JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
WDR12_chr2_202869261_202916673	0/0	c0003	1272	2	0	0	2	0	0	copy fasta	WDR12	chr2	202869261	202916673
WDR12_chr2_202869261_202916673	0/0	c0004	1268	1	0	0	1	0	0	copy fasta	WDR12	chr2	202869261	202916673
WDR12_chr2_202869261_202916673	0/0	c0005	1272	1	0	0	1	0	0	copy fasta	WDR12	chr2	202869261	202916673
WDR12_chr2_202869261_202916673	0/0	c0006	1272	1	0	0	1	0	0	copy fasta	WDR12	chr2	202869261	202916673
WDR12_chr2_202869261_202916673	0/0	c0007	1272	1	0	0	0	0	1	copy fasta	WDR12	chr2	202869261	202916673
WDR12_chr2_202869261_202916673	0/0	c0008	1272	1	0	0	1	0	0	copy fasta	WDR12	chr2	202869261	202916673
WDR12_chr2_202869261_202916673	0/0	c0009	1272	1	0	0	1	0	0	copy fasta	WDR12	chr2	202869261	202916673
WDR12_chr2_202869261_202916673	0/0	c0010	1272	1	0	0	1	0	0	copy fasta	WDR12	chr2	202869261	202916673
WDR13_chrX_48592492_48613869	1/1	c0001	1458	298	80	46	133	9	28	copy fasta	WDR13	chrX	48592492	48613869
WDR13_chrX_48592492_48613869	0/0	c0002	1459	3	0	0	3	0	0	copy fasta	WDR13	chrX	48592492	48613869
WDR13_chrX_48592492_48613869	0/0	c0003	1459	1	0	0	1	0	0	copy fasta	WDR13	chrX	48592492	48613869
WDR13_chrX_48592492_48613869	0/0	c0004	1457	1	0	1	0	0	0	copy fasta	WDR13	chrX	48592492	48613869
WDR13_chrX_48592492_48613869	0/0	c0005	1458	1	0	0	1	0	0	copy fasta	WDR13	chrX	48592492	48613869
WDR13_chrX_48592492_48613869	0/0	c0006	1458	1	0	1	0	0	0	copy fasta	WDR13	chrX	48592492	48613869
WDR13_chrX_48592492_48613869	0/0	c0007	1462	1	0	0	1	0	0	copy fasta	WDR13	chrX	48592492	48613869
WDR13_chrX_48592492_48613869	0/0	c0008	1458	1	0	0	1	0	0	copy fasta	WDR13	chrX	48592492	48613869
WDR13_chrX_48592492_48613869	0/0	c0009	1464	1	0	0	1	0	0	copy fasta	WDR13	chrX	48592492	48613869
WDR13_chrX_48592492_48613869	0/0	c0010	1459	1	0	0	1	0	0	copy fasta	WDR13	chrX	48592492	48613869
WDR13_chrX_48592492_48613869	0/0	c0011	1465	1	0	0	1	0	0	copy fasta	WDR13	chrX	48592492	48613869
WDR17_chr4_176060841_176187815	0/0	c0001	3852	140	28	21	71	2	18	copy fasta	WDR17	chr4	176060841	176187815
WDR17_chr4_176060841_176187815	0/0	c0002	3852	83	21	13	42	4	3	copy fasta	WDR17	chr4	176060841	176187815
WDR17_chr4_176060841_176187815	0/1	c0003	3852	44	3	9	23	1	7	copy fasta	WDR17	chr4	176060841	176187815
WDR17_chr4_176060841_176187815	0/0	c0004	3852	24	5	3	13	2	1	copy fasta	WDR17	chr4	176060841	176187815
WDR17_chr4_176060841_176187815	0/0	c0005	3852	12	3	3	2	1	3	copy fasta	WDR17	chr4	176060841	176187815
WDR17_chr4_176060841_176187815	0/0	c0006	3852	7	7	0	0	0	0	copy fasta	WDR17	chr4	176060841	176187815
WDR17_chr4_176060841_176187815	0/0	c0007	3852	6	0	1	0	1	4	copy fasta	WDR17	chr4	176060841	176187815
WDR17_chr4_176060841_176187815	0/0	c0008	3852	6	4	2	0	0	0	copy fasta	WDR17	chr4	176060841	176187815
WDR17_chr4_176060841_176187815	0/0	c0009	3852	5	0	0	5	0	0	copy fasta	WDR17	chr4	176060841	176187815
WDR17_chr4_176060841_176187815	0/0	c0010	3852	5	5	0	0	0	0	copy fasta	WDR17	chr4	176060841	176187815
WDR17_chr4_176060841_176187815	0/0	c0011	3852	4	0	1	3	0	0	copy fasta	WDR17	chr4	176060841	176187815
WDR17_chr4_176060841_176187815	1/0	c0012	3852	2	1	0	0	0	0	copy fasta	WDR17	chr4	176060841	176187815
WDR17_chr4_176060841_176187815	0/0	c0013	3852	1	0	1	0	0	0	copy fasta	WDR17	chr4	176060841	176187815
WDR17_chr4_176060841_176187815	0/0	c0014	3852	1	1	0	0	0	0	copy fasta	WDR17	chr4	176060841	176187815
WDR17_chr4_176060841_176187815	0/0	c0015	3852	1	1	0	0	0	0	copy fasta	WDR17	chr4	176060841	176187815
WDR17_chr4_176060841_176187815	0/0	c0016	3852	1	0	0	0	1	0	copy fasta	WDR17	chr4	176060841	176187815
WDR17_chr4_176060841_176187815	0/0	c0017	3852	1	0	1	0	0	0	copy fasta	WDR17	chr4	176060841	176187815
WDR17_chr4_176060841_176187815	0/0	c0018	3852	1	0	0	0	0	1	copy fasta	WDR17	chr4	176060841	176187815
WDR17_chr4_176060841_176187815	0/0	c0019	3852	1	1	0	0	0	0	copy fasta	WDR17	chr4	176060841	176187815
WDR17_chr4_176060841_176187815	0/0	c0020	3852	1	0	1	0	0	0	copy fasta	WDR17	chr4	176060841	176187815
WDR17_chr4_176060841_176187815	0/0	c0021	3852	1	1	0	0	0	0	copy fasta	WDR17	chr4	176060841	176187815
WDR17_chr4_176060841_176187815	0/0	c0022	3852	1	0	1	0	0	0	copy fasta	WDR17	chr4	176060841	176187815
WDR17_chr4_176060841_176187815	0/0	c0023	3852	1	0	0	1	0	0	copy fasta	WDR17	chr4	176060841	176187815
WDR17_chr4_176060841_176187815	0/0	c0024	3852	1	0	1	0	0	0	copy fasta	WDR17	chr4	176060841	176187815
WDR17_chr4_176060841_176187815	0/0	c0025	3852	1	1	0	0	0	0	copy fasta	WDR17	chr4	176060841	176187815
WDR17_chr4_176060841_176187815	0/0	c0026	3852	1	1	0	0	0	0	copy fasta	WDR17	chr4	176060841	176187815
WDR17_chr4_176060841_176187815	0/0	c0027	3852	1	1	0	0	0	0	copy fasta	WDR17	chr4	176060841	176187815
WDR17_chr4_176060841_176187815	0/0	c0028	3852	1	0	0	1	0	0	copy fasta	WDR17	chr4	176060841	176187815
WDR17_chr4_176060841_176187815	0/0	c0029	3852	1	0	0	1	0	0	copy fasta	WDR17	chr4	176060841	176187815
WDR17_chr4_176060841_176187815	0/0	c0030	3852	1	0	0	0	0	1	copy fasta	WDR17	chr4	176060841	176187815
WDR18_chr19_979345_999557	0/1	c0001	1299	143	30	35	49	9	19	copy fasta	WDR18	chr19	979345	999557