JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
USP17L21_chr4_9257872_9269464	0/0	c0052	1593	1	1	0	0	0	0	copy fasta	USP17L21	chr4	9257872	9269464
USP17L21_chr4_9257872_9269464	0/0	c0053	1593	1	1	0	0	0	0	copy fasta	USP17L21	chr4	9257872	9269464
USP17L21_chr4_9257872_9269464	0/0	c0054	1593	1	1	0	0	0	0	copy fasta	USP17L21	chr4	9257872	9269464
USP17L21_chr4_9257872_9269464	0/0	c0055	1593	1	1	0	0	0	0	copy fasta	USP17L21	chr4	9257872	9269464
USP17L21_chr4_9257872_9269464	0/0	c0056	1593	1	0	1	0	0	0	copy fasta	USP17L21	chr4	9257872	9269464
USP17L21_chr4_9257872_9269464	0/0	c0057	1593	1	0	0	1	0	0	copy fasta	USP17L21	chr4	9257872	9269464
USP17L21_chr4_9257872_9269464	0/0	c0058	1593	1	0	0	1	0	0	copy fasta	USP17L21	chr4	9257872	9269464
USP17L21_chr4_9257872_9269464	0/0	c0059	1593	1	0	0	1	0	0	copy fasta	USP17L21	chr4	9257872	9269464
USP17L21_chr4_9257872_9269464	0/0	c0060	1593	1	0	0	0	1	0	copy fasta	USP17L21	chr4	9257872	9269464
USP17L21_chr4_9257872_9269464	0/0	c0061	1593	1	1	0	0	0	0	copy fasta	USP17L21	chr4	9257872	9269464
USP17L21_chr4_9257872_9269464	0/0	c0062	1593	1	0	0	1	0	0	copy fasta	USP17L21	chr4	9257872	9269464
USP17L21_chr4_9257872_9269464	0/0	c0063	1593	1	0	0	1	0	0	copy fasta	USP17L21	chr4	9257872	9269464
USP17L21_chr4_9257872_9269464	0/0	c0064	1593	1	0	0	1	0	0	copy fasta	USP17L21	chr4	9257872	9269464
USP17L21_chr4_9257872_9269464	0/0	c0065	1593	1	0	0	1	0	0	copy fasta	USP17L21	chr4	9257872	9269464
USP17L21_chr4_9257872_9269464	0/0	c0066	1593	1	0	0	0	0	1	copy fasta	USP17L21	chr4	9257872	9269464
USP17L21_chr4_9257872_9269464	0/0	c0067	1593	1	0	0	1	0	0	copy fasta	USP17L21	chr4	9257872	9269464
USP17L21_chr4_9257872_9269464	0/0	c0068	1593	1	1	0	0	0	0	copy fasta	USP17L21	chr4	9257872	9269464
USP17L21_chr4_9257872_9269464	0/0	c0069	1593	1	1	0	0	0	0	copy fasta	USP17L21	chr4	9257872	9269464
USP17L21_chr4_9257872_9269464	0/0	c0070	1593	1	0	1	0	0	0	copy fasta	USP17L21	chr4	9257872	9269464
USP17L21_chr4_9257872_9269464	0/0	c0071	1593	1	0	0	1	0	0	copy fasta	USP17L21	chr4	9257872	9269464
USP17L21_chr4_9257872_9269464	0/0	c0072	1593	1	0	0	0	0	1	copy fasta	USP17L21	chr4	9257872	9269464
USP17L21_chr4_9257872_9269464	0/0	c0073	1593	1	0	1	0	0	0	copy fasta	USP17L21	chr4	9257872	9269464
USP17L21_chr4_9257872_9269464	0/0	c0074	1593	1	0	1	0	0	0	copy fasta	USP17L21	chr4	9257872	9269464
USP17L21_chr4_9257872_9269464	0/0	c0075	1593	1	1	0	0	0	0	copy fasta	USP17L21	chr4	9257872	9269464
USP17L21_chr4_9257872_9269464	0/0	c0076	1593	1	0	1	0	0	0	copy fasta	USP17L21	chr4	9257872	9269464
USP17L21_chr4_9257872_9269464	0/0	c0077	1593	1	0	0	0	0	1	copy fasta	USP17L21	chr4	9257872	9269464
USP17L21_chr4_9257872_9269464	0/0	c0078	1593	1	0	0	1	0	0	copy fasta	USP17L21	chr4	9257872	9269464
USP17L21_chr4_9257872_9269464	0/0	c0079	1593	1	0	1	0	0	0	copy fasta	USP17L21	chr4	9257872	9269464
USP17L21_chr4_9257872_9269464	0/0	c0080	1593	1	0	1	0	0	0	copy fasta	USP17L21	chr4	9257872	9269464
USP17L21_chr4_9257872_9269464	0/0	c0081	1593	1	0	0	1	0	0	copy fasta	USP17L21	chr4	9257872	9269464
USP17L21_chr4_9257872_9269464	0/0	c0082	1593	1	0	0	1	0	0	copy fasta	USP17L21	chr4	9257872	9269464
USP17L21_chr4_9257872_9269464	0/0	c0083	1593	1	1	0	0	0	0	copy fasta	USP17L21	chr4	9257872	9269464
USP17L21_chr4_9257872_9269464	0/0	c0084	1593	1	1	0	0	0	0	copy fasta	USP17L21	chr4	9257872	9269464
USP17L21_chr4_9257872_9269464	0/0	c0085	1593	1	0	0	0	0	1	copy fasta	USP17L21	chr4	9257872	9269464
USP17L21_chr4_9257872_9269464	0/0	c0086	1593	1	0	0	0	1	0	copy fasta	USP17L21	chr4	9257872	9269464
USP17L21_chr4_9257872_9269464	0/0	c0087	1593	1	0	0	1	0	0	copy fasta	USP17L21	chr4	9257872	9269464
USP17L21_chr4_9257872_9269464	0/0	c0088	1593	1	0	0	0	1	0	copy fasta	USP17L21	chr4	9257872	9269464
USP17L21_chr4_9257872_9269464	0/0	c0089	1593	1	1	0	0	0	0	copy fasta	USP17L21	chr4	9257872	9269464
USP17L21_chr4_9257872_9269464	0/0	c0090	1593	1	0	0	1	0	0	copy fasta	USP17L21	chr4	9257872	9269464
USP17L21_chr4_9257872_9269464	0/0	c0091	1593	1	0	0	1	0	0	copy fasta	USP17L21	chr4	9257872	9269464
USP17L21_chr4_9257872_9269464	0/0	c0092	1593	1	1	0	0	0	0	copy fasta	USP17L21	chr4	9257872	9269464
USP17L21_chr4_9257872_9269464	0/0	c0093	1593	1	0	0	0	1	0	copy fasta	USP17L21	chr4	9257872	9269464
USP17L21_chr4_9257872_9269464	0/0	c0094	1593	1	0	0	1	0	0	copy fasta	USP17L21	chr4	9257872	9269464
USP17L25_chr4_9324911_9336503	0/0	c0001	1593	4	0	0	4	0	0	copy fasta	USP17L25	chr4	9324911	9336503
USP17L25_chr4_9324911_9336503	0/0	c0002	1593	4	0	0	1	0	3	copy fasta	USP17L25	chr4	9324911	9336503
USP17L25_chr4_9324911_9336503	0/0	c0003	1592	3	0	0	3	0	0	copy fasta	USP17L25	chr4	9324911	9336503
USP17L25_chr4_9324911_9336503	0/0	c0004	1593	2	0	0	2	0	0	copy fasta	USP17L25	chr4	9324911	9336503
USP17L25_chr4_9324911_9336503	0/0	c0005	1593	2	0	0	2	0	0	copy fasta	USP17L25	chr4	9324911	9336503
USP17L25_chr4_9324911_9336503	0/0	c0006	1593	1	1	0	0	0	0	copy fasta	USP17L25	chr4	9324911	9336503
USP17L25_chr4_9324911_9336503	0/0	c0007	1593	1	1	0	0	0	0	copy fasta	USP17L25	chr4	9324911	9336503