JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
VCX_chrX_7838171_7849143	0/0	c0070	741	1	0	0	0	0	1	copy fasta	VCX	chrX	7838171	7849143
VCX_chrX_7838171_7849143	0/0	c0071	531	1	0	0	0	0	1	copy fasta	VCX	chrX	7838171	7849143
VCX_chrX_7838171_7849143	0/0	c0072	651	1	0	0	1	0	0	copy fasta	VCX	chrX	7838171	7849143
VCX_chrX_7838171_7849143	0/0	c0073	621	1	0	1	0	0	0	copy fasta	VCX	chrX	7838171	7849143
VCX_chrX_7838171_7849143	0/0	c0074	591	1	0	0	1	0	0	copy fasta	VCX	chrX	7838171	7849143
VCX_chrX_7838171_7849143	0/0	c0075	651	1	0	0	1	0	0	copy fasta	VCX	chrX	7838171	7849143
VCX_chrX_7838171_7849143	0/0	c0076	561	1	0	0	1	0	0	copy fasta	VCX	chrX	7838171	7849143
VCX_chrX_7838171_7849143	0/0	c0077	711	1	0	0	1	0	0	copy fasta	VCX	chrX	7838171	7849143
VCX_chrX_7838171_7849143	0/0	c0078	681	1	0	0	1	0	0	copy fasta	VCX	chrX	7838171	7849143
VCX_chrX_7838171_7849143	0/0	c0079	651	1	0	0	1	0	0	copy fasta	VCX	chrX	7838171	7849143
VCX_chrX_7838171_7849143	0/0	c0080	771	1	1	0	0	0	0	copy fasta	VCX	chrX	7838171	7849143
VCX_chrX_7838171_7849143	0/0	c0081	741	1	1	0	0	0	0	copy fasta	VCX	chrX	7838171	7849143
VCX_chrX_7838171_7849143	0/0	c0082	621	1	0	1	0	0	0	copy fasta	VCX	chrX	7838171	7849143
VCX_chrX_7838171_7849143	0/0	c0083	711	1	0	0	1	0	0	copy fasta	VCX	chrX	7838171	7849143
VCX_chrX_7838171_7849143	0/0	c0084	741	1	1	0	0	0	0	copy fasta	VCX	chrX	7838171	7849143
VCX_chrX_7838171_7849143	0/0	c0085	621	1	0	0	1	0	0	copy fasta	VCX	chrX	7838171	7849143
VCX_chrX_7838171_7849143	0/0	c0086	621	1	0	0	1	0	0	copy fasta	VCX	chrX	7838171	7849143
VCX_chrX_7838171_7849143	0/0	c0087	561	1	1	0	0	0	0	copy fasta	VCX	chrX	7838171	7849143
VCX_chrX_7838171_7849143	0/0	c0088	591	1	0	0	1	0	0	copy fasta	VCX	chrX	7838171	7849143
VCX_chrX_7838171_7849143	0/0	c0089	621	1	0	0	1	0	0	copy fasta	VCX	chrX	7838171	7849143
VCX_chrX_7838171_7849143	0/0	c0090	651	1	0	1	0	0	0	copy fasta	VCX	chrX	7838171	7849143
VCX_chrX_7838171_7849143	0/0	c0091	561	1	0	1	0	0	0	copy fasta	VCX	chrX	7838171	7849143
VCX_chrX_7838171_7849143	0/0	c0092	561	1	0	0	0	0	1	copy fasta	VCX	chrX	7838171	7849143
VCX_chrX_7838171_7849143	0/0	c0093	441	1	0	0	0	0	1	copy fasta	VCX	chrX	7838171	7849143
VCX_chrX_7838171_7849143	0/0	c0094	591	1	0	0	1	0	0	copy fasta	VCX	chrX	7838171	7849143
VCX_chrX_7838171_7849143	0/0	c0095	591	1	0	1	0	0	0	copy fasta	VCX	chrX	7838171	7849143
VCX_chrX_7838171_7849143	0/0	c0096	561	1	0	0	0	0	1	copy fasta	VCX	chrX	7838171	7849143
VCX_chrX_7838171_7849143	0/0	c0097	621	1	1	0	0	0	0	copy fasta	VCX	chrX	7838171	7849143
VCX_chrX_7838171_7849143	0/0	c0098	681	1	1	0	0	0	0	copy fasta	VCX	chrX	7838171	7849143
VCX_chrX_7838171_7849143	0/0	c0099	621	1	1	0	0	0	0	copy fasta	VCX	chrX	7838171	7849143
VCX_chrX_7838171_7849143	0/0	c0100	651	1	1	0	0	0	0	copy fasta	VCX	chrX	7838171	7849143
VCX_chrX_7838171_7849143	0/0	c0101	681	1	0	0	0	0	1	copy fasta	VCX	chrX	7838171	7849143
VCX_chrX_7838171_7849143	0/0	c0102	651	1	1	0	0	0	0	copy fasta	VCX	chrX	7838171	7849143
VCX_chrX_7838171_7849143	0/0	c0103	741	1	1	0	0	0	0	copy fasta	VCX	chrX	7838171	7849143
VCX_chrX_7838171_7849143	0/0	c0104	561	1	0	0	1	0	0	copy fasta	VCX	chrX	7838171	7849143
VCX_chrX_7838171_7849143	0/0	c0105	681	1	1	0	0	0	0	copy fasta	VCX	chrX	7838171	7849143
VCX_chrX_7838171_7849143	0/0	c0106	621	1	0	0	1	0	0	copy fasta	VCX	chrX	7838171	7849143
VCX_chrX_7838171_7849143	0/0	c0107	561	1	0	1	0	0	0	copy fasta	VCX	chrX	7838171	7849143
VCX_chrX_7838171_7849143	0/0	c0108	621	1	0	0	1	0	0	copy fasta	VCX	chrX	7838171	7849143
VCX_chrX_7838171_7849143	0/0	c0109	621	1	0	0	1	0	0	copy fasta	VCX	chrX	7838171	7849143
VCX_chrX_7838171_7849143	0/0	c0110	681	1	1	0	0	0	0	copy fasta	VCX	chrX	7838171	7849143
VCX_chrX_7838171_7849143	0/0	c0111	621	1	0	0	1	0	0	copy fasta	VCX	chrX	7838171	7849143
VCX_chrX_7838171_7849143	0/0	c0112	561	1	0	1	0	0	0	copy fasta	VCX	chrX	7838171	7849143
VCX_chrX_7838171_7849143	0/0	c0113	622	1	0	0	1	0	0	copy fasta	VCX	chrX	7838171	7849143
VCX_chrX_7838171_7849143	0/0	c0114	561	1	0	0	1	0	0	copy fasta	VCX	chrX	7838171	7849143
VCX_chrX_7838171_7849143	0/0	c0115	621	1	0	0	0	0	1	copy fasta	VCX	chrX	7838171	7849143
VCX_chrX_7838171_7849143	0/0	c0116	621	1	1	0	0	0	0	copy fasta	VCX	chrX	7838171	7849143
VCX_chrX_7838171_7849143	0/0	c0117	561	1	0	0	1	0	0	copy fasta	VCX	chrX	7838171	7849143
VCY1B_chrY_14051227_14061958	0/0	c0001	378	127	18	20	68	5	16	copy fasta	VCY1B	chrY	14051227	14061958
VCY1B_chrY_14051227_14061958	0/0	c0002	378	1	0	0	1	0	0	copy fasta	VCY1B	chrY	14051227	14061958