JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
VWCE_chr11_61253286_61300316	0/0	c0006	2868	6	6	0	0	0	0	copy fasta	VWCE	chr11	61253286	61300316
VWCE_chr11_61253286_61300316	0/0	c0007	2868	4	4	0	0	0	0	copy fasta	VWCE	chr11	61253286	61300316
VWCE_chr11_61253286_61300316	0/0	c0008	2868	3	0	3	0	0	0	copy fasta	VWCE	chr11	61253286	61300316
VWCE_chr11_61253286_61300316	0/0	c0009	2868	2	2	0	0	0	0	copy fasta	VWCE	chr11	61253286	61300316
VWCE_chr11_61253286_61300316	0/0	c0010	2868	2	2	0	0	0	0	copy fasta	VWCE	chr11	61253286	61300316
VWCE_chr11_61253286_61300316	0/0	c0011	2868	2	2	0	0	0	0	copy fasta	VWCE	chr11	61253286	61300316
VWCE_chr11_61253286_61300316	0/0	c0012	2868	2	2	0	0	0	0	copy fasta	VWCE	chr11	61253286	61300316
VWCE_chr11_61253286_61300316	0/0	c0013	2868	2	2	0	0	0	0	copy fasta	VWCE	chr11	61253286	61300316
VWCE_chr11_61253286_61300316	0/0	c0014	2868	2	0	0	2	0	0	copy fasta	VWCE	chr11	61253286	61300316
VWCE_chr11_61253286_61300316	0/0	c0015	2868	2	0	0	2	0	0	copy fasta	VWCE	chr11	61253286	61300316
VWCE_chr11_61253286_61300316	0/0	c0016	2868	1	1	0	0	0	0	copy fasta	VWCE	chr11	61253286	61300316
VWCE_chr11_61253286_61300316	0/0	c0017	2868	1	1	0	0	0	0	copy fasta	VWCE	chr11	61253286	61300316
VWCE_chr11_61253286_61300316	0/0	c0018	2868	1	0	0	1	0	0	copy fasta	VWCE	chr11	61253286	61300316
VWCE_chr11_61253286_61300316	0/0	c0019	2868	1	0	0	0	0	1	copy fasta	VWCE	chr11	61253286	61300316
VWCE_chr11_61253286_61300316	0/0	c0020	2868	1	0	1	0	0	0	copy fasta	VWCE	chr11	61253286	61300316
VWCE_chr11_61253286_61300316	0/0	c0021	2868	1	1	0	0	0	0	copy fasta	VWCE	chr11	61253286	61300316
VWCE_chr11_61253286_61300316	0/0	c0022	2868	1	0	1	0	0	0	copy fasta	VWCE	chr11	61253286	61300316
VWCE_chr11_61253286_61300316	0/0	c0023	2868	1	0	0	1	0	0	copy fasta	VWCE	chr11	61253286	61300316
VWCE_chr11_61253286_61300316	0/0	c0024	2868	1	1	0	0	0	0	copy fasta	VWCE	chr11	61253286	61300316
VWDE_chr7_12325885_12408865	0/0	c0001	4773	60	5	13	28	7	7	copy fasta	VWDE	chr7	12325885	12408865
VWDE_chr7_12325885_12408865	0/0	c0002	4774	47	2	2	37	1	5	copy fasta	VWDE	chr7	12325885	12408865
VWDE_chr7_12325885_12408865	0/0	c0003	4773	47	2	12	33	0	0	copy fasta	VWDE	chr7	12325885	12408865
VWDE_chr7_12325885_12408865	0/0	c0004	4773	26	6	4	13	0	3	copy fasta	VWDE	chr7	12325885	12408865
VWDE_chr7_12325885_12408865	0/0	c0005	4773	21	3	13	0	2	3	copy fasta	VWDE	chr7	12325885	12408865
VWDE_chr7_12325885_12408865	0/1	c0006	4773	13	2	5	0	2	3	copy fasta	VWDE	chr7	12325885	12408865
VWDE_chr7_12325885_12408865	0/0	c0007	4773	9	9	0	0	0	0	copy fasta	VWDE	chr7	12325885	12408865
VWDE_chr7_12325885_12408865	0/0	c0008	4773	9	0	1	7	0	1	copy fasta	VWDE	chr7	12325885	12408865
VWDE_chr7_12325885_12408865	0/0	c0009	4773	8	0	2	4	2	0	copy fasta	VWDE	chr7	12325885	12408865
VWDE_chr7_12325885_12408865	0/0	c0010	4773	6	6	0	0	0	0	copy fasta	VWDE	chr7	12325885	12408865
VWDE_chr7_12325885_12408865	0/0	c0011	4773	6	6	0	0	0	0	copy fasta	VWDE	chr7	12325885	12408865
VWDE_chr7_12325885_12408865	0/0	c0012	4773	5	5	0	0	0	0	copy fasta	VWDE	chr7	12325885	12408865
VWDE_chr7_12325885_12408865	0/0	c0013	4773	5	5	0	0	0	0	copy fasta	VWDE	chr7	12325885	12408865
VWDE_chr7_12325885_12408865	0/0	c0014	4774	5	2	2	0	0	1	copy fasta	VWDE	chr7	12325885	12408865
VWDE_chr7_12325885_12408865	0/0	c0015	4773	4	0	0	4	0	0	copy fasta	VWDE	chr7	12325885	12408865
VWDE_chr7_12325885_12408865	0/0	c0016	4773	3	3	0	0	0	0	copy fasta	VWDE	chr7	12325885	12408865
VWDE_chr7_12325885_12408865	0/0	c0017	4773	3	0	2	0	0	1	copy fasta	VWDE	chr7	12325885	12408865
VWDE_chr7_12325885_12408865	0/0	c0018	4774	3	2	1	0	0	0	copy fasta	VWDE	chr7	12325885	12408865
VWDE_chr7_12325885_12408865	0/0	c0019	4773	3	0	1	2	0	0	copy fasta	VWDE	chr7	12325885	12408865
VWDE_chr7_12325885_12408865	0/0	c0020	4773	3	0	0	1	1	1	copy fasta	VWDE	chr7	12325885	12408865
VWDE_chr7_12325885_12408865	0/0	c0021	4773	3	2	0	1	0	0	copy fasta	VWDE	chr7	12325885	12408865
VWDE_chr7_12325885_12408865	0/0	c0022	4773	2	1	0	0	0	1	copy fasta	VWDE	chr7	12325885	12408865
VWDE_chr7_12325885_12408865	0/0	c0023	4773	2	2	0	0	0	0	copy fasta	VWDE	chr7	12325885	12408865
VWDE_chr7_12325885_12408865	0/0	c0024	4773	2	0	0	2	0	0	copy fasta	VWDE	chr7	12325885	12408865
VWDE_chr7_12325885_12408865	0/0	c0025	4773	2	0	0	2	0	0	copy fasta	VWDE	chr7	12325885	12408865
VWDE_chr7_12325885_12408865	0/0	c0026	4773	2	0	0	2	0	0	copy fasta	VWDE	chr7	12325885	12408865
VWDE_chr7_12325885_12408865	0/0	c0027	4774	2	0	0	2	0	0	copy fasta	VWDE	chr7	12325885	12408865
VWDE_chr7_12325885_12408865	0/0	c0028	4773	2	0	0	0	0	2	copy fasta	VWDE	chr7	12325885	12408865
VWDE_chr7_12325885_12408865	0/0	c0029	4773	2	0	0	1	0	1	copy fasta	VWDE	chr7	12325885	12408865
VWDE_chr7_12325885_12408865	0/0	c0030	4773	2	2	0	0	0	0	copy fasta	VWDE	chr7	12325885	12408865
VWDE_chr7_12325885_12408865	0/0	c0031	4773	2	2	0	0	0	0	copy fasta	VWDE	chr7	12325885	12408865