JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
USP49_chr6_41784896_41900375	0/1	c0001	2067	242	52	51	101	6	31	copy fasta	USP49	chr6	41784896	41900375
USP49_chr6_41784896_41900375	0/0	c0002	2067	67	20	8	27	4	8	copy fasta	USP49	chr6	41784896	41900375
USP49_chr6_41784896_41900375	1/0	c0003	2067	62	11	13	29	4	4	copy fasta	USP49	chr6	41784896	41900375
USP49_chr6_41784896_41900375	0/0	c0004	2067	5	0	0	5	0	0	copy fasta	USP49	chr6	41784896	41900375
USP49_chr6_41784896_41900375	0/0	c0005	2067	3	1	2	0	0	0	copy fasta	USP49	chr6	41784896	41900375
USP49_chr6_41784896_41900375	0/0	c0006	2067	1	0	0	1	0	0	copy fasta	USP49	chr6	41784896	41900375
USP49_chr6_41784896_41900375	0/0	c0007	2067	1	1	0	0	0	0	copy fasta	USP49	chr6	41784896	41900375
USP49_chr6_41784896_41900375	0/0	c0008	2067	1	1	0	0	0	0	copy fasta	USP49	chr6	41784896	41900375
USP49_chr6_41784896_41900375	0/0	c0009	2067	1	0	0	0	0	1	copy fasta	USP49	chr6	41784896	41900375
USP49_chr6_41784896_41900375	0/0	c0010	2067	1	0	0	1	0	0	copy fasta	USP49	chr6	41784896	41900375
USP4_chr3_49272144_49345053	1/1	c0001	2892	155	60	35	29	10	19	copy fasta	USP4	chr3	49272144	49345053
USP4_chr3_49272144_49345053	0/0	c0002	2892	39	2	14	18	2	3	copy fasta	USP4	chr3	49272144	49345053
USP4_chr3_49272144_49345053	0/0	c0003	2892	15	13	2	0	0	0	copy fasta	USP4	chr3	49272144	49345053
USP4_chr3_49272144_49345053	0/0	c0004	2892	4	0	4	0	0	0	copy fasta	USP4	chr3	49272144	49345053
USP4_chr3_49272144_49345053	0/0	c0005	2892	3	0	3	0	0	0	copy fasta	USP4	chr3	49272144	49345053
USP4_chr3_49272144_49345053	0/0	c0006	2892	3	1	0	0	2	0	copy fasta	USP4	chr3	49272144	49345053
USP4_chr3_49272144_49345053	0/0	c0007	2892	2	2	0	0	0	0	copy fasta	USP4	chr3	49272144	49345053
USP4_chr3_49272144_49345053	0/0	c0008	2892	2	0	0	2	0	0	copy fasta	USP4	chr3	49272144	49345053
USP4_chr3_49272144_49345053	0/0	c0009	2892	1	0	0	1	0	0	copy fasta	USP4	chr3	49272144	49345053
USP4_chr3_49272144_49345053	0/0	c0010	2892	1	1	0	0	0	0	copy fasta	USP4	chr3	49272144	49345053
USP4_chr3_49272144_49345053	0/0	c0011	2892	1	1	0	0	0	0	copy fasta	USP4	chr3	49272144	49345053
USP50_chr15_50495562_50551666	1/1	c0001	1005	353	70	66	166	13	36	copy fasta	USP50	chr15	50495562	50551666
USP50_chr15_50495562_50551666	0/0	c0002	1005	10	10	0	0	0	0	copy fasta	USP50	chr15	50495562	50551666
USP50_chr15_50495562_50551666	0/0	c0003	1006	8	8	0	0	0	0	copy fasta	USP50	chr15	50495562	50551666
USP50_chr15_50495562_50551666	0/0	c0004	1005	5	5	0	0	0	0	copy fasta	USP50	chr15	50495562	50551666
USP50_chr15_50495562_50551666	0/0	c0005	1005	2	0	0	2	0	0	copy fasta	USP50	chr15	50495562	50551666
USP50_chr15_50495562_50551666	0/0	c0006	1005	2	2	0	0	0	0	copy fasta	USP50	chr15	50495562	50551666
USP50_chr15_50495562_50551666	0/0	c0007	1005	2	0	2	0	0	0	copy fasta	USP50	chr15	50495562	50551666
USP50_chr15_50495562_50551666	0/0	c0008	1005	1	1	0	0	0	0	copy fasta	USP50	chr15	50495562	50551666
USP50_chr15_50495562_50551666	0/0	c0009	1005	1	0	0	0	1	0	copy fasta	USP50	chr15	50495562	50551666
USP51_chrX_55479616_55494848	1/1	c0001	2136	153	73	27	39	2	10	copy fasta	USP51	chrX	55479616	55494848
USP51_chrX_55479616_55494848	0/0	c0002	2136	129	3	28	74	7	17	copy fasta	USP51	chrX	55479616	55494848
USP51_chrX_55479616_55494848	0/0	c0003	2136	2	0	0	2	0	0	copy fasta	USP51	chrX	55479616	55494848
USP51_chrX_55479616_55494848	0/0	c0004	2135	1	0	0	1	0	0	copy fasta	USP51	chrX	55479616	55494848
USP51_chrX_55479616_55494848	0/0	c0005	2136	1	0	0	1	0	0	copy fasta	USP51	chrX	55479616	55494848
USP51_chrX_55479616_55494848	0/0	c0006	2138	1	0	0	1	0	0	copy fasta	USP51	chrX	55479616	55494848
USP51_chrX_55479616_55494848	0/0	c0007	2148	1	1	0	0	0	0	copy fasta	USP51	chrX	55479616	55494848
USP51_chrX_55479616_55494848	0/0	c0008	2136	1	0	0	1	0	0	copy fasta	USP51	chrX	55479616	55494848
USP51_chrX_55479616_55494848	0/0	c0009	2136	1	0	0	1	0	0	copy fasta	USP51	chrX	55479616	55494848
USP51_chrX_55479616_55494848	0/0	c0010	2136	1	0	0	1	0	0	copy fasta	USP51	chrX	55479616	55494848
USP51_chrX_55479616_55494848	0/0	c0011	2136	1	1	0	0	0	0	copy fasta	USP51	chrX	55479616	55494848
USP51_chrX_55479616_55494848	0/0	c0012	2135	1	0	0	1	0	0	copy fasta	USP51	chrX	55479616	55494848
USP51_chrX_55479616_55494848	0/0	c0013	2139	1	0	0	1	0	0	copy fasta	USP51	chrX	55479616	55494848
USP51_chrX_55479616_55494848	0/0	c0014	2134	1	0	1	0	0	0	copy fasta	USP51	chrX	55479616	55494848
USP51_chrX_55479616_55494848	0/0	c0015	2136	1	0	0	1	0	0	copy fasta	USP51	chrX	55479616	55494848
USP53_chr4_119207713_119300518	1/1	c0001	3222	168	54	25	57	11	19	copy fasta	USP53	chr4	119207713	119300518
USP53_chr4_119207713_119300518	0/0	c0002	3222	98	16	24	46	3	9	copy fasta	USP53	chr4	119207713	119300518
USP53_chr4_119207713_119300518	0/0	c0003	3222	64	6	12	38	1	7	copy fasta	USP53	chr4	119207713	119300518
USP53_chr4_119207713_119300518	0/0	c0004	3222	13	0	0	13	0	0	copy fasta	USP53	chr4	119207713	119300518
USP53_chr4_119207713_119300518	0/0	c0005	3222	6	5	1	0	0	0	copy fasta	USP53	chr4	119207713	119300518