JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
USP19_chr3_49103050_49125823	0/0	c0005	4155	7	7	0	0	0	0	copy fasta	USP19	chr3	49103050	49125823
USP19_chr3_49103050_49125823	0/0	c0006	4155	5	5	0	0	0	0	copy fasta	USP19	chr3	49103050	49125823
USP19_chr3_49103050_49125823	0/0	c0007	4155	1	0	0	1	0	0	copy fasta	USP19	chr3	49103050	49125823
USP19_chr3_49103050_49125823	0/0	c0008	4155	1	0	0	1	0	0	copy fasta	USP19	chr3	49103050	49125823
USP19_chr3_49103050_49125823	0/0	c0009	4155	1	0	0	1	0	0	copy fasta	USP19	chr3	49103050	49125823
USP19_chr3_49103050_49125823	0/0	c0010	4155	1	0	0	1	0	0	copy fasta	USP19	chr3	49103050	49125823
USP19_chr3_49103050_49125823	0/0	c0011	4155	1	1	0	0	0	0	copy fasta	USP19	chr3	49103050	49125823
USP19_chr3_49103050_49125823	0/0	c0012	4155	1	0	1	0	0	0	copy fasta	USP19	chr3	49103050	49125823
USP19_chr3_49103050_49125823	0/0	c0013	4155	1	1	0	0	0	0	copy fasta	USP19	chr3	49103050	49125823
USP19_chr3_49103050_49125823	0/0	c0014	4155	1	0	0	1	0	0	copy fasta	USP19	chr3	49103050	49125823
USP19_chr3_49103050_49125823	0/0	c0015	4155	1	1	0	0	0	0	copy fasta	USP19	chr3	49103050	49125823
USP19_chr3_49103050_49125823	0/0	c0016	4155	1	0	0	0	0	1	copy fasta	USP19	chr3	49103050	49125823
USP19_chr3_49103050_49125823	0/0	c0017	4155	1	0	0	1	0	0	copy fasta	USP19	chr3	49103050	49125823
USP19_chr3_49103050_49125823	0/0	c0018	4155	1	1	0	0	0	0	copy fasta	USP19	chr3	49103050	49125823
USP19_chr3_49103050_49125823	0/0	c0019	4155	1	1	0	0	0	0	copy fasta	USP19	chr3	49103050	49125823
USP19_chr3_49103050_49125823	0/0	c0020	4155	1	1	0	0	0	0	copy fasta	USP19	chr3	49103050	49125823
USP19_chr3_49103050_49125823	0/0	c0021	4155	1	0	0	0	0	1	copy fasta	USP19	chr3	49103050	49125823
USP19_chr3_49103050_49125823	0/0	c0022	4155	1	0	0	1	0	0	copy fasta	USP19	chr3	49103050	49125823
USP19_chr3_49103050_49125823	0/0	c0023	4155	1	0	1	0	0	0	copy fasta	USP19	chr3	49103050	49125823
USP19_chr3_49103050_49125823	0/0	c0024	4155	1	0	0	1	0	0	copy fasta	USP19	chr3	49103050	49125823
USP1_chr1_62432049_62456804	1/1	c0001	2358	400	83	71	184	18	42	copy fasta	USP1	chr1	62432049	62456804
USP1_chr1_62432049_62456804	0/0	c0002	2358	6	6	0	0	0	0	copy fasta	USP1	chr1	62432049	62456804
USP1_chr1_62432049_62456804	0/0	c0003	2358	3	0	3	0	0	0	copy fasta	USP1	chr1	62432049	62456804
USP1_chr1_62432049_62456804	0/0	c0004	2358	2	0	0	2	0	0	copy fasta	USP1	chr1	62432049	62456804
USP1_chr1_62432049_62456804	0/0	c0005	2358	1	1	0	0	0	0	copy fasta	USP1	chr1	62432049	62456804
USP20_chr9_129830458_129886828	0/1	c0001	2742	182	41	29	81	7	23	copy fasta	USP20	chr9	129830458	129886828
USP20_chr9_129830458_129886828	0/0	c0002	2742	83	4	24	38	8	9	copy fasta	USP20	chr9	129830458	129886828
USP20_chr9_129830458_129886828	1/0	c0003	2745	12	10	1	0	0	0	copy fasta	USP20	chr9	129830458	129886828
USP20_chr9_129830458_129886828	0/0	c0004	2745	8	0	4	0	1	3	copy fasta	USP20	chr9	129830458	129886828
USP20_chr9_129830458_129886828	0/0	c0005	2742	7	0	3	4	0	0	copy fasta	USP20	chr9	129830458	129886828
USP20_chr9_129830458_129886828	0/0	c0006	2742	6	0	2	0	1	3	copy fasta	USP20	chr9	129830458	129886828
USP20_chr9_129830458_129886828	0/0	c0007	2745	6	6	0	0	0	0	copy fasta	USP20	chr9	129830458	129886828
USP20_chr9_129830458_129886828	0/0	c0008	2745	4	0	0	3	0	1	copy fasta	USP20	chr9	129830458	129886828
USP20_chr9_129830458_129886828	0/0	c0009	2742	4	0	0	0	0	4	copy fasta	USP20	chr9	129830458	129886828
USP20_chr9_129830458_129886828	0/0	c0010	2742	3	3	0	0	0	0	copy fasta	USP20	chr9	129830458	129886828
USP20_chr9_129830458_129886828	0/0	c0011	2742	3	1	0	0	0	2	copy fasta	USP20	chr9	129830458	129886828
USP20_chr9_129830458_129886828	0/0	c0012	2742	3	2	1	0	0	0	copy fasta	USP20	chr9	129830458	129886828
USP20_chr9_129830458_129886828	0/0	c0013	2745	3	3	0	0	0	0	copy fasta	USP20	chr9	129830458	129886828
USP20_chr9_129830458_129886828	0/0	c0014	2742	2	0	0	2	0	0	copy fasta	USP20	chr9	129830458	129886828
USP20_chr9_129830458_129886828	0/0	c0015	2742	2	1	1	0	0	0	copy fasta	USP20	chr9	129830458	129886828
USP20_chr9_129830458_129886828	0/0	c0016	2742	2	0	0	0	0	2	copy fasta	USP20	chr9	129830458	129886828
USP20_chr9_129830458_129886828	0/0	c0017	2742	2	2	0	0	0	0	copy fasta	USP20	chr9	129830458	129886828
USP20_chr9_129830458_129886828	0/0	c0018	2745	1	0	0	1	0	0	copy fasta	USP20	chr9	129830458	129886828
USP20_chr9_129830458_129886828	0/0	c0019	2742	1	0	0	0	0	1	copy fasta	USP20	chr9	129830458	129886828
USP20_chr9_129830458_129886828	0/0	c0020	2742	1	1	0	0	0	0	copy fasta	USP20	chr9	129830458	129886828
USP20_chr9_129830458_129886828	0/0	c0021	2742	1	0	1	0	0	0	copy fasta	USP20	chr9	129830458	129886828
USP20_chr9_129830458_129886828	0/0	c0022	2742	1	1	0	0	0	0	copy fasta	USP20	chr9	129830458	129886828
USP20_chr9_129830458_129886828	0/0	c0023	2742	1	1	0	0	0	0	copy fasta	USP20	chr9	129830458	129886828
USP20_chr9_129830458_129886828	0/0	c0024	2742	1	1	0	0	0	0	copy fasta	USP20	chr9	129830458	129886828
USP20_chr9_129830458_129886828	0/0	c0025	2742	1	0	0	1	0	0	copy fasta	USP20	chr9	129830458	129886828