JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
VANGL1_chr1_115636970_115703221	0/0	c0006	1575	3	2	1	0	0	0	copy fasta	VANGL1	chr1	115636970	115703221
VANGL1_chr1_115636970_115703221	0/0	c0007	1575	2	2	0	0	0	0	copy fasta	VANGL1	chr1	115636970	115703221
VANGL1_chr1_115636970_115703221	0/0	c0008	1575	1	0	0	1	0	0	copy fasta	VANGL1	chr1	115636970	115703221
VANGL1_chr1_115636970_115703221	0/0	c0009	1575	1	0	0	0	0	1	copy fasta	VANGL1	chr1	115636970	115703221
VANGL1_chr1_115636970_115703221	0/0	c0010	1575	1	0	0	1	0	0	copy fasta	VANGL1	chr1	115636970	115703221
VANGL1_chr1_115636970_115703221	0/0	c0011	1575	1	1	0	0	0	0	copy fasta	VANGL1	chr1	115636970	115703221
VANGL1_chr1_115636970_115703221	0/0	c0012	1575	1	0	0	1	0	0	copy fasta	VANGL1	chr1	115636970	115703221
VANGL1_chr1_115636970_115703221	0/0	c0013	1575	1	0	0	0	0	1	copy fasta	VANGL1	chr1	115636970	115703221
VANGL1_chr1_115636970_115703221	0/0	c0014	1575	1	0	1	0	0	0	copy fasta	VANGL1	chr1	115636970	115703221
VANGL2_chr1_160395564_160433670	0/0	c0001	1566	148	52	15	59	6	16	copy fasta	VANGL2	chr1	160395564	160433670
VANGL2_chr1_160395564_160433670	1/1	c0002	1566	145	13	32	79	5	14	copy fasta	VANGL2	chr1	160395564	160433670
VANGL2_chr1_160395564_160433670	0/0	c0003	1566	80	19	13	28	5	15	copy fasta	VANGL2	chr1	160395564	160433670
VANGL2_chr1_160395564_160433670	0/0	c0004	1566	8	7	1	0	0	0	copy fasta	VANGL2	chr1	160395564	160433670
VANGL2_chr1_160395564_160433670	0/0	c0005	1566	2	1	1	0	0	0	copy fasta	VANGL2	chr1	160395564	160433670
VANGL2_chr1_160395564_160433670	0/0	c0006	1566	2	0	0	2	0	0	copy fasta	VANGL2	chr1	160395564	160433670
VANGL2_chr1_160395564_160433670	0/0	c0007	1566	1	0	0	0	0	1	copy fasta	VANGL2	chr1	160395564	160433670
VANGL2_chr1_160395564_160433670	0/0	c0008	1566	1	0	0	0	0	1	copy fasta	VANGL2	chr1	160395564	160433670
VANGL2_chr1_160395564_160433670	0/0	c0009	1566	1	1	0	0	0	0	copy fasta	VANGL2	chr1	160395564	160433670
VANGL2_chr1_160395564_160433670	0/0	c0010	1566	1	0	0	0	0	1	copy fasta	VANGL2	chr1	160395564	160433670
VANGL2_chr1_160395564_160433670	0/0	c0011	1566	1	1	0	0	0	0	copy fasta	VANGL2	chr1	160395564	160433670
VAPA_chr18_9909016_9965021	1/1	c0001	750	363	77	72	161	15	36	copy fasta	VAPA	chr18	9909016	9965021
VAPA_chr18_9909016_9965021	0/0	c0002	750	14	5	2	6	1	0	copy fasta	VAPA	chr18	9909016	9965021
VAPA_chr18_9909016_9965021	0/0	c0003	750	3	1	2	0	0	0	copy fasta	VAPA	chr18	9909016	9965021
VAPA_chr18_9909016_9965021	0/0	c0004	750	3	3	0	0	0	0	copy fasta	VAPA	chr18	9909016	9965021
VAPA_chr18_9909016_9965021	0/0	c0005	750	2	2	0	0	0	0	copy fasta	VAPA	chr18	9909016	9965021
VAPA_chr18_9909016_9965021	0/0	c0006	750	1	0	0	1	0	0	copy fasta	VAPA	chr18	9909016	9965021
VAPB_chr20_58384229_58456101	1/1	c0001	732	366	89	64	164	10	37	copy fasta	VAPB	chr20	58384229	58456101
VAPB_chr20_58384229_58456101	0/0	c0002	732	2	2	0	0	0	0	copy fasta	VAPB	chr20	58384229	58456101
VAPB_chr20_58384229_58456101	0/0	c0003	732	1	1	0	0	0	0	copy fasta	VAPB	chr20	58384229	58456101
VAPB_chr20_58384229_58456101	0/0	c0004	732	1	0	0	0	0	1	copy fasta	VAPB	chr20	58384229	58456101
VARS1_chr6_31772518_31800752	0/1	c0001	3795	133	16	27	66	11	12	copy fasta	VARS1	chr6	31772518	31800752
VARS1_chr6_31772518_31800752	0/0	c0002	3795	95	25	26	32	2	10	copy fasta	VARS1	chr6	31772518	31800752
VARS1_chr6_31772518_31800752	0/0	c0003	3795	84	19	17	33	4	11	copy fasta	VARS1	chr6	31772518	31800752
VARS1_chr6_31772518_31800752	0/0	c0004	3795	15	2	4	8	1	0	copy fasta	VARS1	chr6	31772518	31800752
VARS1_chr6_31772518_31800752	0/0	c0005	3795	12	0	0	12	0	0	copy fasta	VARS1	chr6	31772518	31800752
VARS1_chr6_31772518_31800752	0/0	c0006	3795	10	10	0	0	0	0	copy fasta	VARS1	chr6	31772518	31800752
VARS1_chr6_31772518_31800752	0/0	c0007	3795	5	3	1	0	0	1	copy fasta	VARS1	chr6	31772518	31800752
VARS1_chr6_31772518_31800752	0/0	c0008	3795	5	1	3	0	0	1	copy fasta	VARS1	chr6	31772518	31800752
VARS1_chr6_31772518_31800752	0/0	c0009	3795	4	0	0	3	0	1	copy fasta	VARS1	chr6	31772518	31800752
VARS1_chr6_31772518_31800752	0/0	c0010	3795	4	4	0	0	0	0	copy fasta	VARS1	chr6	31772518	31800752
VARS1_chr6_31772518_31800752	0/0	c0011	3795	4	4	0	0	0	0	copy fasta	VARS1	chr6	31772518	31800752
VARS1_chr6_31772518_31800752	0/0	c0012	3795	4	1	0	3	0	0	copy fasta	VARS1	chr6	31772518	31800752
VARS1_chr6_31772518_31800752	0/0	c0013	3795	4	3	1	0	0	0	copy fasta	VARS1	chr6	31772518	31800752
VARS1_chr6_31772518_31800752	0/0	c0014	3795	2	0	0	0	0	2	copy fasta	VARS1	chr6	31772518	31800752
VARS1_chr6_31772518_31800752	0/0	c0015	3795	2	0	0	2	0	0	copy fasta	VARS1	chr6	31772518	31800752
VARS1_chr6_31772518_31800752	0/0	c0016	3795	2	0	2	0	0	0	copy fasta	VARS1	chr6	31772518	31800752
VARS1_chr6_31772518_31800752	0/0	c0017	3795	2	0	0	2	0	0	copy fasta	VARS1	chr6	31772518	31800752
VARS1_chr6_31772518_31800752	0/0	c0018	3795	2	2	0	0	0	0	copy fasta	VARS1	chr6	31772518	31800752
VARS1_chr6_31772518_31800752	0/0	c0019	3795	2	0	0	2	0	0	copy fasta	VARS1	chr6	31772518	31800752
VARS1_chr6_31772518_31800752	0/0	c0020	3795	1	0	1	0	0	0	copy fasta	VARS1	chr6	31772518	31800752