224829	0/1	c0001	780	392	96	71	162	18	44	copy fasta	USE1	chr19	17210357	17224829
USE1_chr19_17210357_17224829	1/0	c0002	780	17	0	0	16	0	0	copy fasta	USE1	chr19	17210357	17224829
USE1_chr19_17210357_17224829	0/0	c0003	780	5	0	1	4	0	0	copy fasta	USE1	chr19	17210357	17224829
USE1_chr19_17210357_17224829	0/0	c0004	780	4	0	0	4	0	0	copy fasta	USE1	chr19	17210357	17224829
USE1_chr19_17210357_17224829	0/0	c0005	780	2	2	0	0	0	0	copy fasta	USE1	chr19	17210357	17224829
USE1_chr19_17210357_17224829	0/0	c0006	780	1	1	0	0	0	0	copy fasta	USE1	chr19	17210357	17224829
USE1_chr19_17210357_17224829	0/0	c0007	780	1	1	0	0	0	0	copy fasta	USE1	chr19	17210357	17224829
USF1_chr1_161034251_161050977	1/1	c0001	933	396	80	72	180	18	44	copy fasta	USF1	chr1	161034251	161050977
USF2_chr19_35263962_35284821	1/1	c0001	1041	423	97	75	195	12	42	copy fasta	USF2	chr19	35263962	35284821
USF2_chr19_35263962_35284821	0/0	c0002	1041	1	1	0	0	0	0	copy fasta	USF2	chr19	35263962	35284821
USF2_chr19_35263962_35284821	0/0	c0003	1036	1	0	1	0	0	0	copy fasta	USF2	chr19	35263962	35284821
USF2_chr19_35263962_35284821	0/0	c0004	1041	1	0	0	1	0	0	copy fasta	USF2	chr19	35263962	35284821
USF3_chr3_113643385_113701642	0/0	c0001	6735	81	14	19	38	2	8	copy fasta	USF3	chr3	113643385	113701642
USF3_chr3_113643385_113701642	0/0	c0002	6735	70	0	10	48	0	12	copy fasta	USF3	chr3	113643385	113701642
USF3_chr3_113643385_113701642	0/0	c0003	6729	67	9	15	33	5	5	copy fasta	USF3	chr3	113643385	113701642
USF3_chr3_113643385_113701642	0/0	c0004	6732	29	0	1	23	1	4	copy fasta	USF3	chr3	113643385	113701642
USF3_chr3_113643385_113701642	0/0	c0005	6732	13	12	1	0	0	0	copy fasta	USF3	chr3	113643385	113701642
USF3_chr3_113643385_113701642	1/0	c0006	6738	13	11	0	1	0	0	copy fasta	USF3	chr3	113643385	113701642
USF3_chr3_113643385_113701642	0/0	c0007	6729	11	10	1	0	0	0	copy fasta	USF3	chr3	113643385	113701642
USF3_chr3_113643385_113701642	0/0	c0008	6729	7	0	4	3	0	0	copy fasta	USF3	chr3	113643385	113701642
USF3_chr3_113643385_113701642	0/1	c0009	6741	7	0	2	0	1	3	copy fasta	USF3	chr3	113643385	113701642
USF3_chr3_113643385_113701642	0/0	c0010	6738	6	2	2	0	2	0	copy fasta	USF3	chr3	113643385	113701642
USF3_chr3_113643385_113701642	0/0	c0011	6738	4	0	1	3	0	0	copy fasta	USF3	chr3	113643385	113701642
USF3_chr3_113643385_113701642	0/0	c0012	6738	3	3	0	0	0	0	copy fasta	USF3	chr3	113643385	113701642
USF3_chr3_113643385_113701642	0/0	c0013	6723	3	3	0	0	0	0	copy fasta	USF3	chr3	113643385	113701642
USF3_chr3_113643385_113701642	0/0	c0014	6735	2	2	0	0	0	0	copy fasta	USF3	chr3	113643385	113701642
USF3_chr3_113643385_113701642	0/0	c0015	6732	2	2	0	0	0	0	copy fasta	USF3	chr3	113643385	113701642
USF3_chr3_113643385_113701642	0/0	c0016	6735	2	0	0	2	0	0	copy fasta	USF3	chr3	113643385	113701642
USF3_chr3_113643385_113701642	0/0	c0017	6738	2	2	0	0	0	0	copy fasta	USF3	chr3	113643385	113701642
USF3_chr3_113643385_113701642	0/0	c0018	6738	2	2	0	0	0	0	copy fasta	USF3	chr3	113643385	113701642
USF3_chr3_113643385_113701642	0/0	c0019	6735	1	0	0	0	0	1	copy fasta	USF3	chr3	113643385	113701642
USF3_chr3_113643385_113701642	0/0	c0020	6732	1	0	0	1	0	0	copy fasta	USF3	chr3	113643385	113701642
USF3_chr3_113643385_113701642	0/0	c0021	6732	1	0	0	0	0	1	copy fasta	USF3	chr3	113643385	113701642
USF3_chr3_113643385_113701642	0/0	c0022	6732	1	1	0	0	0	0	copy fasta	USF3	chr3	113643385	113701642
USF3_chr3_113643385_113701642	0/0	c0023	6729	1	1	0	0	0	0	copy fasta	USF3	chr3	113643385	113701642
USF3_chr3_113643385_113701642	0/0	c0024	6732	1	1	0	0	0	0	copy fasta	USF3	chr3	113643385	113701642
USF3_chr3_113643385_113701642	0/0	c0025	6726	1	0	0	0	0	1	copy fasta	USF3	chr3	113643385	113701642
USF3_chr3_113643385_113701642	0/0	c0026	6735	1	1	0	0	0	0	copy fasta	USF3	chr3	113643385	113701642
USF3_chr3_113643385_113701642	0/0	c0027	6738	1	1	0	0	0	0	copy fasta	USF3	chr3	113643385	113701642
USF3_chr3_113643385_113701642	0/0	c0028	6735	1	1	0	0	0	0	copy fasta	USF3	chr3	113643385	113701642
USF3_chr3_113643385_113701642	0/0	c0029	6735	1	0	1	0	0	0	copy fasta	USF3	chr3	113643385	113701642
USF3_chr3_113643385_113701642	0/0	c0030	6735	1	0	0	1	0	0	copy fasta	USF3	chr3	113643385	113701642
USF3_chr3_113643385_113701642	0/0	c0031	6738	1	0	0	0	1	0	copy fasta	USF3	chr3	113643385	113701642
USF3_chr3_113643385_113701642	0/0	c0032	6741	1	0	1	0	0	0	copy fasta	USF3	chr3	113643385	113701642
USF3_chr3_113643385_113701642	0/0	c0033	6720	1	1	0	0	0	0	copy fasta	USF3	chr3	113643385	113701642
USF3_chr3_113643385_113701642	0/0	c0034	6729	1	0	0	1	0	0	copy fasta	USF3	chr3	113643385	113701642
USF3_chr3_113643385_113701642	0/0	c0035	6735	1	0	0	0	0	1	copy fasta	USF3	chr3	113643385	113701642
USF3_chr3_113643385_113701642	0/0	c0036	6735	1	1	0	0	0	0	copy fasta	USF3	chr3	113643385	113701642
USH1C_chr11_17488900_17549416	0/0	c0001	2700	102	18	23	52	3	6	copy fasta	USH1C	chr11	17488900	17549416