JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
USP53_chr4_119207713_119300518	0/0	c0006	3222	5	1	2	0	1	1	copy fasta	USP53	chr4	119207713	119300518
USP53_chr4_119207713_119300518	0/0	c0007	3222	4	0	0	4	0	0	copy fasta	USP53	chr4	119207713	119300518
USP53_chr4_119207713_119300518	0/0	c0008	3222	4	0	0	4	0	0	copy fasta	USP53	chr4	119207713	119300518
USP53_chr4_119207713_119300518	0/0	c0009	3222	3	3	0	0	0	0	copy fasta	USP53	chr4	119207713	119300518
USP53_chr4_119207713_119300518	0/0	c0010	3222	2	0	0	2	0	0	copy fasta	USP53	chr4	119207713	119300518
USP53_chr4_119207713_119300518	0/0	c0011	3222	1	1	0	0	0	0	copy fasta	USP53	chr4	119207713	119300518
USP53_chr4_119207713_119300518	0/0	c0012	3222	1	0	0	1	0	0	copy fasta	USP53	chr4	119207713	119300518
USP53_chr4_119207713_119300518	0/0	c0013	3222	1	0	0	1	0	0	copy fasta	USP53	chr4	119207713	119300518
USP53_chr4_119207713_119300518	0/0	c0014	3222	1	1	0	0	0	0	copy fasta	USP53	chr4	119207713	119300518
USP53_chr4_119207713_119300518	0/0	c0015	3222	1	0	0	1	0	0	copy fasta	USP53	chr4	119207713	119300518
USP53_chr4_119207713_119300518	0/0	c0016	3222	1	1	0	0	0	0	copy fasta	USP53	chr4	119207713	119300518
USP53_chr4_119207713_119300518	0/0	c0017	3222	1	1	0	0	0	0	copy fasta	USP53	chr4	119207713	119300518
USP53_chr4_119207713_119300518	0/0	c0018	3222	1	1	0	0	0	0	copy fasta	USP53	chr4	119207713	119300518
USP53_chr4_119207713_119300518	0/0	c0019	3222	1	0	1	0	0	0	copy fasta	USP53	chr4	119207713	119300518
USP53_chr4_119207713_119300518	0/0	c0020	3232	1	0	0	1	0	0	copy fasta	USP53	chr4	119207713	119300518
USP53_chr4_119207713_119300518	0/0	c0021	3222	1	0	1	0	0	0	copy fasta	USP53	chr4	119207713	119300518
USP53_chr4_119207713_119300518	0/0	c0022	3222	1	0	1	0	0	0	copy fasta	USP53	chr4	119207713	119300518
USP53_chr4_119207713_119300518	0/0	c0023	3222	1	0	1	0	0	0	copy fasta	USP53	chr4	119207713	119300518
USP54_chr10_73492538_73596342	1/1	c0001	5055	164	42	14	82	0	24	copy fasta	USP54	chr10	73492538	73596342
USP54_chr10_73492538_73596342	0/0	c0002	5055	13	11	2	0	0	0	copy fasta	USP54	chr10	73492538	73596342
USP54_chr10_73492538_73596342	0/0	c0003	5055	4	3	1	0	0	0	copy fasta	USP54	chr10	73492538	73596342
USP54_chr10_73492538_73596342	0/0	c0004	5055	2	0	1	0	0	1	copy fasta	USP54	chr10	73492538	73596342
USP54_chr10_73492538_73596342	0/0	c0005	5055	1	1	0	0	0	0	copy fasta	USP54	chr10	73492538	73596342
USP54_chr10_73492538_73596342	0/0	c0006	5055	1	0	1	0	0	0	copy fasta	USP54	chr10	73492538	73596342
USP54_chr10_73492538_73596342	0/0	c0007	5055	1	1	0	0	0	0	copy fasta	USP54	chr10	73492538	73596342
USP54_chr10_73492538_73596342	0/0	c0008	5055	1	1	0	0	0	0	copy fasta	USP54	chr10	73492538	73596342
USP54_chr10_73492538_73596342	0/0	c0009	5055	1	0	0	1	0	0	copy fasta	USP54	chr10	73492538	73596342
USP54_chr10_73492538_73596342	0/0	c0010	5055	1	1	0	0	0	0	copy fasta	USP54	chr10	73492538	73596342
USP54_chr10_73492538_73596342	0/0	c0011	5055	1	0	0	1	0	0	copy fasta	USP54	chr10	73492538	73596342
USP54_chr10_73492538_73596342	0/0	c0012	5055	1	1	0	0	0	0	copy fasta	USP54	chr10	73492538	73596342
USP54_chr10_73492538_73596342	0/0	c0013	5055	1	1	0	0	0	0	copy fasta	USP54	chr10	73492538	73596342
USP54_chr10_73492538_73596342	0/0	c0014	5055	1	0	1	0	0	0	copy fasta	USP54	chr10	73492538	73596342
USP54_chr10_73492538_73596342	0/0	c0015	5055	1	0	0	1	0	0	copy fasta	USP54	chr10	73492538	73596342
USP54_chr10_73492538_73596342	0/0	c0016	5055	1	0	0	1	0	0	copy fasta	USP54	chr10	73492538	73596342
USP54_chr10_73492538_73596342	0/0	c0017	5055	1	0	0	0	0	1	copy fasta	USP54	chr10	73492538	73596342
USP5_chr12_6847150_6871632	0/1	c0001	2577	190	58	24	90	3	14	copy fasta	USP5	chr12	6847150	6871632
USP5_chr12_6847150_6871632	1/0	c0002	2577	161	18	39	63	12	28	copy fasta	USP5	chr12	6847150	6871632
USP5_chr12_6847150_6871632	0/0	c0003	2577	12	0	0	12	0	0	copy fasta	USP5	chr12	6847150	6871632
USP5_chr12_6847150_6871632	0/0	c0004	2577	6	6	0	0	0	0	copy fasta	USP5	chr12	6847150	6871632
USP5_chr12_6847150_6871632	0/0	c0005	2577	3	0	0	3	0	0	copy fasta	USP5	chr12	6847150	6871632
USP5_chr12_6847150_6871632	0/0	c0006	2577	3	0	3	0	0	0	copy fasta	USP5	chr12	6847150	6871632
USP5_chr12_6847150_6871632	0/0	c0007	2577	3	0	1	0	1	1	copy fasta	USP5	chr12	6847150	6871632
USP5_chr12_6847150_6871632	0/0	c0008	2577	3	3	0	0	0	0	copy fasta	USP5	chr12	6847150	6871632
USP5_chr12_6847150_6871632	0/0	c0009	2577	2	0	0	2	0	0	copy fasta	USP5	chr12	6847150	6871632
USP5_chr12_6847150_6871632	0/0	c0010	2577	2	0	0	2	0	0	copy fasta	USP5	chr12	6847150	6871632
USP5_chr12_6847150_6871632	0/0	c0011	2577	1	0	1	0	0	0	copy fasta	USP5	chr12	6847150	6871632
USP5_chr12_6847150_6871632	0/0	c0012	2577	1	0	0	0	0	1	copy fasta	USP5	chr12	6847150	6871632
USP5_chr12_6847150_6871632	0/0	c0013	2577	1	1	0	0	0	0	copy fasta	USP5	chr12	6847150	6871632
USP5_chr12_6847150_6871632	0/0	c0014	2577	1	1	0	0	0	0	copy fasta	USP5	chr12	6847150	6871632
USP5_chr12_6847150_6871632	0/0	c0015	2577	1	1	0	0	0	0	copy fasta	USP5	chr12	6847150	6871632