JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
VWDE_chr7_12325885_12408865	0/0	c0082	4773	1	1	0	0	0	0	copy fasta	VWDE	chr7	12325885	12408865
VWDE_chr7_12325885_12408865	0/0	c0083	4773	1	1	0	0	0	0	copy fasta	VWDE	chr7	12325885	12408865
VWDE_chr7_12325885_12408865	0/0	c0084	3886	1	0	1	0	0	0	copy fasta	VWDE	chr7	12325885	12408865
VWDE_chr7_12325885_12408865	0/0	c0085	4773	1	1	0	0	0	0	copy fasta	VWDE	chr7	12325885	12408865
VWDE_chr7_12325885_12408865	0/0	c0086	4773	1	0	0	0	0	1	copy fasta	VWDE	chr7	12325885	12408865
VWDE_chr7_12325885_12408865	0/0	c0087	4773	1	1	0	0	0	0	copy fasta	VWDE	chr7	12325885	12408865
VWDE_chr7_12325885_12408865	0/0	c0088	4773	1	0	1	0	0	0	copy fasta	VWDE	chr7	12325885	12408865
VWDE_chr7_12325885_12408865	0/0	c0089	4773	1	1	0	0	0	0	copy fasta	VWDE	chr7	12325885	12408865
VWDE_chr7_12325885_12408865	0/0	c0090	4773	1	1	0	0	0	0	copy fasta	VWDE	chr7	12325885	12408865
VWF_chr12_5943877_6129670	0/0	c0001	8442	11	0	0	9	0	2	copy fasta	VWF	chr12	5943877	6129670
VWF_chr12_5943877_6129670	0/0	c0002	8442	10	1	2	3	3	1	copy fasta	VWF	chr12	5943877	6129670
VWF_chr12_5943877_6129670	0/0	c0003	8442	7	1	2	4	0	0	copy fasta	VWF	chr12	5943877	6129670
VWF_chr12_5943877_6129670	0/0	c0004	8442	6	0	2	4	0	0	copy fasta	VWF	chr12	5943877	6129670
VWF_chr12_5943877_6129670	0/0	c0005	8442	6	0	6	0	0	0	copy fasta	VWF	chr12	5943877	6129670
VWF_chr12_5943877_6129670	0/0	c0006	8442	6	0	4	2	0	0	copy fasta	VWF	chr12	5943877	6129670
VWF_chr12_5943877_6129670	0/0	c0007	8442	6	0	0	6	0	0	copy fasta	VWF	chr12	5943877	6129670
VWF_chr12_5943877_6129670	0/0	c0008	8442	5	0	0	5	0	0	copy fasta	VWF	chr12	5943877	6129670
VWF_chr12_5943877_6129670	0/0	c0009	8442	4	4	0	0	0	0	copy fasta	VWF	chr12	5943877	6129670
VWF_chr12_5943877_6129670	0/0	c0010	8442	4	0	0	3	0	1	copy fasta	VWF	chr12	5943877	6129670
VWF_chr12_5943877_6129670	0/0	c0011	8442	4	0	2	1	1	0	copy fasta	VWF	chr12	5943877	6129670
VWF_chr12_5943877_6129670	0/0	c0012	8442	4	0	1	0	0	3	copy fasta	VWF	chr12	5943877	6129670
VWF_chr12_5943877_6129670	0/0	c0013	8442	4	0	0	4	0	0	copy fasta	VWF	chr12	5943877	6129670
VWF_chr12_5943877_6129670	0/0	c0014	8442	3	0	2	0	1	0	copy fasta	VWF	chr12	5943877	6129670
VWF_chr12_5943877_6129670	0/0	c0015	8442	3	3	0	0	0	0	copy fasta	VWF	chr12	5943877	6129670
VWF_chr12_5943877_6129670	0/0	c0016	8442	2	2	0	0	0	0	copy fasta	VWF	chr12	5943877	6129670
VWF_chr12_5943877_6129670	0/0	c0017	8442	2	2	0	0	0	0	copy fasta	VWF	chr12	5943877	6129670
VWF_chr12_5943877_6129670	0/0	c0018	8442	2	2	0	0	0	0	copy fasta	VWF	chr12	5943877	6129670
VWF_chr12_5943877_6129670	0/0	c0019	8442	2	2	0	0	0	0	copy fasta	VWF	chr12	5943877	6129670
VWF_chr12_5943877_6129670	0/0	c0020	8442	2	2	0	0	0	0	copy fasta	VWF	chr12	5943877	6129670
VWF_chr12_5943877_6129670	0/0	c0021	8442	2	0	0	2	0	0	copy fasta	VWF	chr12	5943877	6129670
VWF_chr12_5943877_6129670	0/0	c0022	8442	2	0	2	0	0	0	copy fasta	VWF	chr12	5943877	6129670
VWF_chr12_5943877_6129670	1/0	c0023	8442	2	0	0	1	0	0	copy fasta	VWF	chr12	5943877	6129670
VWF_chr12_5943877_6129670	0/0	c0024	8442	2	0	0	1	0	1	copy fasta	VWF	chr12	5943877	6129670
VWF_chr12_5943877_6129670	0/0	c0025	8442	2	2	0	0	0	0	copy fasta	VWF	chr12	5943877	6129670
VWF_chr12_5943877_6129670	0/0	c0026	8442	2	0	2	0	0	0	copy fasta	VWF	chr12	5943877	6129670
VWF_chr12_5943877_6129670	0/0	c0027	8442	2	0	0	0	0	2	copy fasta	VWF	chr12	5943877	6129670
VWF_chr12_5943877_6129670	0/0	c0028	8442	2	0	1	0	0	1	copy fasta	VWF	chr12	5943877	6129670
VWF_chr12_5943877_6129670	0/0	c0029	8442	2	0	0	1	0	1	copy fasta	VWF	chr12	5943877	6129670
VWF_chr12_5943877_6129670	0/0	c0030	8442	2	0	0	2	0	0	copy fasta	VWF	chr12	5943877	6129670
VWF_chr12_5943877_6129670	0/0	c0031	8442	2	0	0	2	0	0	copy fasta	VWF	chr12	5943877	6129670
VWF_chr12_5943877_6129670	0/0	c0032	8442	2	0	0	1	0	1	copy fasta	VWF	chr12	5943877	6129670
VWF_chr12_5943877_6129670	0/0	c0033	8442	2	1	0	0	0	1	copy fasta	VWF	chr12	5943877	6129670
VWF_chr12_5943877_6129670	0/0	c0034	8442	2	0	0	2	0	0	copy fasta	VWF	chr12	5943877	6129670
VWF_chr12_5943877_6129670	0/0	c0035	8442	2	0	2	0	0	0	copy fasta	VWF	chr12	5943877	6129670
VWF_chr12_5943877_6129670	0/0	c0036	8442	2	0	2	0	0	0	copy fasta	VWF	chr12	5943877	6129670
VWF_chr12_5943877_6129670	0/0	c0037	8442	2	0	0	2	0	0	copy fasta	VWF	chr12	5943877	6129670
VWF_chr12_5943877_6129670	0/0	c0038	8442	2	2	0	0	0	0	copy fasta	VWF	chr12	5943877	6129670
VWF_chr12_5943877_6129670	0/0	c0039	8442	2	0	0	2	0	0	copy fasta	VWF	chr12	5943877	6129670
VWF_chr12_5943877_6129670	0/0	c0040	8442	2	0	0	1	0	1	copy fasta	VWF	chr12	5943877	6129670
VWF_chr12_5943877_6129670	0/0	c0041	8442	2	2	0	0	0	0	copy fasta	VWF	chr12	5943877	6129670