JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
USP10_chr16_84695000_84784922	0/0	c0014	2397	3	0	1	0	0	2	copy fasta	USP10	chr16	84695000	84784922
USP10_chr16_84695000_84784922	0/0	c0015	2397	2	0	2	0	0	0	copy fasta	USP10	chr16	84695000	84784922
USP10_chr16_84695000_84784922	0/0	c0016	2397	2	0	1	0	0	1	copy fasta	USP10	chr16	84695000	84784922
USP10_chr16_84695000_84784922	0/0	c0017	2397	2	0	0	1	0	1	copy fasta	USP10	chr16	84695000	84784922
USP10_chr16_84695000_84784922	0/0	c0018	2397	2	0	0	0	0	2	copy fasta	USP10	chr16	84695000	84784922
USP10_chr16_84695000_84784922	0/0	c0019	2397	2	2	0	0	0	0	copy fasta	USP10	chr16	84695000	84784922
USP10_chr16_84695000_84784922	0/0	c0020	2397	1	1	0	0	0	0	copy fasta	USP10	chr16	84695000	84784922
USP10_chr16_84695000_84784922	0/0	c0021	2397	1	1	0	0	0	0	copy fasta	USP10	chr16	84695000	84784922
USP10_chr16_84695000_84784922	0/0	c0022	2397	1	0	1	0	0	0	copy fasta	USP10	chr16	84695000	84784922
USP10_chr16_84695000_84784922	0/0	c0023	2397	1	1	0	0	0	0	copy fasta	USP10	chr16	84695000	84784922
USP10_chr16_84695000_84784922	0/0	c0024	2397	1	0	0	1	0	0	copy fasta	USP10	chr16	84695000	84784922
USP10_chr16_84695000_84784922	0/0	c0025	2397	1	0	1	0	0	0	copy fasta	USP10	chr16	84695000	84784922
USP10_chr16_84695000_84784922	0/0	c0026	2397	1	0	0	0	0	1	copy fasta	USP10	chr16	84695000	84784922
USP10_chr16_84695000_84784922	0/0	c0027	2397	1	0	0	1	0	0	copy fasta	USP10	chr16	84695000	84784922
USP10_chr16_84695000_84784922	0/0	c0028	2397	1	1	0	0	0	0	copy fasta	USP10	chr16	84695000	84784922
USP10_chr16_84695000_84784922	0/0	c0029	2397	1	1	0	0	0	0	copy fasta	USP10	chr16	84695000	84784922
USP10_chr16_84695000_84784922	0/0	c0030	2397	1	1	0	0	0	0	copy fasta	USP10	chr16	84695000	84784922
USP10_chr16_84695000_84784922	0/0	c0031	2397	1	0	1	0	0	0	copy fasta	USP10	chr16	84695000	84784922
USP10_chr16_84695000_84784922	0/0	c0032	2397	1	1	0	0	0	0	copy fasta	USP10	chr16	84695000	84784922
USP10_chr16_84695000_84784922	0/0	c0033	2397	1	0	0	1	0	0	copy fasta	USP10	chr16	84695000	84784922
USP10_chr16_84695000_84784922	0/0	c0034	2397	1	0	0	0	0	1	copy fasta	USP10	chr16	84695000	84784922
USP11_chrX_47228009_47253328	1/1	c0001	2763	262	68	48	108	9	27	copy fasta	USP11	chrX	47228009	47253328
USP11_chrX_47228009_47253328	0/0	c0002	2763	7	0	0	7	0	0	copy fasta	USP11	chrX	47228009	47253328
USP11_chrX_47228009_47253328	0/0	c0003	2763	4	4	0	0	0	0	copy fasta	USP11	chrX	47228009	47253328
USP11_chrX_47228009_47253328	0/0	c0004	2763	3	1	2	0	0	0	copy fasta	USP11	chrX	47228009	47253328
USP11_chrX_47228009_47253328	0/0	c0005	2763	3	3	0	0	0	0	copy fasta	USP11	chrX	47228009	47253328
USP11_chrX_47228009_47253328	0/0	c0006	2765	1	0	0	1	0	0	copy fasta	USP11	chrX	47228009	47253328
USP11_chrX_47228009_47253328	0/0	c0007	2761	1	0	0	1	0	0	copy fasta	USP11	chrX	47228009	47253328
USP11_chrX_47228009_47253328	0/0	c0008	2763	1	0	0	1	0	0	copy fasta	USP11	chrX	47228009	47253328
USP12_chr13_27061156_27176811	1/0	c0001	1113	167	58	38	36	6	28	copy fasta	USP12	chr13	27061156	27176811
USP13_chr3_179648040_179794401	1/1	c0001	2592	205	45	40	87	6	25	copy fasta	USP13	chr3	179648040	179794401
USP13_chr3_179648040_179794401	0/0	c0002	2592	55	20	14	14	1	6	copy fasta	USP13	chr3	179648040	179794401
USP13_chr3_179648040_179794401	0/0	c0003	2592	7	6	1	0	0	0	copy fasta	USP13	chr3	179648040	179794401
USP13_chr3_179648040_179794401	0/0	c0004	2592	6	1	1	0	1	3	copy fasta	USP13	chr3	179648040	179794401
USP13_chr3_179648040_179794401	0/0	c0005	2592	6	5	1	0	0	0	copy fasta	USP13	chr3	179648040	179794401
USP13_chr3_179648040_179794401	0/0	c0006	2592	5	3	0	0	0	2	copy fasta	USP13	chr3	179648040	179794401
USP13_chr3_179648040_179794401	0/0	c0007	2592	3	0	0	3	0	0	copy fasta	USP13	chr3	179648040	179794401
USP13_chr3_179648040_179794401	0/0	c0008	2592	3	2	1	0	0	0	copy fasta	USP13	chr3	179648040	179794401
USP13_chr3_179648040_179794401	0/0	c0009	2592	2	2	0	0	0	0	copy fasta	USP13	chr3	179648040	179794401
USP13_chr3_179648040_179794401	0/0	c0010	2592	2	0	0	0	0	2	copy fasta	USP13	chr3	179648040	179794401
USP13_chr3_179648040_179794401	0/0	c0011	2592	1	1	0	0	0	0	copy fasta	USP13	chr3	179648040	179794401
USP13_chr3_179648040_179794401	0/0	c0012	2592	1	1	0	0	0	0	copy fasta	USP13	chr3	179648040	179794401
USP13_chr3_179648040_179794401	0/0	c0013	2592	1	0	0	1	0	0	copy fasta	USP13	chr3	179648040	179794401
USP13_chr3_179648040_179794401	0/0	c0014	2592	1	0	0	1	0	0	copy fasta	USP13	chr3	179648040	179794401
USP13_chr3_179648040_179794401	0/0	c0015	2592	1	1	0	0	0	0	copy fasta	USP13	chr3	179648040	179794401
USP13_chr3_179648040_179794401	0/0	c0016	2592	1	1	0	0	0	0	copy fasta	USP13	chr3	179648040	179794401
USP14_chr18_153557_219629	1/1	c0001	1485	331	81	65	132	11	40	copy fasta	USP14	chr18	153557	219629
USP14_chr18_153557_219629	0/0	c0002	1485	30	14	6	0	3	7	copy fasta	USP14	chr18	153557	219629
USP14_chr18_153557_219629	0/0	c0003	1485	12	0	0	12	0	0	copy fasta	USP14	chr18	153557	219629
USP14_chr18_153557_219629	0/0	c0004	1485	4	1	2	1	0	0	copy fasta	USP14	chr18	153557	219629